Wall clock time and date at job start Mon Mar 30 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46903 * 111.00304 * 2 1 4 4 H 1.08997 * 109.47523 * 180.79347 * 3 2 1 5 5 C 1.52998 * 109.47048 * 60.78937 * 3 2 1 6 6 O 1.42901 * 109.47076 * 65.00302 * 5 3 2 7 7 C 1.35671 * 116.99702 * 180.02562 * 6 5 3 8 8 C 1.39313 * 119.82267 * 359.71852 * 7 6 5 9 9 C 1.36436 * 120.18981 * 179.76041 * 8 7 6 10 10 C 1.40832 * 119.80598 * 0.52334 * 9 8 7 11 11 C 1.41222 * 120.17603 * 179.71859 * 10 9 8 12 12 H 1.07997 * 119.99953 * 23.69344 * 11 10 9 13 13 C 1.39893 * 119.99698 * 203.69670 * 11 10 9 14 14 N 1.30875 * 120.00154 * 18.41605 * 13 11 10 15 15 Si 1.86799 * 119.99825 * 198.42349 * 13 11 10 16 16 H 1.48497 * 109.47428 * 59.99399 * 15 13 11 17 17 H 1.48502 * 109.47187 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46994 * 299.99955 * 15 13 11 19 19 C 1.40833 * 119.64684 * 359.73167 * 10 9 8 20 20 C 1.36434 * 119.80890 * 0.02562 * 19 10 9 21 21 C 1.53008 * 109.46484 * 300.79138 * 3 2 1 22 22 C 1.53006 * 109.46650 * 184.63714 * 21 3 2 23 23 C 1.52996 * 109.47314 * 304.63610 * 21 3 2 24 24 H 1.08997 * 109.47357 * 60.11706 * 1 2 3 25 25 H 1.09011 * 109.47051 * 180.11388 * 1 2 3 26 26 H 1.08997 * 109.47309 * 300.11381 * 1 2 3 27 27 H 1.00899 * 111.00150 * 123.95764 * 2 1 3 28 28 H 1.08999 * 109.47185 * 185.01043 * 5 3 2 29 29 H 1.09006 * 109.46768 * 305.00664 * 5 3 2 30 30 H 1.08003 * 119.90442 * 0.03449 * 8 7 6 31 31 H 1.08004 * 120.09676 * 180.25958 * 9 8 7 32 32 H 0.97001 * 119.99832 * 179.97438 * 14 13 11 33 33 H 1.07994 * 120.09483 * 179.97438 * 19 10 9 34 34 H 1.07998 * 119.91049 * 179.97438 * 20 19 10 35 35 H 1.08993 * 109.47009 * 64.64177 * 21 3 2 36 36 H 1.08998 * 109.46751 * 60.00106 * 22 21 3 37 37 H 1.08996 * 109.46681 * 180.02562 * 22 21 3 38 38 H 1.09001 * 109.46850 * 299.99692 * 22 21 3 39 39 H 1.09013 * 109.47124 * 305.58790 * 23 21 3 40 40 H 1.09002 * 109.47183 * 65.58280 * 23 21 3 41 41 H 1.08994 * 109.47348 * 185.58738 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 3.0849 1.3424 -0.0142 5 6 1.5210 2.0998 1.2590 6 8 2.0895 1.4767 2.4126 7 6 1.7665 2.0046 3.6199 8 6 0.9200 3.1089 3.6891 9 6 0.5863 3.6428 4.8995 10 6 1.1091 3.0812 6.0804 11 6 0.7736 3.6312 7.3371 12 1 -0.1370 4.2005 7.4517 13 6 1.6209 3.4388 8.4335 14 7 2.8650 3.0795 8.2440 15 14 0.9764 3.6944 10.1681 16 1 -0.1524 2.7629 10.4191 17 1 2.0638 3.4298 11.1442 18 1 0.5057 5.0947 10.3199 19 6 1.9684 1.9681 6.0015 20 6 2.2881 1.4433 4.7834 21 6 1.4888 2.1121 -1.2393 22 6 2.1283 3.5007 -1.3004 23 6 1.8640 1.3221 -2.4946 24 1 -0.3634 0.5120 -0.8910 25 1 -0.3634 -1.0278 0.0020 26 1 -0.3634 0.5156 0.8889 27 1 1.8305 -0.5262 0.7813 28 1 1.8366 3.1423 1.2164 29 1 0.4337 2.0516 1.3187 30 1 0.5232 3.5409 2.7822 31 1 -0.0734 4.4964 4.9516 32 1 3.4526 2.9465 9.0042 33 1 2.3737 1.5319 6.9024 34 1 2.9472 0.5900 4.7209 35 1 0.4049 2.2134 -1.1841 36 1 3.2122 3.3994 -1.3554 37 1 1.7670 4.0285 -2.1829 38 1 1.8609 4.0635 -0.4060 39 1 2.9380 1.1352 -2.4988 40 1 1.3299 0.3719 -2.4991 41 1 1.5918 1.8962 -3.3802 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403357867.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:21 Heat of formation + Delta-G solvation = -31.915196 kcal Electronic energy + Delta-G solvation = -19771.305962 eV Core-core repulsion = 16843.674387 eV Total energy + Delta-G solvation = -2927.631575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.33688 -37.84058 -36.07114 -33.47313 -33.24926 -30.00359 -29.16340 -28.46695 -26.98193 -25.37973 -24.71336 -22.83118 -20.92569 -20.52293 -19.22540 -17.34881 -17.00626 -16.40898 -15.51609 -15.23303 -14.98783 -14.61862 -13.97725 -13.75025 -13.44934 -13.19851 -12.90891 -12.53753 -12.27487 -12.22454 -12.14193 -11.93528 -11.73050 -11.61109 -11.16966 -11.11495 -11.01473 -10.92883 -10.77733 -10.59340 -10.43387 -9.93179 -9.83446 -9.37479 -9.02109 -8.33196 -7.65919 -7.05452 -6.74300 -4.26957 2.77525 2.93843 3.06661 3.09045 3.21304 3.92057 3.94835 4.35150 4.59972 4.86449 4.92955 5.11855 5.27752 5.35705 5.42335 5.53387 5.60716 5.65111 5.68867 5.69884 5.82569 5.91022 5.96416 5.98790 6.06949 6.08928 6.21350 6.32335 6.34201 6.70661 6.96460 7.03224 7.10228 7.17151 7.44236 7.46166 7.54064 7.78733 7.98524 8.18983 8.43585 8.63509 8.88180 8.97216 10.19837 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.044610 B = 0.003711 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.504857 B = 7544.268236 C = 7688.543671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.681 5.681 3 C 0.094 3.906 4 H 0.089 0.911 5 C 0.030 3.970 6 O -0.329 6.329 7 C -0.009 4.009 8 C -0.166 4.166 9 C -0.200 4.200 10 C 0.089 3.911 11 C -0.464 4.464 12 H 0.076 0.924 13 C 0.075 3.925 14 N -0.797 5.797 15 Si 0.908 3.092 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.135 4.135 20 C -0.120 4.120 21 C -0.087 4.087 22 C -0.153 4.153 23 C -0.132 4.132 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.028 0.972 27 H 0.351 0.649 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.281 0.719 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 -2.556 -13.343 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.311 5.311 3 C -0.016 4.016 4 H 0.107 0.893 5 C -0.048 4.048 6 O -0.245 6.245 7 C -0.052 4.052 8 C -0.185 4.185 9 C -0.220 4.220 10 C 0.086 3.914 11 C -0.494 4.494 12 H 0.094 0.906 13 C -0.142 4.142 14 N -0.423 5.423 15 Si 0.732 3.268 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.155 4.155 20 C -0.139 4.139 21 C -0.106 4.106 22 C -0.210 4.210 23 C -0.190 4.190 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.169 0.831 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.144 0.856 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.507 -2.842 -13.929 14.295 hybrid contribution -0.579 0.774 1.793 2.037 sum -2.086 -2.067 -12.136 12.487 Atomic orbital electron populations 1.22288 0.88740 1.01634 1.00560 1.60650 1.07579 1.13039 1.49795 1.21682 1.00362 0.88070 0.91481 0.89315 1.23318 0.97830 0.97550 0.86074 1.85756 1.69967 1.56278 1.12460 1.18573 1.04278 0.98805 0.83575 1.20392 1.02320 0.98288 0.97455 1.20552 1.07371 1.02041 0.91987 1.17587 0.90960 0.90539 0.92285 1.19442 1.06600 1.30243 0.93116 0.90588 1.25881 0.93978 0.92830 1.01477 1.69826 1.04372 1.34663 1.33477 0.86380 0.79492 0.79847 0.81059 1.18865 1.20354 1.19085 1.20989 1.01969 0.96921 0.95577 1.19831 1.02347 1.00957 0.90717 1.21085 1.00243 0.94776 0.94505 1.21935 1.01129 0.96113 1.01857 1.21656 1.01760 1.00132 0.95418 0.91757 0.91785 0.95308 0.83111 0.92667 0.93079 0.89050 0.88811 0.90835 0.85604 0.88546 0.91271 0.92358 0.92513 0.92345 0.92808 0.91677 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.77 60.06 0.59 0.79 16 2 N -0.68 -8.63 5.96 -114.01 -0.68 -9.31 16 3 C 0.09 1.23 2.37 -67.71 -0.16 1.07 16 4 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 5 C 0.03 0.48 3.82 37.16 0.14 0.62 16 6 O -0.33 -6.60 9.77 -18.71 -0.18 -6.79 16 7 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 8 C -0.17 -3.81 8.96 -39.83 -0.36 -4.16 16 9 C -0.20 -4.97 9.74 -39.25 -0.38 -5.35 16 10 C 0.09 2.38 5.58 -106.80 -0.60 1.79 16 11 C -0.46 -12.39 9.04 -37.83 -0.34 -12.73 16 12 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 13 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 14 N -0.80 -20.68 10.93 55.54 0.61 -20.07 16 15 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 16 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 C -0.14 -3.55 8.65 -39.25 -0.34 -3.89 16 20 C -0.12 -2.91 9.92 -39.83 -0.40 -3.30 16 21 C -0.09 -0.94 1.95 -90.61 -0.18 -1.12 16 22 C -0.15 -1.56 8.95 37.16 0.33 -1.22 16 23 C -0.13 -1.29 8.85 37.16 0.33 -0.96 16 24 H 0.06 0.68 6.15 -51.93 -0.32 0.36 16 25 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 26 H 0.03 0.38 6.21 -51.93 -0.32 0.06 16 27 H 0.35 4.77 8.55 -39.29 -0.34 4.43 16 28 H 0.06 0.89 5.82 -51.93 -0.30 0.59 16 29 H 0.05 0.83 5.68 -51.93 -0.29 0.53 16 30 H 0.09 1.85 6.27 -52.48 -0.33 1.52 16 31 H 0.09 2.19 8.06 -52.48 -0.42 1.76 16 32 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 33 H 0.13 3.37 6.11 -52.49 -0.32 3.05 16 34 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 35 H 0.07 0.75 6.65 -51.93 -0.35 0.40 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.64 6.45 -51.93 -0.33 0.31 16 39 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.06 0.67 7.32 -51.93 -0.38 0.29 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -27.38 323.43 -8.34 -35.72 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.22 Total: 9.05 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -1.71 Total: -27.14 kcal Atomic # 7 Polarization: -29.31 SS G_CDS: -0.07 Total: -29.39 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.18 Total: -6.79 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.38 -8.34 -35.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403357867.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.802 kcal (2) G-P(sol) polarization free energy of solvation -27.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds