Wall clock time and date at job start Mon Mar 30 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00191 * 2 1 4 4 H 1.08995 * 109.47406 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46404 * 299.99482 * 3 2 1 6 6 O 1.42897 * 109.47198 * 294.99977 * 5 3 2 7 7 C 1.35683 * 116.99685 * 180.02562 * 6 5 3 8 8 C 1.39305 * 119.81261 * 180.02562 * 7 6 5 9 9 C 1.36441 * 120.18225 * 179.72110 * 8 7 6 10 10 C 1.40834 * 119.80994 * 0.26831 * 9 8 7 11 11 C 1.41215 * 120.17646 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00196 * 204.54801 * 11 10 9 13 13 C 1.39888 * 120.00093 * 24.55741 * 11 10 9 14 14 N 1.30881 * 120.00110 * 17.92429 * 13 11 10 15 15 Si 1.86803 * 119.99833 * 197.92928 * 13 11 10 16 16 H 1.48503 * 109.47208 * 59.99802 * 15 13 11 17 17 H 1.48511 * 109.47031 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47221 * 299.99522 * 15 13 11 19 19 C 1.40829 * 119.64178 * 0.02562 * 10 9 8 20 20 C 1.36431 * 119.81319 * 359.97438 * 19 10 9 21 21 C 1.52992 * 109.47183 * 59.99379 * 3 2 1 22 22 C 1.52996 * 109.47104 * 60.00364 * 21 3 2 23 23 C 1.53000 * 109.47071 * 180.02562 * 21 3 2 24 24 H 1.08995 * 109.47148 * 300.00448 * 1 2 3 25 25 H 1.08999 * 109.46686 * 60.00433 * 1 2 3 26 26 H 1.09005 * 109.46849 * 180.02562 * 1 2 3 27 27 H 1.00899 * 111.00154 * 236.03982 * 2 1 3 28 28 H 1.09005 * 109.46782 * 174.99957 * 5 3 2 29 29 H 1.09002 * 109.47300 * 55.00501 * 5 3 2 30 30 H 1.08000 * 119.91135 * 359.97438 * 8 7 6 31 31 H 1.07999 * 120.09455 * 180.29138 * 9 8 7 32 32 H 0.97005 * 119.99879 * 180.02562 * 14 13 11 33 33 H 1.07999 * 120.09144 * 180.02562 * 19 10 9 34 34 H 1.08003 * 119.90891 * 180.02562 * 20 19 10 35 35 H 1.09000 * 109.47424 * 300.00009 * 21 3 2 36 36 H 1.09004 * 109.46932 * 60.00221 * 22 21 3 37 37 H 1.09003 * 109.47191 * 179.97438 * 22 21 3 38 38 H 1.08994 * 109.47424 * 299.99938 * 22 21 3 39 39 H 1.09004 * 109.47302 * 299.99985 * 23 21 3 40 40 H 1.08997 * 109.47764 * 60.00090 * 23 21 3 41 41 H 1.09003 * 109.47486 * 180.02562 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 3.0851 1.3424 0.0005 5 6 1.5049 2.1059 -1.2494 6 8 2.0585 1.4884 -2.4131 7 6 1.7208 2.0228 -3.6137 8 6 2.2268 1.4665 -4.7863 9 6 1.8876 1.9943 -5.9979 10 6 1.0280 3.1081 -6.0605 11 6 0.6715 3.6603 -7.3104 12 1 0.3661 4.6942 -7.3767 13 6 0.7136 2.8682 -8.4626 14 7 0.7348 1.5636 -8.3595 15 14 0.7396 3.6724 -10.1484 16 1 1.9398 4.5392 -10.2649 17 1 0.7845 2.6221 -11.1973 18 1 -0.4842 4.4953 -10.3233 19 6 0.5259 3.6682 -4.8699 20 6 0.8748 3.1284 -3.6665 21 6 1.5049 2.1061 1.2491 22 6 1.9953 1.3716 2.4984 23 6 2.0527 3.5346 1.2487 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8306 -0.5262 -0.7813 28 1 1.8212 3.1481 -1.2058 29 1 0.4169 2.0580 -1.2953 30 1 2.8861 0.6125 -4.7365 31 1 2.2769 1.5590 -6.9064 32 1 0.7643 1.0144 -9.1585 33 1 -0.1341 4.5221 -4.9094 34 1 0.4903 3.5564 -2.7525 35 1 0.4152 2.1352 1.2490 36 1 3.0850 1.3426 2.4984 37 1 1.6462 1.8952 3.3883 38 1 1.6048 0.3540 2.4985 39 1 3.1424 3.5059 1.2486 40 1 1.7030 4.0578 0.3588 41 1 1.7035 4.0580 2.1389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403357863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:18 Heat of formation + Delta-G solvation = -46.570633 kcal Electronic energy + Delta-G solvation = -19784.380977 eV Core-core repulsion = 16856.113894 eV Total energy + Delta-G solvation = -2928.267082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.83655 -39.26432 -37.69648 -35.20807 -34.33944 -31.82449 -31.00604 -29.74812 -27.86915 -26.80905 -26.22623 -24.04072 -22.74361 -22.28459 -20.22675 -19.24892 -18.68517 -17.51639 -17.10478 -16.65301 -16.47331 -15.77958 -15.70492 -14.95076 -14.85209 -14.71954 -14.18618 -14.06567 -13.81316 -13.55947 -13.37652 -13.11983 -12.92728 -12.88257 -12.79423 -12.59789 -12.50435 -12.28935 -11.88268 -11.79722 -11.72447 -11.44793 -11.37991 -11.19029 -10.88360 -9.59855 -9.40534 -8.95665 -8.61907 -6.25609 0.92703 0.99100 1.38700 1.49587 1.53576 2.21455 2.49996 2.70442 3.31177 3.66975 3.84860 3.95431 4.06762 4.17433 4.24771 4.29584 4.34637 4.44498 4.53547 4.61608 4.74046 4.83250 4.86656 4.91356 5.03118 5.04044 5.05285 5.13688 5.18253 5.25536 5.26561 5.45352 5.53344 5.56077 5.61869 5.85610 6.01163 6.02715 6.23429 6.36307 6.53374 6.76717 6.92352 7.06125 8.34613 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.044395 B = 0.003767 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.551999 B = 7431.779861 C = 7716.658370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.679 5.679 3 C 0.101 3.899 4 H 0.085 0.915 5 C 0.025 3.975 6 O -0.333 6.333 7 C 0.000 4.000 8 C -0.131 4.131 9 C -0.152 4.152 10 C 0.057 3.943 11 C -0.501 4.501 12 H 0.076 0.924 13 C 0.034 3.966 14 N -0.830 5.830 15 Si 0.983 3.017 16 H -0.261 1.261 17 H -0.268 1.268 18 H -0.260 1.260 19 C -0.210 4.210 20 C -0.166 4.166 21 C -0.082 4.082 22 C -0.130 4.130 23 C -0.153 4.153 24 H 0.079 0.921 25 H 0.009 0.991 26 H 0.074 0.926 27 H 0.344 0.656 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.288 0.712 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.904 -0.039 14.750 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.307 5.307 3 C -0.010 4.010 4 H 0.103 0.897 5 C -0.052 4.052 6 O -0.249 6.249 7 C -0.043 4.043 8 C -0.150 4.150 9 C -0.171 4.171 10 C 0.055 3.945 11 C -0.531 4.531 12 H 0.094 0.906 13 C -0.180 4.180 14 N -0.457 5.457 15 Si 0.803 3.197 16 H -0.185 1.185 17 H -0.192 1.192 18 H -0.184 1.184 19 C -0.230 4.230 20 C -0.184 4.184 21 C -0.101 4.101 22 C -0.187 4.187 23 C -0.211 4.211 24 H 0.097 0.903 25 H 0.027 0.973 26 H 0.093 0.907 27 H 0.161 0.839 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.058 -0.511 15.353 15.398 hybrid contribution -0.474 0.654 -1.975 2.134 sum 0.585 0.144 13.378 13.392 Atomic orbital electron populations 1.22327 0.88076 1.02381 1.00251 1.60685 1.08096 1.12699 1.49244 1.21725 1.00138 0.88097 0.91048 0.89694 1.23665 0.98014 0.98257 0.85282 1.85766 1.70097 1.56646 1.12350 1.18652 1.03507 0.97536 0.84642 1.20008 1.03040 1.01297 0.90674 1.20912 1.00441 0.99977 0.95819 1.17935 0.90721 0.92494 0.93394 1.19704 1.42491 0.98514 0.92394 0.90597 1.26740 0.91254 0.94868 1.05110 1.69881 1.36227 1.06334 1.33235 0.85249 0.80027 0.78828 0.75564 1.18526 1.19219 1.18395 1.20787 1.05507 1.04252 0.92450 1.20649 1.01832 0.97973 0.97977 1.21082 1.00584 0.94876 0.93591 1.21634 1.01049 1.00516 0.95498 1.21951 1.01574 0.95320 1.02208 0.90271 0.97268 0.90679 0.83850 0.92100 0.93165 0.87162 0.87104 0.90130 0.87841 0.86188 0.90948 0.92911 0.91897 0.92080 0.92210 0.93297 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.92 127.69 1.27 1.70 16 2 N -0.68 -16.40 6.03 -514.62 -3.10 -19.50 16 3 C 0.10 2.44 2.37 44.91 0.11 2.55 16 4 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 5 C 0.02 0.76 3.72 71.98 0.27 1.03 16 6 O -0.33 -13.03 9.79 -90.01 -0.88 -13.91 16 7 C 0.00 0.02 6.71 22.79 0.15 0.17 16 8 C -0.13 -6.46 9.92 22.11 0.22 -6.24 16 9 C -0.15 -8.21 8.64 22.49 0.19 -8.02 16 10 C 0.06 3.13 5.57 -21.28 -0.12 3.01 16 11 C -0.50 -27.41 9.04 23.40 0.21 -27.20 16 12 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 13 C 0.03 1.75 5.13 85.23 0.44 2.19 16 14 N -0.83 -43.96 10.96 21.82 0.24 -43.72 16 15 Si 0.98 38.48 29.60 68.60 2.03 40.51 16 16 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 17 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 18 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 19 C -0.21 -10.54 9.74 22.48 0.22 -10.32 16 20 C -0.17 -7.49 8.96 22.11 0.20 -7.29 16 21 C -0.08 -1.58 2.13 -10.80 -0.02 -1.60 16 22 C -0.13 -2.17 9.04 71.98 0.65 -1.52 16 23 C -0.15 -2.71 8.85 71.98 0.64 -2.08 16 24 H 0.08 1.54 6.30 -2.39 -0.02 1.52 16 25 H 0.01 0.24 6.20 -2.39 -0.01 0.22 16 26 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.34 9.13 8.57 -89.69 -0.77 8.37 16 28 H 0.06 1.82 5.66 -2.38 -0.01 1.81 16 29 H 0.05 1.57 5.67 -2.39 -0.01 1.56 16 30 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 31 H 0.11 6.20 6.16 -2.91 -0.02 6.18 16 32 H 0.29 13.81 8.30 -92.70 -0.77 13.04 16 33 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 34 H 0.12 4.64 6.27 -2.91 -0.02 4.63 16 35 H 0.07 1.38 6.40 -2.39 -0.02 1.37 16 36 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 1.12 7.60 -2.39 -0.02 1.10 16 39 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.05 0.96 6.32 -2.39 -0.02 0.95 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -58.95 323.78 2.96 -55.99 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.26 Total: 34.25 kcal Atomic # 6 Polarization: -58.04 SS G_CDS: 4.42 Total: -53.62 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -2.86 Total: -63.22 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.88 Total: -13.91 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -58.95 2.96 -55.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403357863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.418 kcal (2) G-P(sol) polarization free energy of solvation -58.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds