Wall clock time and date at job start Mon Mar 30 2020 06:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.47095 * 2 1 4 4 C 1.46897 * 111.00118 * 176.83104 * 3 2 1 5 5 H 1.09006 * 109.47026 * 324.28449 * 4 3 2 6 6 C 1.53002 * 109.47358 * 84.28499 * 4 3 2 7 7 C 1.52999 * 109.47335 * 179.74755 * 6 4 3 8 8 C 1.52998 * 109.47597 * 204.28674 * 4 3 2 9 9 O 1.42908 * 109.46850 * 294.99932 * 8 4 3 10 10 C 1.35672 * 116.99818 * 179.97438 * 9 8 4 11 11 C 1.39313 * 119.81931 * 359.72324 * 10 9 8 12 12 C 1.36444 * 120.18492 * 179.75918 * 11 10 9 13 13 C 1.40834 * 119.80945 * 0.51443 * 12 11 10 14 14 C 1.41218 * 120.17808 * 179.71893 * 13 12 11 15 15 H 1.07995 * 119.99670 * 156.84041 * 14 13 12 16 16 C 1.39887 * 119.99974 * 336.83309 * 14 13 12 17 17 N 1.30884 * 120.00392 * 332.42521 * 16 14 13 18 18 Si 1.86800 * 119.99853 * 152.41758 * 16 14 13 19 19 H 1.48501 * 109.46948 * 94.98228 * 18 16 14 20 20 H 1.48498 * 109.47118 * 214.98467 * 18 16 14 21 21 H 1.48507 * 109.47145 * 334.98489 * 18 16 14 22 22 C 1.40830 * 119.64249 * 359.74540 * 13 12 11 23 23 C 1.36438 * 119.81576 * 359.97438 * 22 13 12 24 24 H 1.09005 * 109.47389 * 59.99450 * 1 2 3 25 25 H 1.08997 * 109.47028 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47100 * 299.99760 * 1 2 3 27 27 H 1.09000 * 109.46839 * 240.00972 * 2 1 3 28 28 H 1.08991 * 109.47414 * 120.00344 * 2 1 3 29 29 H 1.00906 * 110.99741 * 52.87939 * 3 2 1 30 30 H 1.09000 * 109.47218 * 59.74268 * 6 4 3 31 31 H 1.09001 * 109.46669 * 299.74713 * 6 4 3 32 32 H 1.08994 * 109.47171 * 176.32870 * 7 6 4 33 33 H 1.08996 * 109.47357 * 56.32814 * 7 6 4 34 34 H 1.09003 * 109.47006 * 296.32840 * 7 6 4 35 35 H 1.09004 * 109.47143 * 54.99589 * 8 4 3 36 36 H 1.08997 * 109.47711 * 174.99773 * 8 4 3 37 37 H 1.07999 * 119.91000 * 0.02885 * 11 10 9 38 38 H 1.08001 * 120.09732 * 180.25533 * 12 11 10 39 39 H 0.96999 * 119.99833 * 179.97438 * 17 16 14 40 40 H 1.08003 * 120.09484 * 179.97438 * 22 13 12 41 41 H 1.07995 * 119.91642 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4861 1.4249 0.0758 5 1 3.8394 0.6119 0.7101 6 6 4.0739 1.2688 -1.3282 7 6 5.6011 1.3167 -1.2500 8 6 3.9300 2.7638 0.6685 9 8 3.5685 3.8219 -0.2215 10 6 3.8924 5.0835 0.1580 11 6 4.5427 5.2966 1.3714 12 6 4.8762 6.5619 1.7581 13 6 4.5515 7.6550 0.9317 14 6 4.8878 8.9684 1.3271 15 1 4.9926 9.7456 0.5846 16 6 5.0848 9.2626 2.6804 17 7 4.4731 8.5589 3.5989 18 14 6.2212 10.6596 3.1766 19 1 5.4241 11.8944 3.3889 20 1 6.9249 10.3022 4.4345 21 1 7.2181 10.8927 2.1008 22 6 3.8893 7.4314 -0.2909 23 6 3.5679 6.1594 -0.6656 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6042 1.9154 0.7512 30 1 3.7170 2.0792 -1.9637 31 1 3.7614 0.3129 -1.7485 32 1 6.0213 1.1404 -2.2401 33 1 5.9541 0.5473 -0.5632 34 1 5.9160 2.2965 -0.8908 35 1 3.4408 2.9153 1.6307 36 1 5.0111 2.7592 0.8073 37 1 4.7874 4.4575 2.0059 38 1 5.3840 6.7250 2.6973 39 1 4.6101 8.7628 4.5373 40 1 3.6364 8.2644 -0.9301 41 1 3.0597 5.9861 -1.6026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403431391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:56 Heat of formation + Delta-G solvation = -50.199433 kcal Electronic energy + Delta-G solvation = -19605.249600 eV Core-core repulsion = 16676.825161 eV Total energy + Delta-G solvation = -2928.424439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64358 -38.88961 -37.43670 -35.25475 -34.39252 -31.55019 -31.28658 -30.74498 -28.29745 -26.52727 -25.07220 -23.24099 -22.84592 -22.50084 -20.71755 -19.25834 -18.62513 -17.19260 -16.97743 -16.69220 -16.13987 -15.83632 -15.71783 -15.23548 -14.76631 -14.69581 -14.35330 -14.09802 -13.86390 -13.52827 -13.37507 -13.14445 -12.81406 -12.76322 -12.73134 -12.59256 -12.31700 -12.16562 -12.00821 -11.84995 -11.69300 -11.48220 -11.36858 -11.13821 -10.78388 -9.54993 -9.32455 -8.94449 -8.64705 -6.17475 0.96973 1.05176 1.39022 1.48418 1.57205 2.22258 2.65179 2.68695 3.19070 3.70624 3.79693 3.93927 4.25320 4.25448 4.33253 4.37977 4.40624 4.47722 4.51521 4.56766 4.61662 4.68917 4.87939 4.95817 5.00829 5.03868 5.13422 5.16327 5.18280 5.32634 5.34875 5.38499 5.49333 5.53754 5.68370 5.98602 6.05833 6.15063 6.26529 6.42488 6.57180 6.83594 6.94867 7.14787 8.31234 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031619 B = 0.003856 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.327548 B = 7259.689275 C = 7476.024298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 N -0.695 5.695 4 C 0.099 3.901 5 H 0.075 0.925 6 C -0.103 4.103 7 C -0.150 4.150 8 C 0.060 3.940 9 O -0.313 6.313 10 C 0.000 4.000 11 C -0.173 4.173 12 C -0.164 4.164 13 C 0.060 3.940 14 C -0.509 4.509 15 H 0.076 0.924 16 C 0.044 3.956 17 N -0.819 5.819 18 Si 0.973 3.027 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.260 1.260 22 C -0.209 4.209 23 C -0.117 4.117 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.340 0.660 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.289 0.711 40 H 0.107 0.893 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 -14.849 -2.776 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 N -0.328 5.328 4 C -0.011 4.011 5 H 0.093 0.907 6 C -0.141 4.141 7 C -0.208 4.208 8 C -0.016 4.016 9 O -0.228 6.228 10 C -0.045 4.045 11 C -0.191 4.191 12 C -0.183 4.183 13 C 0.058 3.942 14 C -0.538 4.538 15 H 0.094 0.906 16 C -0.172 4.172 17 N -0.445 5.445 18 Si 0.794 3.206 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.183 1.183 22 C -0.229 4.229 23 C -0.136 4.136 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.159 0.841 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.315 -14.892 -3.379 15.327 hybrid contribution 0.552 0.629 1.585 1.793 sum -0.764 -14.263 -1.794 14.396 Atomic orbital electron populations 1.21754 0.94383 1.02447 1.01973 1.22040 0.96186 0.88569 1.00704 1.60456 1.05686 1.13681 1.52991 1.21662 0.88307 0.93449 0.97650 0.90720 1.21348 0.95139 1.01786 0.95823 1.21785 0.95326 1.01334 1.02354 1.22915 0.99709 0.86572 0.92381 1.85920 1.78339 1.12159 1.46410 1.18663 1.05864 0.84297 0.95628 1.20749 1.04291 0.97391 0.96716 1.20703 1.04957 0.91887 1.00796 1.17876 0.90416 0.93945 0.92001 1.19654 1.45122 0.95679 0.93344 0.90637 1.26689 0.94710 0.99916 0.95885 1.69946 1.32596 1.39148 1.02806 0.85342 0.78913 0.77877 0.78483 1.18641 1.18996 1.18350 1.20749 1.06544 0.95543 1.00051 1.19866 1.03436 0.90906 0.99390 0.92776 0.90587 0.93000 0.90814 0.94675 0.84094 0.92887 0.91137 0.91850 0.91541 0.94220 0.93525 0.91977 0.86774 0.88629 0.90063 0.87527 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 10.14 71.98 0.73 -1.74 16 2 C 0.05 0.99 6.23 86.30 0.54 1.53 16 3 N -0.70 -16.96 6.28 -491.58 -3.09 -20.05 16 4 C 0.10 2.40 2.55 44.92 0.11 2.51 16 5 H 0.08 1.51 7.76 -2.38 -0.02 1.49 16 6 C -0.10 -2.48 5.47 30.59 0.17 -2.32 16 7 C -0.15 -3.33 9.45 71.98 0.68 -2.66 16 8 C 0.06 1.85 3.78 71.98 0.27 2.12 16 9 O -0.31 -12.27 9.19 -89.89 -0.83 -13.09 16 10 C 0.00 -0.02 6.71 22.79 0.15 0.13 16 11 C -0.17 -8.15 8.96 22.11 0.20 -7.95 16 12 C -0.16 -8.75 8.70 22.49 0.20 -8.56 16 13 C 0.06 3.31 5.56 -21.28 -0.12 3.19 16 14 C -0.51 -28.00 8.98 23.40 0.21 -27.79 16 15 H 0.08 4.02 7.98 -2.91 -0.02 4.00 16 16 C 0.04 2.25 4.90 85.23 0.42 2.67 16 17 N -0.82 -43.30 11.51 21.82 0.25 -43.05 16 18 Si 0.97 38.41 29.64 68.60 2.03 40.45 16 19 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 20 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 C -0.21 -10.65 9.74 22.48 0.22 -10.43 16 23 C -0.12 -5.52 9.92 22.11 0.22 -5.30 16 24 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 27 H 0.07 1.31 7.47 -2.39 -0.02 1.29 16 28 H 0.04 0.58 7.98 -2.39 -0.02 0.56 16 29 H 0.34 8.65 8.25 -89.69 -0.74 7.91 16 30 H 0.05 1.59 7.57 -2.39 -0.02 1.57 16 31 H 0.07 1.47 7.47 -2.39 -0.02 1.45 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.04 1.05 6.74 -2.39 -0.02 1.03 16 35 H 0.05 1.43 7.52 -2.38 -0.02 1.42 16 36 H 0.06 1.86 6.31 -2.39 -0.02 1.85 16 37 H 0.11 4.72 6.27 -2.91 -0.02 4.71 16 38 H 0.10 5.27 6.43 -2.91 -0.02 5.25 16 39 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 40 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 41 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -60.16 331.90 2.64 -57.52 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: 0.27 Total: 32.80 kcal Atomic # 6 Polarization: -58.58 SS G_CDS: 4.00 Total: -54.58 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -2.83 Total: -63.09 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.83 Total: -13.09 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.45 kcal Total: -60.16 2.64 -57.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403431391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.325 kcal (2) G-P(sol) polarization free energy of solvation -60.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds