Wall clock time and date at job start Mon Mar 30 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47414 * 2 1 4 4 H 1.09002 * 109.46563 * 304.99395 * 3 2 1 5 5 N 1.46900 * 109.47236 * 64.99544 * 3 2 1 6 6 C 1.46906 * 110.99938 * 205.00494 * 5 3 2 7 7 C 1.50696 * 109.47039 * 179.97438 * 6 5 3 8 8 C 1.38639 * 119.74723 * 89.99878 * 7 6 5 9 9 C 1.37622 * 120.24860 * 180.27284 * 8 7 6 10 10 C 1.40715 * 119.74171 * 359.52374 * 9 8 7 11 11 C 1.41399 * 120.24183 * 180.22515 * 10 9 8 12 12 H 1.07996 * 120.00044 * 204.52621 * 11 10 9 13 13 C 1.39950 * 119.99773 * 24.53568 * 11 10 9 14 14 N 1.30821 * 119.99991 * 17.71280 * 13 11 10 15 15 Si 1.86800 * 119.99756 * 197.70913 * 13 11 10 16 16 H 1.48502 * 109.46794 * 89.99841 * 15 13 11 17 17 H 1.48499 * 109.47177 * 209.99507 * 15 13 11 18 18 H 1.48492 * 109.47228 * 330.00168 * 15 13 11 19 19 C 1.40715 * 119.51175 * 0.47555 * 10 9 8 20 20 C 1.37615 * 119.74353 * 359.75047 * 19 10 9 21 21 C 1.52991 * 109.47510 * 184.99710 * 3 2 1 22 22 H 1.08991 * 109.47517 * 184.99617 * 21 3 2 23 23 C 1.53003 * 109.47051 * 64.99481 * 21 3 2 24 24 O 1.42902 * 109.47150 * 305.00056 * 21 3 2 25 25 H 1.09005 * 109.47598 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47566 * 300.00773 * 1 2 3 27 27 H 1.09003 * 109.47130 * 60.00574 * 1 2 3 28 28 H 1.08996 * 109.47152 * 239.99132 * 2 1 3 29 29 H 1.09003 * 109.46613 * 119.99330 * 2 1 3 30 30 H 1.00904 * 111.00051 * 328.95326 * 5 3 2 31 31 H 1.09001 * 109.47295 * 59.99652 * 6 5 3 32 32 H 1.09000 * 109.46602 * 299.99827 * 6 5 3 33 33 H 1.08000 * 119.87572 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.12750 * 179.72105 * 9 8 7 35 35 H 0.97005 * 119.99803 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.12426 * 179.73134 * 19 10 9 37 37 H 1.08002 * 119.87199 * 180.02562 * 20 19 10 38 38 H 1.09001 * 109.46950 * 180.02562 * 23 21 3 39 39 H 1.09004 * 109.47363 * 300.00412 * 23 21 3 40 40 H 1.09001 * 109.46911 * 60.00430 * 23 21 3 41 41 H 0.96697 * 114.00179 * 180.02562 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 7 1.6514 2.0993 1.2552 6 6 1.5725 3.5563 1.0844 7 6 1.1716 4.1940 2.3896 8 6 2.1480 4.5839 3.2933 9 6 1.7932 5.1621 4.4907 10 6 0.4339 5.3662 4.7917 11 6 0.0577 5.9637 6.0168 12 1 -0.9213 5.7746 6.4317 13 6 0.9540 6.8004 6.6916 14 7 1.9784 7.3092 6.0566 15 14 0.6874 7.1907 8.4988 16 1 1.3890 6.1811 9.3318 17 1 1.2273 8.5412 8.7985 18 1 -0.7657 7.1597 8.8028 19 6 -0.5485 4.9665 3.8670 20 6 -0.1707 4.3859 2.6778 21 6 3.5648 1.4443 -0.1256 22 1 3.9355 2.4654 -0.0366 23 6 3.9650 0.8734 -1.4876 24 8 4.1292 0.6404 0.9122 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 0.7797 1.7283 1.6026 31 1 0.8308 3.7932 0.3217 32 1 2.5455 3.9391 0.7763 33 1 3.1908 4.4289 3.0588 34 1 2.5553 5.4610 5.1952 35 1 2.5998 7.8888 6.5245 36 1 -1.5948 5.1144 4.0897 37 1 -0.9230 4.0787 1.9663 38 1 5.0513 0.8743 -1.5769 39 1 3.5943 -0.1478 -1.5767 40 1 3.5345 1.4866 -2.2793 41 1 5.0950 0.5963 0.8944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399266276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:49 Heat of formation + Delta-G solvation = -68.132234 kcal Electronic energy + Delta-G solvation = -19626.086279 eV Core-core repulsion = 16696.884216 eV Total energy + Delta-G solvation = -2929.202063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91050 -39.11535 -36.69559 -35.59168 -33.73746 -31.59991 -31.42324 -31.04324 -28.24900 -26.33457 -24.52280 -23.55517 -22.83406 -21.63465 -20.83406 -19.20932 -17.90351 -17.19817 -16.97940 -16.45346 -15.96851 -15.64799 -15.41450 -15.17061 -14.86115 -14.33527 -14.19675 -13.94228 -13.77873 -13.44079 -13.32559 -13.07388 -13.03847 -12.75406 -12.72790 -12.55528 -12.28193 -12.23798 -11.88490 -11.61446 -11.40265 -11.31379 -11.19292 -11.00658 -10.70824 -9.33378 -9.29275 -9.07881 -8.62719 -6.32324 0.96215 1.16486 1.37702 1.51117 1.52099 2.21220 2.70656 3.35807 3.50671 3.80335 3.94327 4.04221 4.25002 4.28771 4.33031 4.37811 4.51963 4.56435 4.58237 4.64223 4.75684 4.81323 4.88547 5.03322 5.05457 5.07862 5.11944 5.17282 5.29468 5.35254 5.39726 5.47908 5.48568 5.72608 5.96343 6.11749 6.23554 6.34209 6.40513 6.59238 6.72605 6.95603 7.05789 7.06515 8.34509 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032620 B = 0.003906 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.168560 B = 7166.761208 C = 7571.844316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C 0.089 3.911 4 H 0.059 0.941 5 N -0.684 5.684 6 C 0.132 3.868 7 C -0.199 4.199 8 C -0.085 4.085 9 C -0.192 4.192 10 C 0.079 3.921 11 C -0.504 4.504 12 H 0.074 0.926 13 C 0.035 3.965 14 N -0.827 5.827 15 Si 0.983 3.017 16 H -0.263 1.263 17 H -0.267 1.267 18 H -0.258 1.258 19 C -0.243 4.243 20 C -0.085 4.085 21 C 0.109 3.891 22 H 0.038 0.962 23 C -0.179 4.179 24 O -0.570 6.570 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.339 0.661 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.287 0.713 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.649 -10.559 -12.419 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.021 4.021 4 H 0.077 0.923 5 N -0.317 5.317 6 C 0.004 3.996 7 C -0.200 4.200 8 C -0.104 4.104 9 C -0.211 4.211 10 C 0.077 3.923 11 C -0.534 4.534 12 H 0.092 0.908 13 C -0.180 4.180 14 N -0.453 5.453 15 Si 0.803 3.197 16 H -0.188 1.188 17 H -0.191 1.191 18 H -0.182 1.182 19 C -0.263 4.263 20 C -0.104 4.104 21 C 0.050 3.950 22 H 0.056 0.944 23 C -0.237 4.237 24 O -0.376 6.376 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.845 -10.458 -12.016 16.182 hybrid contribution -0.192 0.753 0.347 0.851 sum 2.653 -9.705 -11.669 15.407 Atomic orbital electron populations 1.21850 0.95588 1.02446 1.01494 1.21556 0.95653 0.95107 1.02848 1.21708 0.93957 0.95541 0.90895 0.92349 1.60513 1.38676 1.03381 1.29131 1.20493 0.99152 0.87335 0.92613 1.19336 0.92663 1.09416 0.98622 1.20696 0.97681 0.97886 0.94147 1.21267 0.96458 1.05255 0.98133 1.17963 0.92197 0.89563 0.92571 1.19849 1.01640 1.26235 1.05639 0.90789 1.26763 0.93483 0.93318 1.04403 1.69888 1.12692 1.23667 1.39034 0.85201 0.79870 0.78300 0.76303 1.18797 1.19112 1.18169 1.21151 0.97715 1.11026 0.96380 1.20677 0.95182 0.98483 0.96040 1.21797 0.93231 0.93008 0.87014 0.94365 1.22503 1.02456 1.02335 0.96371 1.86597 1.25639 1.71969 1.53439 0.91392 0.93719 0.92160 0.89877 0.92295 0.84041 0.94899 0.91953 0.88509 0.88491 0.90211 0.88592 0.86688 0.91184 0.91252 0.91046 0.77022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.74 71.98 0.70 -2.35 16 2 C -0.11 -2.44 5.11 30.59 0.16 -2.29 16 3 C 0.09 2.16 1.91 44.91 0.09 2.24 16 4 H 0.06 1.31 7.80 -2.39 -0.02 1.29 16 5 N -0.68 -21.54 6.25 -495.58 -3.10 -24.64 16 6 C 0.13 4.52 5.60 85.55 0.48 5.00 16 7 C -0.20 -8.64 5.41 -19.68 -0.11 -8.74 16 8 C -0.09 -4.17 9.67 22.22 0.21 -3.95 16 9 C -0.19 -10.61 8.70 22.73 0.20 -10.41 16 10 C 0.08 4.47 5.57 -21.29 -0.12 4.35 16 11 C -0.50 -28.30 9.06 23.46 0.21 -28.09 16 12 H 0.07 4.01 7.91 -2.91 -0.02 3.99 16 13 C 0.03 1.82 5.14 85.26 0.44 2.26 16 14 N -0.83 -44.78 10.95 21.83 0.24 -44.54 16 15 Si 0.98 39.47 29.59 68.60 2.03 41.50 16 16 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 17 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 18 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 19 C -0.24 -12.33 9.80 22.73 0.22 -12.11 16 20 C -0.09 -3.78 9.67 22.21 0.21 -3.56 16 21 C 0.11 2.47 3.42 30.59 0.10 2.58 16 22 H 0.04 0.96 7.35 -2.39 -0.02 0.94 16 23 C -0.18 -2.78 9.30 71.98 0.67 -2.11 16 24 O -0.57 -14.34 12.49 -148.98 -1.86 -16.20 16 25 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.04 0.99 6.43 -2.39 -0.02 0.98 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.46 6.34 -2.39 -0.02 1.45 16 29 H 0.06 1.53 7.73 -2.39 -0.02 1.51 16 30 H 0.34 10.84 6.46 -89.69 -0.58 10.26 16 31 H 0.03 1.03 7.99 -2.39 -0.02 1.01 16 32 H 0.06 2.10 7.30 -2.39 -0.02 2.09 16 33 H 0.10 4.42 8.06 -2.91 -0.02 4.39 16 34 H 0.10 5.64 6.16 -2.91 -0.02 5.62 16 35 H 0.29 14.04 8.30 -92.70 -0.77 13.27 16 36 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.03 6.46 -2.38 -0.02 1.02 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.38 6.46 9.08 -74.06 -0.67 5.79 16 Total: -1.00 -63.48 330.75 0.56 -62.92 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: -0.23 Total: 38.14 kcal Atomic # 6 Polarization: -60.65 SS G_CDS: 3.47 Total: -57.18 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -2.86 Total: -69.18 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -1.86 Total: -16.20 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -63.48 0.56 -62.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399266276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.214 kcal (2) G-P(sol) polarization free energy of solvation -63.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds