Wall clock time and date at job start Mon Mar 30 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47100 * 2 1 4 4 H 1.09002 * 109.47233 * 305.20160 * 3 2 1 5 5 C 1.53006 * 109.47057 * 185.19884 * 3 2 1 6 6 N 1.46893 * 109.47084 * 179.97438 * 5 3 2 7 7 C 1.46904 * 111.00096 * 180.02562 * 6 5 3 8 8 C 1.50694 * 109.47417 * 180.02562 * 7 6 5 9 9 C 1.38635 * 119.74677 * 269.73142 * 8 7 6 10 10 C 1.37621 * 120.24767 * 179.72155 * 9 8 7 11 11 C 1.40721 * 119.74073 * 0.56431 * 10 9 8 12 12 C 1.41394 * 120.24128 * 179.68132 * 11 10 9 13 13 H 1.08002 * 120.00223 * 206.60988 * 12 11 10 14 14 C 1.39951 * 120.00171 * 26.60923 * 12 11 10 15 15 N 1.30820 * 119.99802 * 15.66373 * 14 12 11 16 16 Si 1.86793 * 119.99934 * 195.66039 * 14 12 11 17 17 H 1.48497 * 109.47283 * 90.00195 * 16 14 12 18 18 H 1.48504 * 109.46969 * 210.00080 * 16 14 12 19 19 H 1.48500 * 109.47621 * 329.99725 * 16 14 12 20 20 C 1.40716 * 119.51574 * 359.71010 * 11 10 9 21 21 C 1.37620 * 119.74204 * 359.97438 * 20 11 10 22 22 O 1.42897 * 109.47014 * 65.20380 * 3 2 1 23 23 C 1.42903 * 113.99642 * 259.12402 * 22 3 2 24 24 H 1.08994 * 109.47459 * 176.85761 * 1 2 3 25 25 H 1.09002 * 109.47070 * 296.86461 * 1 2 3 26 26 H 1.09001 * 109.47003 * 56.86019 * 1 2 3 27 27 H 1.08997 * 109.47141 * 239.99980 * 2 1 3 28 28 H 1.09008 * 109.47021 * 119.99810 * 2 1 3 29 29 H 1.08998 * 109.46867 * 300.00390 * 5 3 2 30 30 H 1.09000 * 109.46682 * 59.99676 * 5 3 2 31 31 H 1.00895 * 111.00156 * 56.04821 * 6 5 3 32 32 H 1.08999 * 109.47101 * 300.00469 * 7 6 5 33 33 H 1.09003 * 109.46542 * 59.99721 * 7 6 5 34 34 H 1.08001 * 119.87854 * 359.97150 * 9 8 7 35 35 H 1.08002 * 120.13110 * 180.27862 * 10 9 8 36 36 H 0.97004 * 120.00125 * 179.97438 * 15 14 12 37 37 H 1.07989 * 120.13060 * 179.97438 * 20 11 10 38 38 H 1.07994 * 119.87551 * 180.02562 * 21 20 11 39 39 H 1.09003 * 109.46802 * 176.83961 * 23 22 3 40 40 H 1.08991 * 109.47453 * 296.84579 * 23 22 3 41 41 H 1.09003 * 109.46970 * 56.84851 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9826 -0.8397 5 6 3.5645 1.4445 -0.1307 6 7 4.0541 2.8294 -0.1313 7 6 5.5172 2.8705 -0.2562 8 6 5.9817 4.3041 -0.2526 9 6 6.0957 4.9933 -1.4501 10 6 6.5133 6.3046 -1.4582 11 6 6.8365 6.9418 -0.2459 12 6 7.2732 8.2866 -0.2426 13 1 7.9086 8.6462 0.5533 14 6 6.8821 9.1519 -1.2707 15 7 5.8870 8.8275 -2.0555 16 14 7.7810 10.7699 -1.5223 17 1 8.9133 10.5664 -2.4612 18 1 6.8439 11.7741 -2.0870 19 1 8.3002 11.2557 -0.2186 20 6 6.7226 6.2307 0.9630 21 6 6.2966 4.9222 0.9478 22 8 1.6661 2.0799 1.2230 23 6 0.5266 2.9346 1.1082 24 1 -0.3634 -1.0260 -0.0563 25 1 -0.3633 0.4644 0.9168 26 1 -0.3633 0.5618 -0.8605 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 4.0018 0.9044 0.7090 30 1 3.8497 0.9582 -1.0636 31 1 3.7474 3.3217 0.6942 32 1 5.9685 2.3406 0.5826 33 1 5.8156 2.3938 -1.1900 34 1 5.8519 4.5006 -2.3797 35 1 6.5972 6.8411 -2.3918 36 1 5.6156 9.4274 -2.7679 37 1 6.9684 6.7099 1.8990 38 1 6.2080 4.3745 1.8743 39 1 0.2732 3.3360 2.0895 40 1 0.7547 3.7549 0.4278 41 1 -0.3175 2.3645 0.7200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399130884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:36 Heat of formation + Delta-G solvation = -62.107767 kcal Electronic energy + Delta-G solvation = -19281.947888 eV Core-core repulsion = 16353.007065 eV Total energy + Delta-G solvation = -2928.940823 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.84661 -39.36896 -36.77124 -35.34550 -34.15365 -32.14448 -31.14542 -29.79643 -27.88265 -26.71400 -24.84513 -23.27226 -22.80906 -22.08726 -21.52211 -19.19975 -17.88630 -17.27452 -17.04472 -16.46856 -15.85224 -15.80810 -15.47604 -15.24663 -15.04069 -14.70291 -14.31199 -13.97976 -13.79663 -13.49421 -13.42398 -13.13426 -13.06196 -12.74101 -12.67767 -12.58680 -12.22445 -12.17085 -12.03586 -11.88099 -11.56414 -11.38037 -11.21367 -11.02280 -10.36902 -9.35403 -9.33369 -9.10067 -8.60309 -6.32841 0.96099 1.16133 1.38127 1.51170 1.51924 2.21921 2.71436 2.90611 3.35889 3.80085 3.98473 4.12542 4.18434 4.31350 4.36509 4.42439 4.48586 4.57053 4.59063 4.62184 4.67970 4.79118 4.81837 4.86783 4.87989 5.02165 5.07680 5.10376 5.18069 5.21556 5.39465 5.40026 5.47923 5.73345 5.95126 6.11582 6.18333 6.28793 6.33236 6.41130 6.51419 6.72817 6.96240 7.05782 8.36860 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.003509 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.875286 B = 7977.407738 C = 8243.493070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C 0.090 3.910 4 H 0.064 0.936 5 C 0.057 3.943 6 N -0.694 5.694 7 C 0.131 3.869 8 C -0.198 4.198 9 C -0.087 4.087 10 C -0.187 4.187 11 C 0.079 3.921 12 C -0.504 4.504 13 H 0.073 0.927 14 C 0.033 3.967 15 N -0.829 5.829 16 Si 0.983 3.017 17 H -0.262 1.262 18 H -0.268 1.268 19 H -0.259 1.259 20 C -0.241 4.241 21 C -0.087 4.087 22 O -0.402 6.402 23 C 0.026 3.974 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.091 0.909 31 H 0.340 0.660 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.287 0.713 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.033 0.967 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.622 -13.232 1.651 15.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.032 3.968 4 H 0.082 0.918 5 C -0.072 4.072 6 N -0.325 5.325 7 C 0.003 3.997 8 C -0.200 4.200 9 C -0.106 4.106 10 C -0.207 4.207 11 C 0.077 3.923 12 C -0.534 4.534 13 H 0.091 0.909 14 C -0.181 4.181 15 N -0.456 5.456 16 Si 0.804 3.196 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.261 4.261 21 C -0.106 4.106 22 O -0.322 6.322 23 C -0.070 4.070 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.109 0.891 31 H 0.158 0.842 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.052 0.948 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.786 -13.107 0.958 15.809 hybrid contribution 0.429 0.821 0.505 1.054 sum -8.358 -12.286 1.463 14.931 Atomic orbital electron populations 1.21815 0.94930 1.02494 1.01706 1.21931 0.97072 0.95241 1.03180 1.22306 0.93936 0.93795 0.86793 0.91786 1.22219 0.94030 0.89648 1.01292 1.60543 1.10882 1.14590 1.46489 1.20482 0.86909 0.92176 1.00166 1.19363 1.11002 0.96863 0.92739 1.20740 0.98752 0.94051 0.97015 1.21261 1.07308 0.94293 0.97791 1.17973 0.89296 0.93380 0.91682 1.19826 1.29172 0.95443 1.08936 0.90866 1.26754 0.93871 1.03772 0.93694 1.69885 1.21526 1.38614 1.15532 0.85188 0.78702 0.76125 0.79562 1.18670 1.19242 1.18295 1.21164 1.11917 0.96443 0.96526 1.20685 0.98817 0.94266 0.96790 1.87826 1.48723 1.62626 1.33002 1.22974 0.87994 0.93081 1.02929 0.91385 0.92794 0.92622 0.89684 0.91463 0.94882 0.89092 0.84236 0.95020 0.90900 0.87884 0.88428 0.90281 0.88704 0.87049 0.89123 0.94782 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.84 71.98 0.64 -1.63 16 2 C -0.14 -2.33 5.64 30.60 0.17 -2.15 16 3 C 0.09 2.02 2.54 30.60 0.08 2.10 16 4 H 0.06 1.51 7.70 -2.39 -0.02 1.49 16 5 C 0.06 1.42 5.42 86.31 0.47 1.89 16 6 N -0.69 -22.25 6.49 -517.94 -3.36 -25.61 16 7 C 0.13 4.45 5.80 85.55 0.50 4.94 16 8 C -0.20 -8.54 5.41 -19.68 -0.11 -8.65 16 9 C -0.09 -4.14 9.67 22.22 0.21 -3.93 16 10 C -0.19 -10.19 8.68 22.73 0.20 -10.00 16 11 C 0.08 4.42 5.56 -21.29 -0.12 4.30 16 12 C -0.50 -28.15 9.06 23.46 0.21 -27.94 16 13 H 0.07 3.95 7.89 -2.91 -0.02 3.93 16 14 C 0.03 1.73 5.17 85.26 0.44 2.17 16 15 N -0.83 -44.86 10.97 21.83 0.24 -44.62 16 16 Si 0.98 39.34 29.59 68.60 2.03 41.37 16 17 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 18 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 20 C -0.24 -12.25 9.80 22.73 0.22 -12.02 16 21 C -0.09 -3.89 9.67 22.22 0.21 -3.67 16 22 O -0.40 -10.22 9.46 -148.98 -1.41 -11.63 16 23 C 0.03 0.56 10.37 113.37 1.18 1.73 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.86 6.50 -2.39 -0.02 0.84 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.34 11.72 8.11 -89.70 -0.73 10.99 16 32 H 0.03 1.00 8.08 -2.39 -0.02 0.98 16 33 H 0.07 2.32 8.08 -2.39 -0.02 2.30 16 34 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.10 5.58 6.24 -2.91 -0.02 5.56 16 36 H 0.29 14.01 8.30 -92.71 -0.77 13.25 16 37 H 0.09 4.58 8.06 -2.92 -0.02 4.56 16 38 H 0.11 4.30 8.06 -2.91 -0.02 4.27 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 1.01 5.95 -2.39 -0.01 0.99 16 Total: -1.00 -60.86 335.60 2.07 -58.78 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.27 Total: 34.58 kcal Atomic # 6 Polarization: -57.16 SS G_CDS: 4.30 Total: -52.86 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -3.12 Total: -70.24 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.41 Total: -11.63 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -60.86 2.07 -58.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399130884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.325 kcal (2) G-P(sol) polarization free energy of solvation -60.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds