Wall clock time and date at job start Mon Mar 30 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46828 * 2 1 4 4 H 1.08997 * 109.47275 * 304.99755 * 3 2 1 5 5 O 1.42895 * 109.47174 * 65.00555 * 3 2 1 6 6 C 1.53006 * 109.46949 * 184.99866 * 3 2 1 7 7 H 1.09000 * 109.46598 * 55.00123 * 6 3 2 8 8 C 1.52992 * 109.47183 * 295.00347 * 6 3 2 9 9 N 1.46893 * 109.46979 * 174.99799 * 6 3 2 10 10 C 1.46900 * 110.99998 * 205.00049 * 9 6 3 11 11 C 1.50707 * 109.47109 * 180.02562 * 10 9 6 12 12 C 1.38630 * 119.74947 * 269.72652 * 11 10 9 13 13 C 1.37622 * 120.24628 * 179.71756 * 12 11 10 14 14 C 1.40712 * 119.74245 * 0.58001 * 13 12 11 15 15 C 1.41398 * 120.24312 * 179.67889 * 14 13 12 16 16 H 1.08000 * 120.00193 * 24.40406 * 15 14 13 17 17 C 1.39944 * 120.00046 * 204.41165 * 15 14 13 18 18 N 1.30823 * 120.00177 * 17.84926 * 17 15 14 19 19 Si 1.86803 * 119.99930 * 197.85531 * 17 15 14 20 20 H 1.48495 * 109.47187 * 59.99862 * 19 17 15 21 21 H 1.48498 * 109.47047 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46927 * 299.99584 * 19 17 15 23 23 C 1.40719 * 119.51362 * 359.69808 * 14 13 12 24 24 C 1.37611 * 119.74218 * 359.97438 * 23 14 13 25 25 H 1.08997 * 109.46836 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47046 * 300.00031 * 1 2 3 27 27 H 1.09000 * 109.47077 * 59.99744 * 1 2 3 28 28 H 1.08996 * 109.47091 * 240.00405 * 2 1 3 29 29 H 1.08996 * 109.47081 * 119.99743 * 2 1 3 30 30 H 0.96698 * 114.00568 * 59.99703 * 5 3 2 31 31 H 1.09001 * 109.47413 * 179.97438 * 8 6 3 32 32 H 1.08999 * 109.47486 * 60.00101 * 8 6 3 33 33 H 1.09000 * 109.47171 * 299.99425 * 8 6 3 34 34 H 1.00901 * 111.00387 * 328.95725 * 9 6 3 35 35 H 1.09000 * 109.47617 * 300.00392 * 10 9 6 36 36 H 1.08995 * 109.47297 * 60.00424 * 10 9 6 37 37 H 1.08005 * 119.87579 * 359.97438 * 12 11 10 38 38 H 1.07997 * 120.13103 * 180.27905 * 13 12 11 39 39 H 0.96998 * 120.00406 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.12667 * 179.97438 * 23 14 13 41 41 H 1.08002 * 119.87205 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 1 3.8570 0.8801 -1.0113 8 6 4.1798 0.7976 1.1170 9 7 4.0445 2.8276 -0.2461 10 6 5.3393 2.8774 -0.9382 11 6 5.7986 4.3090 -1.0422 12 6 5.4446 5.0664 -2.1480 13 6 5.8536 6.3764 -2.2507 14 6 6.6441 6.9427 -1.2336 15 6 7.0758 8.2856 -1.3315 16 1 6.5189 8.9895 -1.9322 17 6 8.2248 8.7027 -0.6501 18 7 9.0866 7.8181 -0.2185 19 14 8.5279 10.5225 -0.3569 20 1 7.4116 11.0876 0.4428 21 1 9.8041 10.6990 0.3816 22 1 8.6088 11.2273 -1.6614 23 6 7.0021 6.1626 -0.1185 24 6 6.5762 4.8569 -0.0337 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0142 1.6542 2.0139 31 1 5.2661 0.7985 1.0273 32 1 3.8239 -0.2287 1.2063 33 1 3.8876 1.3619 2.0026 34 1 3.3628 3.4075 -0.7122 35 1 6.0740 2.3003 -0.3767 36 1 5.2334 2.4560 -1.9379 37 1 4.8422 4.6280 -2.9299 38 1 5.5730 6.9661 -3.1108 39 1 9.8832 8.1072 0.2535 40 1 7.6089 6.5871 0.6677 41 1 6.8501 4.2561 0.8210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399159439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:41 Heat of formation + Delta-G solvation = -70.741801 kcal Electronic energy + Delta-G solvation = -19379.669447 eV Core-core repulsion = 16450.354224 eV Total energy + Delta-G solvation = -2929.315223 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.99239 -39.28753 -36.61179 -35.32575 -33.69301 -32.46727 -31.18206 -30.39201 -27.98634 -27.07824 -24.85762 -22.88645 -22.72363 -21.61366 -21.21072 -19.21135 -17.77567 -17.18280 -16.86295 -16.51470 -16.03772 -15.80316 -15.63306 -15.26222 -14.89357 -14.32320 -14.08763 -13.81299 -13.61021 -13.39365 -13.28995 -13.14912 -12.83938 -12.73235 -12.70468 -12.61955 -12.36020 -12.12993 -12.06256 -11.74028 -11.51872 -11.42569 -11.22649 -11.00241 -10.63752 -9.33456 -9.31537 -9.11160 -8.63011 -6.32349 0.96623 1.16404 1.37336 1.48691 1.53597 2.20887 2.69999 3.25672 3.64741 3.78531 3.82278 4.03012 4.18945 4.28915 4.32313 4.40208 4.45764 4.57622 4.61030 4.65224 4.78090 4.84768 4.91048 4.99177 5.05374 5.07874 5.12591 5.16837 5.24264 5.39462 5.42275 5.47638 5.48069 5.72413 5.96156 6.11352 6.21167 6.31951 6.40442 6.54585 6.72327 6.91231 6.95339 7.05787 8.34021 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.040881 B = 0.003399 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.754337 B = 8235.230386 C = 8305.985013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.085 0.915 5 O -0.568 6.568 6 C 0.050 3.950 7 H 0.052 0.948 8 C -0.143 4.143 9 N -0.683 5.683 10 C 0.133 3.867 11 C -0.200 4.200 12 C -0.086 4.086 13 C -0.244 4.244 14 C 0.079 3.921 15 C -0.504 4.504 16 H 0.074 0.926 17 C 0.034 3.966 18 N -0.826 5.826 19 Si 0.982 3.018 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.259 1.259 23 C -0.192 4.192 24 C -0.086 4.086 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.381 0.619 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.337 0.663 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.288 0.712 40 H 0.098 0.902 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 -14.165 1.770 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.051 3.949 4 H 0.103 0.897 5 O -0.375 6.375 6 C -0.060 4.060 7 H 0.070 0.930 8 C -0.201 4.201 9 N -0.315 5.315 10 C 0.005 3.995 11 C -0.201 4.201 12 C -0.104 4.104 13 C -0.263 4.263 14 C 0.076 3.924 15 C -0.534 4.534 16 H 0.092 0.908 17 C -0.180 4.180 18 N -0.452 5.452 19 Si 0.803 3.197 20 H -0.186 1.186 21 H -0.191 1.191 22 H -0.183 1.183 23 C -0.211 4.211 24 C -0.104 4.104 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.231 0.769 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.156 0.844 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.085 -13.813 2.100 17.232 hybrid contribution 0.579 0.491 -0.534 0.928 sum -9.506 -13.322 1.566 16.441 Atomic orbital electron populations 1.21694 0.95083 1.01921 1.01827 1.22206 0.96994 0.95699 1.03758 1.22083 0.91531 0.93779 0.87555 0.89675 1.86565 1.76584 1.58231 1.16165 1.22321 0.95519 0.89348 0.98819 0.93036 1.21830 1.00642 1.00258 0.97346 1.60509 1.04459 1.09701 1.56788 1.20487 0.91275 0.92221 0.95506 1.19352 1.06696 0.96860 0.97234 1.20685 0.98919 0.93654 0.97182 1.21144 1.09197 0.96290 0.99707 1.17968 0.90233 0.93566 0.90595 1.19814 1.09568 0.95860 1.28141 0.90812 1.26768 0.94184 1.04639 0.92437 1.69876 1.08533 1.38184 1.28654 0.85258 0.78426 0.76469 0.79574 1.18621 1.19072 1.18284 1.21271 1.05589 0.95135 0.99125 1.20710 0.97496 0.94690 0.97547 0.91658 0.92898 0.93239 0.90352 0.90154 0.76945 0.93527 0.90157 0.92155 0.84429 0.91653 0.95091 0.86787 0.88692 0.90173 0.88428 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.81 71.98 0.71 -1.40 16 2 C -0.15 -2.09 5.24 30.60 0.16 -1.93 16 3 C 0.11 2.15 2.67 30.60 0.08 2.23 16 4 H 0.09 1.81 8.02 -2.39 -0.02 1.79 16 5 O -0.57 -12.95 12.72 -148.98 -1.89 -14.84 16 6 C 0.05 1.09 2.48 44.92 0.11 1.20 16 7 H 0.05 1.08 7.80 -2.39 -0.02 1.06 16 8 C -0.14 -2.78 8.75 71.98 0.63 -2.15 16 9 N -0.68 -20.38 6.25 -495.59 -3.10 -23.48 16 10 C 0.13 4.43 5.60 85.56 0.48 4.91 16 11 C -0.20 -8.57 5.42 -19.67 -0.11 -8.68 16 12 C -0.09 -3.79 9.67 22.22 0.21 -3.58 16 13 C -0.24 -12.36 9.80 22.73 0.22 -12.14 16 14 C 0.08 4.43 5.58 -21.29 -0.12 4.31 16 15 C -0.50 -28.28 9.05 23.46 0.21 -28.07 16 16 H 0.07 3.99 7.91 -2.91 -0.02 3.96 16 17 C 0.03 1.79 5.14 85.26 0.44 2.23 16 18 N -0.83 -44.66 10.95 21.83 0.24 -44.42 16 19 Si 0.98 39.39 29.60 68.60 2.03 41.42 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 C -0.19 -10.53 8.70 22.73 0.20 -10.34 16 24 C -0.09 -4.12 9.67 22.22 0.21 -3.91 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.84 7.82 -2.39 -0.02 0.83 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 0.95 6.81 -2.39 -0.02 0.93 16 30 H 0.38 6.62 7.19 -74.06 -0.53 6.09 16 31 H 0.05 1.03 7.45 -2.39 -0.02 1.01 16 32 H 0.08 1.11 6.68 -2.39 -0.02 1.10 16 33 H 0.06 1.21 6.72 -2.39 -0.02 1.20 16 34 H 0.34 10.55 8.27 -89.69 -0.74 9.81 16 35 H 0.07 2.14 7.37 -2.39 -0.02 2.12 16 36 H 0.03 0.95 7.99 -2.39 -0.02 0.93 16 37 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 39 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 40 H 0.10 5.63 6.16 -2.91 -0.02 5.61 16 41 H 0.10 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -62.02 331.50 0.47 -61.55 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -0.25 Total: 37.06 kcal Atomic # 6 Polarization: -60.74 SS G_CDS: 3.44 Total: -57.29 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -2.86 Total: -67.90 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.89 Total: -14.84 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -62.02 0.47 -61.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399159439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.194 kcal (2) G-P(sol) polarization free energy of solvation -62.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds