Wall clock time and date at job start Mon Mar 30 2020 07:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52994 * 109.46879 * 2 1 4 4 N 1.46901 * 109.47297 * 180.02562 * 3 2 1 5 5 C 1.46895 * 111.00494 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46882 * 324.99927 * 5 4 3 7 7 C 1.53001 * 109.47332 * 84.99567 * 5 4 3 8 8 C 1.53003 * 109.47294 * 205.00002 * 5 4 3 9 9 O 1.42900 * 109.46605 * 294.99639 * 8 5 4 10 10 C 1.35676 * 116.99767 * 180.02562 * 9 8 5 11 11 C 1.39311 * 119.82105 * 180.02562 * 10 9 8 12 12 C 1.36433 * 120.18745 * 180.27884 * 11 10 9 13 13 C 1.40837 * 119.81257 * 359.49339 * 12 11 10 14 14 C 1.41208 * 120.18128 * 180.23043 * 13 12 11 15 15 H 1.07997 * 120.00069 * 204.70988 * 14 13 12 16 16 C 1.39895 * 120.00008 * 24.71720 * 14 13 12 17 17 N 1.30879 * 120.00135 * 17.77697 * 16 14 13 18 18 Si 1.86799 * 119.99868 * 197.78146 * 16 14 13 19 19 H 1.48498 * 109.47385 * 59.99826 * 18 16 14 20 20 H 1.48503 * 109.46925 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47336 * 299.99725 * 18 16 14 22 22 C 1.40840 * 119.63734 * 0.50083 * 13 12 11 23 23 C 1.36432 * 119.81132 * 359.75337 * 22 13 12 24 24 H 1.08998 * 109.46977 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47491 * 299.99928 * 1 2 3 26 26 H 1.09000 * 109.46967 * 60.00695 * 1 2 3 27 27 H 1.09001 * 109.46829 * 240.00084 * 2 1 3 28 28 H 1.08998 * 109.46969 * 119.99855 * 2 1 3 29 29 H 1.08999 * 109.47711 * 59.99727 * 3 2 1 30 30 H 1.08998 * 109.47201 * 299.99712 * 3 2 1 31 31 H 1.00903 * 110.99360 * 303.95668 * 4 3 2 32 32 H 1.09001 * 109.46966 * 179.97438 * 7 5 4 33 33 H 1.08994 * 109.47100 * 300.00275 * 7 5 4 34 34 H 1.08995 * 109.46894 * 60.00061 * 7 5 4 35 35 H 1.08997 * 109.46793 * 174.99696 * 8 5 4 36 36 H 1.08994 * 109.47368 * 54.99752 * 8 5 4 37 37 H 1.08005 * 119.90210 * 359.97438 * 11 10 9 38 38 H 1.08001 * 120.09288 * 179.72575 * 12 11 10 39 39 H 0.97001 * 120.00430 * 180.02562 * 17 16 14 40 40 H 1.07996 * 120.09151 * 179.73098 * 22 13 12 41 41 H 1.07997 * 119.90771 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0355 2.8139 0.0000 6 1 3.3795 3.4552 -0.5888 7 6 4.1014 3.3344 1.4373 8 6 5.4385 2.8219 -0.6102 9 8 6.3257 2.0761 0.2257 10 6 7.6187 1.9848 -0.1751 11 6 8.5340 1.2713 0.5954 12 6 9.8373 1.1794 0.2024 13 6 10.2540 1.7996 -0.9915 14 6 11.5999 1.7054 -1.4081 15 1 12.0188 2.4611 -2.0560 16 6 12.3907 0.6331 -0.9816 17 7 11.8266 -0.4458 -0.5013 18 14 14.2520 0.7412 -1.0976 19 1 14.7329 1.8872 -0.2848 20 1 14.8537 -0.5159 -0.5847 21 1 14.6491 0.9384 -2.5148 22 6 9.3222 2.5190 -1.7646 23 6 8.0238 2.6056 -1.3547 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.8709 0.9163 0.7805 32 1 4.4925 4.3518 1.4377 33 1 3.1019 3.3287 1.8719 34 1 4.7573 2.6932 2.0261 35 1 5.7934 3.8493 -0.6915 36 1 5.4064 2.3692 -1.6012 37 1 8.2121 0.7935 1.5090 38 1 10.5466 0.6295 0.8032 39 1 12.3749 -1.1891 -0.2053 40 1 9.6347 3.0011 -2.6791 41 1 7.3080 3.1572 -1.9461 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403367840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:50 Heat of formation + Delta-G solvation = -38.003460 kcal Electronic energy + Delta-G solvation = -19223.312469 eV Core-core repulsion = 16295.416888 eV Total energy + Delta-G solvation = -2927.895582 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.93561 -37.44822 -36.07887 -33.89936 -33.12104 -30.11730 -29.51512 -28.87182 -26.59437 -25.00511 -24.58023 -21.60159 -21.44778 -20.63852 -19.82166 -17.29914 -16.95353 -15.87223 -15.48345 -15.29646 -14.99860 -14.54825 -13.99480 -13.85203 -13.50089 -13.32262 -12.82355 -12.69554 -12.35792 -12.15963 -12.10997 -11.98017 -11.66562 -11.34173 -11.25861 -11.17295 -11.05712 -10.91435 -10.82565 -10.55375 -10.48509 -9.86645 -9.74904 -9.27573 -8.95829 -8.35347 -7.57434 -6.94924 -6.66636 -4.19559 2.84660 3.01835 3.10666 3.13405 3.27335 3.98960 4.10268 4.24497 4.67770 4.80725 4.90952 4.96545 5.16999 5.24739 5.33918 5.40838 5.52531 5.61708 5.71085 5.78362 5.79942 5.83094 5.91308 6.02659 6.06205 6.15193 6.17632 6.26991 6.30796 6.79015 7.03719 7.07460 7.18189 7.25093 7.44882 7.54063 7.62237 7.87375 8.06160 8.26810 8.53439 8.72588 8.95662 9.05766 10.27710 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039080 B = 0.003318 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.313762 B = 8436.680631 C = 8729.574498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.058 3.942 4 N -0.681 5.681 5 C 0.089 3.911 6 H 0.085 0.915 7 C -0.178 4.178 8 C 0.079 3.921 9 O -0.323 6.323 10 C -0.001 4.001 11 C -0.122 4.122 12 C -0.133 4.133 13 C 0.087 3.913 14 C -0.465 4.465 15 H 0.075 0.925 16 C 0.075 3.925 17 N -0.800 5.800 18 Si 0.907 3.093 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.198 4.198 23 C -0.168 4.168 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.349 0.651 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.280 0.720 40 H 0.093 0.907 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.121 2.968 2.390 15.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.072 4.072 4 N -0.313 5.313 5 C -0.021 4.021 6 H 0.103 0.897 7 C -0.237 4.237 8 C 0.002 3.998 9 O -0.239 6.239 10 C -0.044 4.044 11 C -0.141 4.141 12 C -0.153 4.153 13 C 0.084 3.916 14 C -0.496 4.496 15 H 0.093 0.907 16 C -0.141 4.141 17 N -0.427 5.427 18 Si 0.732 3.268 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.218 4.218 23 C -0.187 4.187 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.142 0.858 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.093 2.570 1.953 15.434 hybrid contribution 0.682 0.366 0.556 0.953 sum -14.410 2.936 2.508 14.919 Atomic orbital electron populations 1.21727 0.95780 1.01662 1.01606 1.21512 0.95299 0.96604 1.02827 1.22028 0.88240 0.96849 1.00058 1.60547 1.06440 1.13299 1.51007 1.21620 0.94652 0.89818 0.95976 0.89669 1.22394 1.01209 1.02406 0.97697 1.22482 0.87974 0.95017 0.94339 1.85780 1.17826 1.71350 1.48906 1.18581 0.82679 1.05671 0.97487 1.19811 0.93072 1.01794 0.99434 1.20961 0.93905 1.03215 0.97206 1.17575 0.92859 0.90664 0.90460 1.19413 0.95320 1.07517 1.27306 0.90690 1.25861 1.00991 0.94242 0.93051 1.69830 1.37821 1.03280 1.31731 0.86398 0.82473 0.78396 0.79581 1.18950 1.20435 1.19143 1.20566 0.92635 1.08155 1.00395 1.20413 0.97026 1.04209 0.97073 0.92617 0.92993 0.92737 0.90994 0.92107 0.95607 0.91365 0.83170 0.92122 0.93384 0.91116 0.93260 0.92489 0.88665 0.85803 0.90951 0.88869 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.17 6.19 -26.73 -0.17 -1.34 16 3 C 0.06 0.59 5.48 -3.83 -0.02 0.57 16 4 N -0.68 -8.75 6.20 -106.73 -0.66 -9.41 16 5 C 0.09 1.14 2.99 -67.71 -0.20 0.94 16 6 H 0.09 0.95 7.80 -51.93 -0.40 0.54 16 7 C -0.18 -2.14 8.96 37.16 0.33 -1.81 16 8 C 0.08 1.27 4.57 37.16 0.17 1.44 16 9 O -0.32 -6.47 9.19 -18.73 -0.17 -6.64 16 10 C 0.00 -0.02 6.71 -38.78 -0.26 -0.28 16 11 C -0.12 -2.99 9.92 -39.83 -0.40 -3.39 16 12 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 13 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 14 C -0.47 -12.57 9.04 -37.83 -0.34 -12.91 16 15 H 0.07 1.94 7.91 -52.49 -0.41 1.53 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 17 N -0.80 -21.07 10.96 55.55 0.61 -20.46 16 18 Si 0.91 18.98 29.59 -169.99 -5.03 13.95 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 C -0.20 -4.97 9.74 -39.25 -0.38 -5.35 16 23 C -0.17 -3.89 8.96 -39.83 -0.36 -4.25 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.25 7.44 -51.93 -0.39 -0.14 16 30 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 31 H 0.35 4.68 8.47 -39.29 -0.33 4.34 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.50 7.45 -51.93 -0.39 0.11 16 34 H 0.07 0.97 7.55 -51.93 -0.39 0.58 16 35 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16 36 H 0.06 0.97 7.65 -51.93 -0.40 0.57 16 37 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 38 H 0.12 3.36 6.17 -52.49 -0.32 3.03 16 39 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 40 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.09 1.89 6.27 -52.49 -0.33 1.56 16 LS Contribution 334.76 15.07 5.04 5.04 Total: -1.00 -27.98 334.76 -9.19 -37.16 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.70 Total: 7.81 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: -2.28 Total: -27.45 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: -0.05 Total: -29.87 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.17 Total: -6.64 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.98 -9.19 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403367840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.839 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds