Wall clock time and date at job start Mon Mar 30 2020 06:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47414 * 2 1 4 4 H 1.09002 * 109.46563 * 304.99395 * 3 2 1 5 5 N 1.46900 * 109.47236 * 64.99544 * 3 2 1 6 6 C 1.46906 * 110.99938 * 205.00494 * 5 3 2 7 7 C 1.50696 * 109.47039 * 179.97438 * 6 5 3 8 8 C 1.38639 * 119.74723 * 89.99878 * 7 6 5 9 9 C 1.37622 * 120.24860 * 180.27284 * 8 7 6 10 10 C 1.40715 * 119.74171 * 359.52374 * 9 8 7 11 11 C 1.41399 * 120.24183 * 180.22515 * 10 9 8 12 12 H 1.07996 * 120.00044 * 204.52621 * 11 10 9 13 13 C 1.39950 * 119.99773 * 24.53568 * 11 10 9 14 14 N 1.30821 * 119.99991 * 17.71280 * 13 11 10 15 15 Si 1.86800 * 119.99756 * 197.70913 * 13 11 10 16 16 H 1.48502 * 109.46794 * 89.99841 * 15 13 11 17 17 H 1.48499 * 109.47177 * 209.99507 * 15 13 11 18 18 H 1.48492 * 109.47228 * 330.00168 * 15 13 11 19 19 C 1.40715 * 119.51175 * 0.47555 * 10 9 8 20 20 C 1.37615 * 119.74353 * 359.75047 * 19 10 9 21 21 C 1.52991 * 109.47510 * 184.99710 * 3 2 1 22 22 H 1.08991 * 109.47517 * 184.99617 * 21 3 2 23 23 C 1.53003 * 109.47051 * 64.99481 * 21 3 2 24 24 O 1.42902 * 109.47150 * 305.00056 * 21 3 2 25 25 H 1.09005 * 109.47598 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47566 * 300.00773 * 1 2 3 27 27 H 1.09003 * 109.47130 * 60.00574 * 1 2 3 28 28 H 1.08996 * 109.47152 * 239.99132 * 2 1 3 29 29 H 1.09003 * 109.46613 * 119.99330 * 2 1 3 30 30 H 1.00904 * 111.00051 * 328.95326 * 5 3 2 31 31 H 1.09001 * 109.47295 * 59.99652 * 6 5 3 32 32 H 1.09000 * 109.46602 * 299.99827 * 6 5 3 33 33 H 1.08000 * 119.87572 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.12750 * 179.72105 * 9 8 7 35 35 H 0.97005 * 119.99803 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.12426 * 179.73134 * 19 10 9 37 37 H 1.08002 * 119.87199 * 180.02562 * 20 19 10 38 38 H 1.09001 * 109.46950 * 180.02562 * 23 21 3 39 39 H 1.09004 * 109.47363 * 300.00412 * 23 21 3 40 40 H 1.09001 * 109.46911 * 60.00430 * 23 21 3 41 41 H 0.96697 * 114.00179 * 180.02562 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 7 1.6514 2.0993 1.2552 6 6 1.5725 3.5563 1.0844 7 6 1.1716 4.1940 2.3896 8 6 2.1480 4.5839 3.2933 9 6 1.7932 5.1621 4.4907 10 6 0.4339 5.3662 4.7917 11 6 0.0577 5.9637 6.0168 12 1 -0.9213 5.7746 6.4317 13 6 0.9540 6.8004 6.6916 14 7 1.9784 7.3092 6.0566 15 14 0.6874 7.1907 8.4988 16 1 1.3890 6.1811 9.3318 17 1 1.2273 8.5412 8.7985 18 1 -0.7657 7.1597 8.8028 19 6 -0.5485 4.9665 3.8670 20 6 -0.1707 4.3859 2.6778 21 6 3.5648 1.4443 -0.1256 22 1 3.9355 2.4654 -0.0366 23 6 3.9650 0.8734 -1.4876 24 8 4.1292 0.6404 0.9122 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 0.7797 1.7283 1.6026 31 1 0.8308 3.7932 0.3217 32 1 2.5455 3.9391 0.7763 33 1 3.1908 4.4289 3.0588 34 1 2.5553 5.4610 5.1952 35 1 2.5998 7.8888 6.5245 36 1 -1.5948 5.1144 4.0897 37 1 -0.9230 4.0787 1.9663 38 1 5.0513 0.8743 -1.5769 39 1 3.5943 -0.1478 -1.5767 40 1 3.5345 1.4866 -2.2793 41 1 5.0950 0.5963 0.8944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399266276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:50 Heat of formation + Delta-G solvation = -49.450619 kcal Electronic energy + Delta-G solvation = -19625.276184 eV Core-core repulsion = 16696.884216 eV Total energy + Delta-G solvation = -2928.391968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.66021 -37.47226 -35.48226 -33.86875 -32.33040 -30.70760 -29.71896 -29.16289 -26.72582 -25.02352 -22.97769 -22.60015 -20.90021 -19.92471 -19.71288 -17.24763 -16.93766 -15.72688 -15.39782 -15.27354 -14.64903 -14.09225 -14.01709 -13.76718 -13.44165 -13.09987 -12.76177 -12.55081 -12.48662 -12.18769 -11.89308 -11.76657 -11.66483 -11.46395 -11.23375 -11.06978 -10.89229 -10.67035 -10.46886 -10.34745 -10.27364 -9.76261 -9.52735 -9.31113 -9.09605 -7.91263 -7.38290 -7.25407 -6.71961 -4.30533 2.78860 3.09468 3.13108 3.13559 3.22387 3.96381 4.35736 4.46151 4.72781 4.86158 4.97625 5.13492 5.23108 5.37376 5.38874 5.62658 5.66790 5.76976 5.79324 5.87143 5.93039 5.96553 5.99778 6.12742 6.23699 6.30858 6.40943 6.43395 6.51544 7.01074 7.11707 7.35266 7.41589 7.51787 7.66882 7.82356 7.85617 7.96573 8.10967 8.21250 8.35373 8.69968 8.94448 9.03320 10.22657 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032620 B = 0.003906 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.168560 B = 7166.761208 C = 7571.844316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C 0.092 3.908 4 H 0.047 0.953 5 N -0.671 5.671 6 C 0.124 3.876 7 C -0.211 4.211 8 C -0.077 4.077 9 C -0.167 4.167 10 C 0.112 3.888 11 C -0.464 4.464 12 H 0.077 0.923 13 C 0.076 3.924 14 N -0.794 5.794 15 Si 0.907 3.093 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.228 4.228 20 C -0.086 4.086 21 C 0.112 3.888 22 H 0.052 0.948 23 C -0.188 4.188 24 O -0.547 6.547 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.341 0.659 31 H 0.016 0.984 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.280 0.720 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 -9.614 -10.991 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.159 4.159 3 C -0.018 4.018 4 H 0.065 0.935 5 N -0.304 5.304 6 C -0.004 4.004 7 C -0.212 4.212 8 C -0.096 4.096 9 C -0.186 4.186 10 C 0.110 3.890 11 C -0.494 4.494 12 H 0.095 0.905 13 C -0.141 4.141 14 N -0.419 5.419 15 Si 0.732 3.268 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.247 4.247 20 C -0.105 4.105 21 C 0.053 3.947 22 H 0.070 0.930 23 C -0.246 4.246 24 O -0.351 6.351 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.162 0.838 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 2.937 -9.502 -10.564 14.509 hybrid contribution -0.259 0.543 0.050 0.604 sum 2.678 -8.959 -10.514 14.070 Atomic orbital electron populations 1.21864 0.96300 1.01655 1.01745 1.21622 0.95086 0.96225 1.02961 1.21547 0.93077 0.94943 0.92234 0.93492 1.60591 1.38655 1.04348 1.26827 1.20618 0.98583 0.86414 0.94803 1.18888 0.93206 1.11431 0.97692 1.20486 0.96483 0.98148 0.94489 1.21316 0.96806 1.03411 0.97106 1.17620 0.91453 0.88411 0.91533 1.19602 1.00870 1.24500 1.04429 0.90532 1.25900 0.94125 0.94111 0.99974 1.69834 1.11826 1.23125 1.37126 0.86330 0.79821 0.78123 0.82532 1.19270 1.20373 1.18670 1.20920 0.97660 1.10512 0.95635 1.20342 0.94094 0.99688 0.96399 1.21757 0.93947 0.93487 0.85553 0.93000 1.22603 1.01435 1.02281 0.98301 1.86645 1.23964 1.71858 1.52647 0.92614 0.92316 0.93163 0.91817 0.90217 0.83807 0.96621 0.92271 0.89559 0.86556 0.90948 0.89213 0.90007 0.92531 0.91679 0.91961 0.78852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.74 37.16 0.36 -1.37 16 2 C -0.12 -1.44 5.11 -26.73 -0.14 -1.58 16 3 C 0.09 1.23 1.91 -67.72 -0.13 1.10 16 4 H 0.05 0.61 7.80 -51.93 -0.40 0.20 16 5 N -0.67 -11.14 6.25 -107.99 -0.67 -11.81 16 6 C 0.12 2.24 5.60 -4.97 -0.03 2.21 16 7 C -0.21 -4.67 5.41 -104.33 -0.56 -5.23 16 8 C -0.08 -1.86 9.67 -39.66 -0.38 -2.25 16 9 C -0.17 -4.46 8.70 -38.87 -0.34 -4.80 16 10 C 0.11 3.06 5.57 -106.82 -0.60 2.47 16 11 C -0.46 -12.58 9.06 -37.74 -0.34 -12.92 16 12 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 13 C 0.08 1.95 5.14 -17.34 -0.09 1.87 16 14 N -0.79 -20.87 10.95 55.55 0.61 -20.26 16 15 Si 0.91 18.98 29.59 -169.99 -5.03 13.95 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 18 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 19 C -0.23 -5.70 9.80 -38.87 -0.38 -6.09 16 20 C -0.09 -1.96 9.67 -39.67 -0.38 -2.34 16 21 C 0.11 1.39 3.42 -26.73 -0.09 1.30 16 22 H 0.05 0.69 7.35 -51.93 -0.38 0.31 16 23 C -0.19 -1.75 9.30 37.16 0.35 -1.40 16 24 O -0.55 -7.27 12.49 -35.23 -0.44 -7.71 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.66 6.34 -51.93 -0.33 0.33 16 29 H 0.08 1.09 7.73 -51.93 -0.40 0.69 16 30 H 0.34 5.71 6.46 -39.29 -0.25 5.46 16 31 H 0.02 0.27 7.99 -51.93 -0.42 -0.15 16 32 H 0.06 1.05 7.30 -51.93 -0.38 0.68 16 33 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 35 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 36 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.08 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.59 6.46 -51.93 -0.34 0.26 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.37 3.35 9.08 45.56 0.41 3.76 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -28.84 330.75 -8.96 -37.81 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -5.65 Total: 12.07 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -2.75 Total: -29.03 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: -0.07 Total: -32.07 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.44 Total: -7.71 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.84 -8.96 -37.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399266276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.646 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds