Wall clock time and date at job start Mon Mar 30 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00191 * 2 1 4 4 H 1.08995 * 109.47406 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46404 * 299.99482 * 3 2 1 6 6 O 1.42897 * 109.47198 * 294.99977 * 5 3 2 7 7 C 1.35683 * 116.99685 * 180.02562 * 6 5 3 8 8 C 1.39305 * 119.81261 * 180.02562 * 7 6 5 9 9 C 1.36441 * 120.18225 * 179.72110 * 8 7 6 10 10 C 1.40834 * 119.80994 * 0.26831 * 9 8 7 11 11 C 1.41215 * 120.17646 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00196 * 204.54801 * 11 10 9 13 13 C 1.39888 * 120.00093 * 24.55741 * 11 10 9 14 14 N 1.30881 * 120.00110 * 17.92429 * 13 11 10 15 15 Si 1.86803 * 119.99833 * 197.92928 * 13 11 10 16 16 H 1.48503 * 109.47208 * 59.99802 * 15 13 11 17 17 H 1.48511 * 109.47031 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47221 * 299.99522 * 15 13 11 19 19 C 1.40829 * 119.64178 * 0.02562 * 10 9 8 20 20 C 1.36431 * 119.81319 * 359.97438 * 19 10 9 21 21 C 1.52992 * 109.47183 * 59.99379 * 3 2 1 22 22 C 1.52996 * 109.47104 * 60.00364 * 21 3 2 23 23 C 1.53000 * 109.47071 * 180.02562 * 21 3 2 24 24 H 1.08995 * 109.47148 * 300.00448 * 1 2 3 25 25 H 1.08999 * 109.46686 * 60.00433 * 1 2 3 26 26 H 1.09005 * 109.46849 * 180.02562 * 1 2 3 27 27 H 1.00899 * 111.00154 * 236.03982 * 2 1 3 28 28 H 1.09005 * 109.46782 * 174.99957 * 5 3 2 29 29 H 1.09002 * 109.47300 * 55.00501 * 5 3 2 30 30 H 1.08000 * 119.91135 * 359.97438 * 8 7 6 31 31 H 1.07999 * 120.09455 * 180.29138 * 9 8 7 32 32 H 0.97005 * 119.99879 * 180.02562 * 14 13 11 33 33 H 1.07999 * 120.09144 * 180.02562 * 19 10 9 34 34 H 1.08003 * 119.90891 * 180.02562 * 20 19 10 35 35 H 1.09000 * 109.47424 * 300.00009 * 21 3 2 36 36 H 1.09004 * 109.46932 * 60.00221 * 22 21 3 37 37 H 1.09003 * 109.47191 * 179.97438 * 22 21 3 38 38 H 1.08994 * 109.47424 * 299.99938 * 22 21 3 39 39 H 1.09004 * 109.47302 * 299.99985 * 23 21 3 40 40 H 1.08997 * 109.47764 * 60.00090 * 23 21 3 41 41 H 1.09003 * 109.47486 * 180.02562 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 3.0851 1.3424 0.0005 5 6 1.5049 2.1059 -1.2494 6 8 2.0585 1.4884 -2.4131 7 6 1.7208 2.0228 -3.6137 8 6 2.2268 1.4665 -4.7863 9 6 1.8876 1.9943 -5.9979 10 6 1.0280 3.1081 -6.0605 11 6 0.6715 3.6603 -7.3104 12 1 0.3661 4.6942 -7.3767 13 6 0.7136 2.8682 -8.4626 14 7 0.7348 1.5636 -8.3595 15 14 0.7396 3.6724 -10.1484 16 1 1.9398 4.5392 -10.2649 17 1 0.7845 2.6221 -11.1973 18 1 -0.4842 4.4953 -10.3233 19 6 0.5259 3.6682 -4.8699 20 6 0.8748 3.1284 -3.6665 21 6 1.5049 2.1061 1.2491 22 6 1.9953 1.3716 2.4984 23 6 2.0527 3.5346 1.2487 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8306 -0.5262 -0.7813 28 1 1.8212 3.1481 -1.2058 29 1 0.4169 2.0580 -1.2953 30 1 2.8861 0.6125 -4.7365 31 1 2.2769 1.5590 -6.9064 32 1 0.7643 1.0144 -9.1585 33 1 -0.1341 4.5221 -4.9094 34 1 0.4903 3.5564 -2.7525 35 1 0.4152 2.1352 1.2490 36 1 3.0850 1.3426 2.4984 37 1 1.6462 1.8952 3.3883 38 1 1.6048 0.3540 2.4985 39 1 3.1424 3.5059 1.2486 40 1 1.7030 4.0578 0.3588 41 1 1.7035 4.0580 2.1389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403357863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:18 Heat of formation + Delta-G solvation = -31.364173 kcal Electronic energy + Delta-G solvation = -19783.721575 eV Core-core repulsion = 16856.113894 eV Total energy + Delta-G solvation = -2927.607681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.34165 -37.83374 -36.06402 -33.48822 -33.25167 -29.99785 -29.15882 -28.44298 -27.02562 -25.34873 -24.69999 -22.85662 -20.93314 -20.53423 -19.19065 -17.34584 -17.01841 -16.42060 -15.50891 -15.20272 -14.98303 -14.63819 -13.97539 -13.75331 -13.43871 -13.18751 -12.89662 -12.56384 -12.28526 -12.21577 -12.11904 -12.01152 -11.72320 -11.50182 -11.30212 -11.12092 -10.95530 -10.90259 -10.81401 -10.59107 -10.39310 -9.93774 -9.81996 -9.37107 -9.02818 -8.32121 -7.66129 -7.04733 -6.73816 -4.27156 2.77655 2.93518 3.06853 3.09313 3.21192 3.92286 3.95165 4.35327 4.60329 4.86424 4.93244 5.11712 5.27838 5.35983 5.43647 5.53803 5.59649 5.64626 5.69216 5.70786 5.82000 5.91432 5.97704 5.99893 6.06652 6.09170 6.20996 6.31639 6.34213 6.70458 6.96307 7.03884 7.10277 7.17066 7.44417 7.46172 7.54040 7.78409 7.98563 8.18785 8.43438 8.63488 8.88349 8.97124 10.20634 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.044395 B = 0.003767 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.551999 B = 7431.779861 C = 7716.658370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.681 5.681 3 C 0.094 3.906 4 H 0.088 0.912 5 C 0.029 3.971 6 O -0.329 6.329 7 C -0.008 4.008 8 C -0.120 4.120 9 C -0.134 4.134 10 C 0.089 3.911 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.075 3.925 14 N -0.799 5.799 15 Si 0.908 3.092 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.199 4.199 20 C -0.166 4.166 21 C -0.087 4.087 22 C -0.135 4.135 23 C -0.153 4.153 24 H 0.064 0.936 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.351 0.649 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.281 0.719 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 -0.459 13.519 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.311 5.311 3 C -0.016 4.016 4 H 0.106 0.894 5 C -0.049 4.049 6 O -0.245 6.245 7 C -0.051 4.051 8 C -0.139 4.139 9 C -0.153 4.153 10 C 0.086 3.914 11 C -0.495 4.495 12 H 0.094 0.906 13 C -0.142 4.142 14 N -0.425 5.425 15 Si 0.732 3.268 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.219 4.219 20 C -0.185 4.185 21 C -0.106 4.106 22 C -0.192 4.192 23 C -0.211 4.211 24 H 0.082 0.918 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.169 0.831 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.201 -0.926 14.086 14.168 hybrid contribution -0.517 0.835 -1.778 2.031 sum 0.684 -0.092 12.308 12.327 Atomic orbital electron populations 1.22293 0.88696 1.01693 1.00575 1.60639 1.07631 1.13019 1.49800 1.21665 1.00310 0.88099 0.91521 0.89356 1.23346 0.98060 0.97590 0.85867 1.85758 1.69972 1.56380 1.12365 1.18572 1.04726 0.98139 0.83672 1.19830 1.02677 1.00801 0.90599 1.20975 0.99512 0.99294 0.95526 1.17584 0.89830 0.91635 0.92307 1.19436 1.40607 0.98128 0.91292 0.90593 1.25875 0.92342 0.94502 1.01436 1.69827 1.35908 1.05005 1.31747 0.86381 0.79926 0.79751 0.80714 1.18869 1.20365 1.19092 1.20562 1.05269 1.03808 0.92220 1.20392 1.02360 0.98277 0.97484 1.21087 1.00485 0.94618 0.94424 1.21681 1.01047 1.00911 0.95580 1.21951 1.01443 0.95856 1.01862 0.91772 0.95223 0.91743 0.83091 0.92589 0.93038 0.88539 0.85683 0.90855 0.88801 0.89038 0.91143 0.92947 0.93484 0.91422 0.92384 0.92296 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.92 60.06 0.60 0.80 16 2 N -0.68 -8.76 6.03 -114.01 -0.69 -9.44 16 3 C 0.09 1.23 2.37 -67.71 -0.16 1.07 16 4 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 5 C 0.03 0.46 3.72 37.16 0.14 0.60 16 6 O -0.33 -6.60 9.79 -18.75 -0.18 -6.78 16 7 C -0.01 -0.19 6.71 -38.79 -0.26 -0.45 16 8 C -0.12 -2.92 9.92 -39.83 -0.40 -3.31 16 9 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 10 C 0.09 2.39 5.57 -106.81 -0.60 1.79 16 11 C -0.46 -12.40 9.04 -37.83 -0.34 -12.75 16 12 H 0.08 1.94 7.91 -52.48 -0.41 1.53 16 13 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 14 N -0.80 -20.73 10.96 55.54 0.61 -20.13 16 15 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 16 16 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 C -0.20 -4.94 9.74 -39.25 -0.38 -5.33 16 20 C -0.17 -3.81 8.96 -39.83 -0.36 -4.17 16 21 C -0.09 -0.94 2.13 -90.63 -0.19 -1.14 16 22 C -0.13 -1.31 9.04 37.16 0.34 -0.98 16 23 C -0.15 -1.55 8.85 37.16 0.33 -1.22 16 24 H 0.06 0.70 6.30 -51.93 -0.33 0.37 16 25 H 0.03 0.41 6.20 -51.93 -0.32 0.09 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.35 4.84 8.57 -39.29 -0.34 4.50 16 28 H 0.06 0.89 5.66 -51.93 -0.29 0.59 16 29 H 0.05 0.85 5.67 -51.93 -0.29 0.55 16 30 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 31 H 0.13 3.35 6.16 -52.49 -0.32 3.03 16 32 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 33 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 34 H 0.09 1.85 6.27 -52.48 -0.33 1.52 16 35 H 0.07 0.77 6.40 -51.93 -0.33 0.44 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.70 7.60 -51.93 -0.39 0.31 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.64 6.32 -51.93 -0.33 0.31 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 323.78 15.07 4.88 4.88 Total: -1.00 -27.38 323.78 -8.34 -35.72 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.21 Total: 9.17 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: -1.72 Total: -27.11 kcal Atomic # 7 Polarization: -29.49 SS G_CDS: -0.08 Total: -29.57 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.18 Total: -6.78 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.38 -8.34 -35.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403357863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.354 kcal (2) G-P(sol) polarization free energy of solvation -27.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds