Wall clock time and date at job start Mon Mar 30 2020 06:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.47095 * 2 1 4 4 C 1.46897 * 111.00118 * 176.83104 * 3 2 1 5 5 H 1.09006 * 109.47026 * 324.28449 * 4 3 2 6 6 C 1.53002 * 109.47358 * 84.28499 * 4 3 2 7 7 C 1.52999 * 109.47335 * 179.74755 * 6 4 3 8 8 C 1.52998 * 109.47597 * 204.28674 * 4 3 2 9 9 O 1.42908 * 109.46850 * 294.99932 * 8 4 3 10 10 C 1.35672 * 116.99818 * 179.97438 * 9 8 4 11 11 C 1.39313 * 119.81931 * 359.72324 * 10 9 8 12 12 C 1.36444 * 120.18492 * 179.75918 * 11 10 9 13 13 C 1.40834 * 119.80945 * 0.51443 * 12 11 10 14 14 C 1.41218 * 120.17808 * 179.71893 * 13 12 11 15 15 H 1.07995 * 119.99670 * 156.84041 * 14 13 12 16 16 C 1.39887 * 119.99974 * 336.83309 * 14 13 12 17 17 N 1.30884 * 120.00392 * 332.42521 * 16 14 13 18 18 Si 1.86800 * 119.99853 * 152.41758 * 16 14 13 19 19 H 1.48501 * 109.46948 * 94.98228 * 18 16 14 20 20 H 1.48498 * 109.47118 * 214.98467 * 18 16 14 21 21 H 1.48507 * 109.47145 * 334.98489 * 18 16 14 22 22 C 1.40830 * 119.64249 * 359.74540 * 13 12 11 23 23 C 1.36438 * 119.81576 * 359.97438 * 22 13 12 24 24 H 1.09005 * 109.47389 * 59.99450 * 1 2 3 25 25 H 1.08997 * 109.47028 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47100 * 299.99760 * 1 2 3 27 27 H 1.09000 * 109.46839 * 240.00972 * 2 1 3 28 28 H 1.08991 * 109.47414 * 120.00344 * 2 1 3 29 29 H 1.00906 * 110.99741 * 52.87939 * 3 2 1 30 30 H 1.09000 * 109.47218 * 59.74268 * 6 4 3 31 31 H 1.09001 * 109.46669 * 299.74713 * 6 4 3 32 32 H 1.08994 * 109.47171 * 176.32870 * 7 6 4 33 33 H 1.08996 * 109.47357 * 56.32814 * 7 6 4 34 34 H 1.09003 * 109.47006 * 296.32840 * 7 6 4 35 35 H 1.09004 * 109.47143 * 54.99589 * 8 4 3 36 36 H 1.08997 * 109.47711 * 174.99773 * 8 4 3 37 37 H 1.07999 * 119.91000 * 0.02885 * 11 10 9 38 38 H 1.08001 * 120.09732 * 180.25533 * 12 11 10 39 39 H 0.96999 * 119.99833 * 179.97438 * 17 16 14 40 40 H 1.08003 * 120.09484 * 179.97438 * 22 13 12 41 41 H 1.07995 * 119.91642 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4861 1.4249 0.0758 5 1 3.8394 0.6119 0.7101 6 6 4.0739 1.2688 -1.3282 7 6 5.6011 1.3167 -1.2500 8 6 3.9300 2.7638 0.6685 9 8 3.5685 3.8219 -0.2215 10 6 3.8924 5.0835 0.1580 11 6 4.5427 5.2966 1.3714 12 6 4.8762 6.5619 1.7581 13 6 4.5515 7.6550 0.9317 14 6 4.8878 8.9684 1.3271 15 1 4.9926 9.7456 0.5846 16 6 5.0848 9.2626 2.6804 17 7 4.4731 8.5589 3.5989 18 14 6.2212 10.6596 3.1766 19 1 5.4241 11.8944 3.3889 20 1 6.9249 10.3022 4.4345 21 1 7.2181 10.8927 2.1008 22 6 3.8893 7.4314 -0.2909 23 6 3.5679 6.1594 -0.6656 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6042 1.9154 0.7512 30 1 3.7170 2.0792 -1.9637 31 1 3.7614 0.3129 -1.7485 32 1 6.0213 1.1404 -2.2401 33 1 5.9541 0.5473 -0.5632 34 1 5.9160 2.2965 -0.8908 35 1 3.4408 2.9153 1.6307 36 1 5.0111 2.7592 0.8073 37 1 4.7874 4.4575 2.0059 38 1 5.3840 6.7250 2.6973 39 1 4.6101 8.7628 4.5373 40 1 3.6364 8.2644 -0.9301 41 1 3.0597 5.9861 -1.6026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403431391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:56 Heat of formation + Delta-G solvation = -34.893978 kcal Electronic energy + Delta-G solvation = -19604.585905 eV Core-core repulsion = 16676.825161 eV Total energy + Delta-G solvation = -2927.760745 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.05597 -37.45424 -35.92105 -33.64375 -33.13756 -30.13639 -29.60754 -29.11774 -27.03665 -24.68431 -23.96577 -22.23080 -21.15171 -20.81555 -19.41437 -17.32960 -16.96995 -15.83485 -15.76033 -15.15043 -14.98367 -14.49568 -13.95192 -13.89447 -13.71689 -13.13734 -12.92606 -12.58550 -12.30860 -12.00653 -11.93042 -11.91630 -11.60893 -11.48671 -11.33662 -11.09550 -11.04607 -10.93744 -10.70042 -10.54649 -10.27515 -9.86788 -9.77751 -9.31940 -8.90994 -8.36165 -7.61742 -7.03658 -6.76657 -4.19028 2.79821 2.98979 3.08687 3.12566 3.25756 3.95508 4.03381 4.26136 4.58430 4.89779 5.01452 5.06632 5.20276 5.37491 5.42030 5.55585 5.61744 5.61771 5.69285 5.71704 5.77895 5.90096 6.04733 6.06974 6.12609 6.14579 6.32163 6.39954 6.54577 6.75775 6.93861 7.07935 7.10458 7.27568 7.42266 7.45521 7.59563 7.92762 8.02310 8.18608 8.49326 8.69284 8.91185 9.03716 10.16893 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031619 B = 0.003856 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.327548 B = 7259.689275 C = 7476.024298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 N -0.679 5.679 4 C 0.092 3.908 5 H 0.051 0.949 6 C -0.106 4.106 7 C -0.154 4.154 8 C 0.067 3.933 9 O -0.310 6.310 10 C -0.012 4.012 11 C -0.171 4.171 12 C -0.144 4.144 13 C 0.091 3.909 14 C -0.471 4.471 15 H 0.078 0.922 16 C 0.083 3.917 17 N -0.787 5.787 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.259 1.259 22 C -0.199 4.199 23 C -0.108 4.108 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.344 0.656 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.280 0.720 40 H 0.099 0.901 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.421 -13.408 -2.935 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 N -0.312 5.312 4 C -0.017 4.017 5 H 0.069 0.931 6 C -0.144 4.144 7 C -0.211 4.211 8 C -0.010 4.010 9 O -0.225 6.225 10 C -0.055 4.055 11 C -0.190 4.190 12 C -0.163 4.163 13 C 0.089 3.911 14 C -0.500 4.500 15 H 0.096 0.904 16 C -0.135 4.135 17 N -0.412 5.412 18 Si 0.721 3.279 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.183 1.183 22 C -0.219 4.219 23 C -0.127 4.127 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.163 0.837 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.587 -13.426 -3.528 13.972 hybrid contribution 0.721 0.355 1.693 1.874 sum -0.867 -13.071 -1.836 13.228 Atomic orbital electron populations 1.21775 0.95091 1.01404 1.02612 1.21977 0.95586 0.89982 1.00045 1.60418 1.05858 1.11989 1.52923 1.21668 0.87913 0.94800 0.97330 0.93087 1.21387 0.94588 1.02033 0.96426 1.21817 0.95990 1.02009 1.01322 1.22608 0.99238 0.86507 0.92605 1.85904 1.78608 1.12704 1.45331 1.18557 1.07580 0.82975 0.96376 1.20554 1.04744 0.97549 0.96136 1.20722 1.03736 0.90896 1.00967 1.17533 0.89346 0.93312 0.90893 1.19411 1.42856 0.95480 0.92248 0.90365 1.25861 0.93980 0.97175 0.96521 1.69920 1.31712 1.37407 1.02138 0.86491 0.81346 0.81243 0.78804 1.19622 1.20089 1.18323 1.20558 1.06584 0.94458 1.00284 1.19610 1.03486 0.91135 0.98467 0.91686 0.92461 0.92821 0.91212 0.95809 0.83662 0.90049 0.92854 0.92796 0.93461 0.91988 0.93605 0.92456 0.89069 0.87265 0.90944 0.88331 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.14 37.16 0.38 -1.03 16 2 C 0.05 0.56 6.23 -3.82 -0.02 0.54 16 3 N -0.68 -8.90 6.28 -106.73 -0.67 -9.57 16 4 C 0.09 1.23 2.55 -67.71 -0.17 1.05 16 5 H 0.05 0.60 7.76 -51.93 -0.40 0.20 16 6 C -0.11 -1.39 5.47 -26.73 -0.15 -1.54 16 7 C -0.15 -1.86 9.45 37.16 0.35 -1.51 16 8 C 0.07 1.08 3.78 37.16 0.14 1.22 16 9 O -0.31 -6.21 9.19 -18.72 -0.17 -6.39 16 10 C -0.01 -0.27 6.71 -38.78 -0.26 -0.53 16 11 C -0.17 -4.02 8.96 -39.83 -0.36 -4.38 16 12 C -0.14 -3.75 8.70 -39.25 -0.34 -4.09 16 13 C 0.09 2.46 5.56 -106.80 -0.59 1.87 16 14 C -0.47 -12.60 8.98 -37.83 -0.34 -12.94 16 15 H 0.08 2.02 7.98 -52.49 -0.42 1.60 16 16 C 0.08 2.11 4.90 -17.34 -0.08 2.02 16 17 N -0.79 -20.46 11.51 55.54 0.64 -19.82 16 18 Si 0.90 18.63 29.64 -169.99 -5.04 13.59 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.20 -4.97 9.74 -39.25 -0.38 -5.36 16 23 C -0.11 -2.55 9.92 -39.83 -0.40 -2.94 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.72 7.47 -51.93 -0.39 0.33 16 28 H 0.02 0.24 7.98 -51.93 -0.41 -0.18 16 29 H 0.34 4.61 8.25 -39.29 -0.32 4.28 16 30 H 0.08 1.26 7.57 -51.93 -0.39 0.87 16 31 H 0.05 0.63 7.47 -51.93 -0.39 0.24 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.86 6.74 -51.93 -0.35 0.51 16 35 H 0.05 0.74 7.52 -51.93 -0.39 0.35 16 36 H 0.06 0.91 6.31 -51.93 -0.33 0.58 16 37 H 0.09 1.92 6.27 -52.49 -0.33 1.59 16 38 H 0.11 2.91 6.43 -52.49 -0.34 2.58 16 39 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 40 H 0.10 2.30 8.06 -52.48 -0.42 1.87 16 41 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 331.90 15.07 5.00 5.00 Total: -1.00 -27.78 331.90 -9.03 -36.81 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.56 Total: 7.99 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -2.23 Total: -27.62 kcal Atomic # 7 Polarization: -29.36 SS G_CDS: -0.03 Total: -29.39 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.17 Total: -6.39 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.04 Total: 13.59 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.78 -9.03 -36.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403431391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.912 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds