Wall clock time and date at job start Mon Mar 30 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46828 * 2 1 4 4 H 1.08997 * 109.47275 * 304.99755 * 3 2 1 5 5 O 1.42895 * 109.47174 * 65.00555 * 3 2 1 6 6 C 1.53006 * 109.46949 * 184.99866 * 3 2 1 7 7 H 1.09000 * 109.46598 * 55.00123 * 6 3 2 8 8 C 1.52992 * 109.47183 * 295.00347 * 6 3 2 9 9 N 1.46893 * 109.46979 * 174.99799 * 6 3 2 10 10 C 1.46900 * 110.99998 * 205.00049 * 9 6 3 11 11 C 1.50707 * 109.47109 * 180.02562 * 10 9 6 12 12 C 1.38630 * 119.74947 * 269.72652 * 11 10 9 13 13 C 1.37622 * 120.24628 * 179.71756 * 12 11 10 14 14 C 1.40712 * 119.74245 * 0.58001 * 13 12 11 15 15 C 1.41398 * 120.24312 * 179.67889 * 14 13 12 16 16 H 1.08000 * 120.00193 * 24.40406 * 15 14 13 17 17 C 1.39944 * 120.00046 * 204.41165 * 15 14 13 18 18 N 1.30823 * 120.00177 * 17.84926 * 17 15 14 19 19 Si 1.86803 * 119.99930 * 197.85531 * 17 15 14 20 20 H 1.48495 * 109.47187 * 59.99862 * 19 17 15 21 21 H 1.48498 * 109.47047 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46927 * 299.99584 * 19 17 15 23 23 C 1.40719 * 119.51362 * 359.69808 * 14 13 12 24 24 C 1.37611 * 119.74218 * 359.97438 * 23 14 13 25 25 H 1.08997 * 109.46836 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47046 * 300.00031 * 1 2 3 27 27 H 1.09000 * 109.47077 * 59.99744 * 1 2 3 28 28 H 1.08996 * 109.47091 * 240.00405 * 2 1 3 29 29 H 1.08996 * 109.47081 * 119.99743 * 2 1 3 30 30 H 0.96698 * 114.00568 * 59.99703 * 5 3 2 31 31 H 1.09001 * 109.47413 * 179.97438 * 8 6 3 32 32 H 1.08999 * 109.47486 * 60.00101 * 8 6 3 33 33 H 1.09000 * 109.47171 * 299.99425 * 8 6 3 34 34 H 1.00901 * 111.00387 * 328.95725 * 9 6 3 35 35 H 1.09000 * 109.47617 * 300.00392 * 10 9 6 36 36 H 1.08995 * 109.47297 * 60.00424 * 10 9 6 37 37 H 1.08005 * 119.87579 * 359.97438 * 12 11 10 38 38 H 1.07997 * 120.13103 * 180.27905 * 13 12 11 39 39 H 0.96998 * 120.00406 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.12667 * 179.97438 * 23 14 13 41 41 H 1.08002 * 119.87205 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 1 3.8570 0.8801 -1.0113 8 6 4.1798 0.7976 1.1170 9 7 4.0445 2.8276 -0.2461 10 6 5.3393 2.8774 -0.9382 11 6 5.7986 4.3090 -1.0422 12 6 5.4446 5.0664 -2.1480 13 6 5.8536 6.3764 -2.2507 14 6 6.6441 6.9427 -1.2336 15 6 7.0758 8.2856 -1.3315 16 1 6.5189 8.9895 -1.9322 17 6 8.2248 8.7027 -0.6501 18 7 9.0866 7.8181 -0.2185 19 14 8.5279 10.5225 -0.3569 20 1 7.4116 11.0876 0.4428 21 1 9.8041 10.6990 0.3816 22 1 8.6088 11.2273 -1.6614 23 6 7.0021 6.1626 -0.1185 24 6 6.5762 4.8569 -0.0337 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0142 1.6542 2.0139 31 1 5.2661 0.7985 1.0273 32 1 3.8239 -0.2287 1.2063 33 1 3.8876 1.3619 2.0026 34 1 3.3628 3.4075 -0.7122 35 1 6.0740 2.3003 -0.3767 36 1 5.2334 2.4560 -1.9379 37 1 4.8422 4.6280 -2.9299 38 1 5.5730 6.9661 -3.1108 39 1 9.8832 8.1072 0.2535 40 1 7.6089 6.5871 0.6677 41 1 6.8501 4.2561 0.8210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399159439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:42 Heat of formation + Delta-G solvation = -52.885120 kcal Electronic energy + Delta-G solvation = -19378.895123 eV Core-core repulsion = 16450.354224 eV Total energy + Delta-G solvation = -2928.540899 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.92427 -37.58561 -35.25970 -33.60499 -32.87292 -31.00222 -29.32396 -28.89581 -26.72836 -25.80757 -23.33033 -21.83911 -20.91645 -20.30514 -19.80610 -17.25893 -16.72573 -16.03312 -15.46386 -15.28634 -15.01479 -14.20499 -14.08966 -13.65014 -13.60502 -13.05890 -12.67193 -12.49513 -12.28663 -12.09095 -11.94544 -11.87856 -11.86479 -11.45259 -11.27057 -11.10131 -11.00693 -10.92906 -10.70003 -10.42071 -10.38548 -9.80185 -9.52180 -9.32612 -9.09350 -8.00047 -7.39696 -7.26813 -6.73015 -4.31430 2.78752 3.08172 3.10974 3.12314 3.22191 3.95468 4.19429 4.52160 4.63539 4.73786 4.85469 4.95607 5.15436 5.28079 5.38493 5.52150 5.64870 5.71960 5.73491 5.78527 5.86989 5.94125 5.98873 6.00209 6.06131 6.28161 6.30646 6.42686 6.49980 6.99814 7.10524 7.33830 7.40194 7.44946 7.64907 7.66798 7.79076 7.94228 8.09544 8.19527 8.34220 8.68585 8.93285 9.02163 10.21562 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.040881 B = 0.003399 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.754337 B = 8235.230386 C = 8305.985013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.156 4.156 3 C 0.107 3.893 4 H 0.094 0.906 5 O -0.549 6.549 6 C 0.049 3.951 7 H 0.043 0.957 8 C -0.145 4.145 9 N -0.672 5.672 10 C 0.125 3.875 11 C -0.212 4.212 12 C -0.086 4.086 13 C -0.228 4.228 14 C 0.113 3.887 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.794 5.794 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.167 4.167 24 C -0.078 4.078 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.371 0.629 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.341 0.659 35 H 0.060 0.940 36 H 0.016 0.984 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.280 0.720 40 H 0.117 0.883 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 -12.670 1.799 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.047 3.953 4 H 0.112 0.888 5 O -0.355 6.355 6 C -0.062 4.062 7 H 0.061 0.939 8 C -0.203 4.203 9 N -0.304 5.304 10 C -0.003 4.003 11 C -0.214 4.214 12 C -0.104 4.104 13 C -0.247 4.247 14 C 0.110 3.890 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.419 5.419 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.187 4.187 24 C -0.097 4.097 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.219 0.781 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.135 0.865 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.210 -12.290 2.127 15.505 hybrid contribution 0.391 0.195 -0.533 0.689 sum -8.819 -12.095 1.594 15.053 Atomic orbital electron populations 1.21702 0.95206 1.01208 1.02450 1.22268 0.96973 0.97448 1.02710 1.22100 0.92615 0.92368 0.88224 0.88808 1.86590 1.76273 1.57320 1.15280 1.22216 0.94541 0.91499 0.97933 0.93878 1.21833 1.01526 0.98771 0.98182 1.60587 1.05262 1.07288 1.57254 1.20614 0.90140 0.95306 0.94238 1.18887 1.08944 0.94852 0.98709 1.20346 0.99312 0.94539 0.96241 1.20918 1.09005 0.94946 0.99846 1.17617 0.88927 0.92816 0.89635 1.19562 1.08223 0.95421 1.26157 0.90561 1.25905 0.95063 0.99835 0.93333 1.69821 1.07987 1.35986 1.28096 0.86383 0.78263 0.82685 0.79468 1.18811 1.20368 1.19057 1.21312 1.04374 0.93763 0.99213 1.20479 0.97372 0.95434 0.96409 0.93041 0.92012 0.92828 0.91318 0.91365 0.78116 0.92278 0.92913 0.91790 0.83946 0.92116 0.96611 0.90009 0.89202 0.90866 0.86535 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.81 37.16 0.36 -0.86 16 2 C -0.16 -1.33 5.24 -26.73 -0.14 -1.47 16 3 C 0.11 1.16 2.67 -26.73 -0.07 1.09 16 4 H 0.09 1.08 8.02 -51.93 -0.42 0.66 16 5 O -0.55 -6.72 12.72 -35.23 -0.45 -7.17 16 6 C 0.05 0.59 2.48 -67.72 -0.17 0.43 16 7 H 0.04 0.53 7.80 -51.93 -0.40 0.12 16 8 C -0.15 -1.61 8.75 37.15 0.32 -1.28 16 9 N -0.67 -10.70 6.25 -108.00 -0.67 -11.38 16 10 C 0.12 2.22 5.60 -4.97 -0.03 2.19 16 11 C -0.21 -4.66 5.42 -104.33 -0.56 -5.23 16 12 C -0.09 -1.93 9.67 -39.66 -0.38 -2.32 16 13 C -0.23 -5.69 9.80 -38.87 -0.38 -6.07 16 14 C 0.11 3.06 5.58 -106.82 -0.60 2.47 16 15 C -0.46 -12.54 9.05 -37.74 -0.34 -12.89 16 16 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 17 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 18 N -0.79 -20.81 10.95 55.55 0.61 -20.21 16 19 Si 0.91 18.93 29.60 -169.99 -5.03 13.90 16 20 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 C -0.17 -4.44 8.70 -38.87 -0.34 -4.78 16 24 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.53 6.81 -51.93 -0.35 0.18 16 30 H 0.37 3.57 7.19 45.56 0.33 3.90 16 31 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 32 H 0.05 0.46 6.68 -51.93 -0.35 0.11 16 33 H 0.06 0.71 6.72 -51.93 -0.35 0.37 16 34 H 0.34 5.64 8.27 -39.29 -0.33 5.31 16 35 H 0.06 1.06 7.37 -51.93 -0.38 0.68 16 36 H 0.02 0.27 7.99 -51.93 -0.42 -0.15 16 37 H 0.08 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 40 H 0.12 3.20 6.16 -52.48 -0.32 2.87 16 41 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -28.17 331.50 -9.21 -37.38 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -5.87 Total: 11.59 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -2.80 Total: -29.11 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: -0.07 Total: -31.58 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.45 Total: -7.17 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.17 -9.21 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399159439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.506 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds