Wall clock time and date at job start Mon Mar 30 2020 07:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52994 * 109.46879 * 2 1 4 4 N 1.46901 * 109.47297 * 180.02562 * 3 2 1 5 5 C 1.46895 * 111.00494 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46882 * 324.99927 * 5 4 3 7 7 C 1.53001 * 109.47332 * 84.99567 * 5 4 3 8 8 C 1.53003 * 109.47294 * 205.00002 * 5 4 3 9 9 O 1.42900 * 109.46605 * 294.99639 * 8 5 4 10 10 C 1.35676 * 116.99767 * 180.02562 * 9 8 5 11 11 C 1.39311 * 119.82105 * 180.02562 * 10 9 8 12 12 C 1.36433 * 120.18745 * 180.27884 * 11 10 9 13 13 C 1.40837 * 119.81257 * 359.49339 * 12 11 10 14 14 C 1.41208 * 120.18128 * 180.23043 * 13 12 11 15 15 H 1.07997 * 120.00069 * 204.70988 * 14 13 12 16 16 C 1.39895 * 120.00008 * 24.71720 * 14 13 12 17 17 N 1.30879 * 120.00135 * 17.77697 * 16 14 13 18 18 Si 1.86799 * 119.99868 * 197.78146 * 16 14 13 19 19 H 1.48498 * 109.47385 * 59.99826 * 18 16 14 20 20 H 1.48503 * 109.46925 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47336 * 299.99725 * 18 16 14 22 22 C 1.40840 * 119.63734 * 0.50083 * 13 12 11 23 23 C 1.36432 * 119.81132 * 359.75337 * 22 13 12 24 24 H 1.08998 * 109.46977 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47491 * 299.99928 * 1 2 3 26 26 H 1.09000 * 109.46967 * 60.00695 * 1 2 3 27 27 H 1.09001 * 109.46829 * 240.00084 * 2 1 3 28 28 H 1.08998 * 109.46969 * 119.99855 * 2 1 3 29 29 H 1.08999 * 109.47711 * 59.99727 * 3 2 1 30 30 H 1.08998 * 109.47201 * 299.99712 * 3 2 1 31 31 H 1.00903 * 110.99360 * 303.95668 * 4 3 2 32 32 H 1.09001 * 109.46966 * 179.97438 * 7 5 4 33 33 H 1.08994 * 109.47100 * 300.00275 * 7 5 4 34 34 H 1.08995 * 109.46894 * 60.00061 * 7 5 4 35 35 H 1.08997 * 109.46793 * 174.99696 * 8 5 4 36 36 H 1.08994 * 109.47368 * 54.99752 * 8 5 4 37 37 H 1.08005 * 119.90210 * 359.97438 * 11 10 9 38 38 H 1.08001 * 120.09288 * 179.72575 * 12 11 10 39 39 H 0.97001 * 120.00430 * 180.02562 * 17 16 14 40 40 H 1.07996 * 120.09151 * 179.73098 * 22 13 12 41 41 H 1.07997 * 119.90771 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0355 2.8139 0.0000 6 1 3.3795 3.4552 -0.5888 7 6 4.1014 3.3344 1.4373 8 6 5.4385 2.8219 -0.6102 9 8 6.3257 2.0761 0.2257 10 6 7.6187 1.9848 -0.1751 11 6 8.5340 1.2713 0.5954 12 6 9.8373 1.1794 0.2024 13 6 10.2540 1.7996 -0.9915 14 6 11.5999 1.7054 -1.4081 15 1 12.0188 2.4611 -2.0560 16 6 12.3907 0.6331 -0.9816 17 7 11.8266 -0.4458 -0.5013 18 14 14.2520 0.7412 -1.0976 19 1 14.7329 1.8872 -0.2848 20 1 14.8537 -0.5159 -0.5847 21 1 14.6491 0.9384 -2.5148 22 6 9.3222 2.5190 -1.7646 23 6 8.0238 2.6056 -1.3547 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.8709 0.9163 0.7805 32 1 4.4925 4.3518 1.4377 33 1 3.1019 3.3287 1.8719 34 1 4.7573 2.6932 2.0261 35 1 5.7934 3.8493 -0.6915 36 1 5.4064 2.3692 -1.6012 37 1 8.2121 0.7935 1.5090 38 1 10.5466 0.6295 0.8032 39 1 12.3749 -1.1891 -0.2053 40 1 9.6347 3.0011 -2.6791 41 1 7.3080 3.1572 -1.9461 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403367840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:50 Heat of formation + Delta-G solvation = -53.353218 kcal Electronic energy + Delta-G solvation = -19223.978085 eV Core-core repulsion = 16295.416888 eV Total energy + Delta-G solvation = -2928.561197 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56318 -38.78950 -37.57237 -35.27062 -34.55181 -31.73261 -30.98933 -30.55027 -27.85685 -26.54305 -25.74412 -23.17246 -22.57985 -22.23377 -21.17747 -19.21746 -18.61104 -17.09051 -16.82990 -16.63678 -16.29659 -15.84012 -15.71900 -15.20757 -14.81325 -14.49375 -14.10530 -14.03664 -13.91031 -13.64928 -13.48365 -13.00210 -12.91206 -12.88091 -12.77865 -12.47487 -12.36197 -12.13648 -12.05739 -11.73422 -11.65759 -11.60487 -11.42857 -11.13064 -10.83668 -9.52834 -9.30912 -8.87295 -8.56943 -6.20120 0.99005 1.05867 1.40099 1.51278 1.55998 2.24044 2.71122 2.77150 3.17323 3.73238 3.89066 4.07301 4.10114 4.25985 4.32827 4.35391 4.39912 4.47297 4.55589 4.65749 4.70114 4.78346 4.88792 4.91377 4.95807 4.96952 5.09960 5.20775 5.23846 5.30158 5.32058 5.32614 5.42505 5.61851 5.68367 5.93226 6.08090 6.15175 6.29959 6.44634 6.59944 6.85453 6.97407 7.15004 8.39306 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039080 B = 0.003318 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.313762 B = 8436.680631 C = 8729.574498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.060 3.940 4 N -0.697 5.697 5 C 0.095 3.905 6 H 0.110 0.890 7 C -0.172 4.172 8 C 0.070 3.930 9 O -0.324 6.324 10 C 0.009 3.991 11 C -0.134 4.134 12 C -0.152 4.152 13 C 0.053 3.947 14 C -0.502 4.502 15 H 0.075 0.925 16 C 0.033 3.967 17 N -0.833 5.833 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.269 1.269 21 H -0.260 1.260 22 C -0.209 4.209 23 C -0.169 4.169 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.343 0.657 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.287 0.713 40 H 0.103 0.897 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.355 3.752 2.282 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.068 4.068 4 N -0.329 5.329 5 C -0.015 4.015 6 H 0.128 0.872 7 C -0.231 4.231 8 C -0.006 4.006 9 O -0.240 6.240 10 C -0.035 4.035 11 C -0.153 4.153 12 C -0.171 4.171 13 C 0.051 3.949 14 C -0.532 4.532 15 H 0.093 0.907 16 C -0.181 4.181 17 N -0.460 5.460 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.184 1.184 22 C -0.229 4.229 23 C -0.187 4.187 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.162 0.838 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.364 3.362 1.840 16.807 hybrid contribution 0.864 0.143 0.585 1.053 sum -15.500 3.505 2.425 16.075 Atomic orbital electron populations 1.21695 0.94258 1.02218 1.02198 1.21496 0.96593 0.96052 1.01989 1.22067 0.86577 0.97415 1.00777 1.60546 1.08144 1.13259 1.50911 1.21615 0.92824 0.90413 0.96607 0.87216 1.22326 1.01913 1.02002 0.96862 1.22839 0.89023 0.94840 0.93913 1.85802 1.16589 1.71868 1.49735 1.18665 0.83947 1.04067 0.96827 1.19986 0.92830 1.02220 1.00272 1.20896 0.94649 1.04158 0.97443 1.17932 0.93817 0.91913 0.91245 1.19675 0.96128 1.08537 1.28862 0.90716 1.26733 1.05882 0.93298 0.92143 1.69889 1.39821 1.03972 1.32289 0.85256 0.75939 0.78705 0.79797 1.18556 1.19301 1.18436 1.20799 0.93318 1.08068 1.00689 1.20696 0.96852 1.03937 0.97232 0.92153 0.92271 0.92238 0.92338 0.92488 0.94524 0.90771 0.83849 0.91694 0.91447 0.93231 0.92211 0.93192 0.87339 0.87298 0.90258 0.87913 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.99 0.71 -1.22 16 2 C -0.12 -2.14 6.19 30.60 0.19 -1.95 16 3 C 0.06 1.09 5.48 86.30 0.47 1.57 16 4 N -0.70 -16.66 6.20 -491.58 -3.05 -19.71 16 5 C 0.10 2.20 2.99 44.92 0.13 2.34 16 6 H 0.11 2.05 7.80 -2.38 -0.02 2.03 16 7 C -0.17 -3.73 8.96 71.98 0.65 -3.09 16 8 C 0.07 2.12 4.57 71.98 0.33 2.45 16 9 O -0.32 -12.62 9.19 -89.94 -0.83 -13.45 16 10 C 0.01 0.42 6.71 22.79 0.15 0.57 16 11 C -0.13 -6.66 9.92 22.11 0.22 -6.44 16 12 C -0.15 -8.31 8.64 22.48 0.19 -8.12 16 13 C 0.05 2.96 5.57 -21.28 -0.12 2.84 16 14 C -0.50 -27.82 9.04 23.40 0.21 -27.61 16 15 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 16 C 0.03 1.71 5.14 85.24 0.44 2.15 16 17 N -0.83 -44.86 10.96 21.82 0.24 -44.62 16 18 Si 0.98 39.12 29.59 68.60 2.03 41.15 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 22 C -0.21 -10.58 9.74 22.48 0.22 -10.36 16 23 C -0.17 -7.65 8.96 22.11 0.20 -7.46 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.04 0.60 7.44 -2.39 -0.02 0.58 16 30 H 0.07 1.27 8.06 -2.39 -0.02 1.25 16 31 H 0.34 8.81 8.47 -89.69 -0.76 8.05 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.20 7.45 -2.39 -0.02 1.18 16 34 H 0.05 1.29 7.55 -2.39 -0.02 1.27 16 35 H 0.06 1.70 7.64 -2.39 -0.02 1.68 16 36 H 0.05 1.60 7.65 -2.39 -0.02 1.58 16 37 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 38 H 0.11 6.17 6.17 -2.91 -0.02 6.15 16 39 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 40 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 41 H 0.12 4.77 6.27 -2.91 -0.02 4.75 16 Total: -1.00 -60.69 334.76 2.64 -58.05 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.24 Total: 32.89 kcal Atomic # 6 Polarization: -58.33 SS G_CDS: 4.00 Total: -54.33 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -2.81 Total: -64.32 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.83 Total: -13.45 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -60.69 2.64 -58.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403367840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.701 kcal (2) G-P(sol) polarization free energy of solvation -60.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds