Wall clock time and date at job start Mon Mar 30 2020 06:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46937 * 2 1 4 4 H 1.09001 * 109.47521 * 54.99461 * 3 2 1 5 5 N 1.46901 * 109.47217 * 295.00049 * 3 2 1 6 6 C 1.52993 * 109.47510 * 174.99785 * 3 2 1 7 7 C 1.53003 * 109.47792 * 185.00071 * 6 3 2 8 8 C 1.53000 * 109.47334 * 179.97438 * 7 6 3 9 9 O 1.42899 * 109.47250 * 179.97438 * 8 7 6 10 10 C 1.35669 * 117.00484 * 179.97438 * 9 8 7 11 11 C 1.39316 * 119.81367 * 359.73146 * 10 9 8 12 12 C 1.36438 * 120.18553 * 179.75956 * 11 10 9 13 13 C 1.40835 * 119.80999 * 0.51273 * 12 11 10 14 14 C 1.41209 * 120.18257 * 179.72226 * 13 12 11 15 15 H 1.08002 * 120.00192 * 204.56044 * 14 13 12 16 16 C 1.39892 * 120.00144 * 24.55306 * 14 13 12 17 17 N 1.30885 * 119.99664 * 17.94419 * 16 14 13 18 18 Si 1.86798 * 120.00398 * 197.93763 * 16 14 13 19 19 H 1.48502 * 109.47060 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47311 * 120.00381 * 18 16 14 21 21 H 1.48506 * 109.47054 * 240.00331 * 18 16 14 22 22 C 1.40836 * 119.64200 * 359.74025 * 13 12 11 23 23 C 1.36442 * 119.81024 * 0.02562 * 22 13 12 24 24 H 1.09005 * 109.47244 * 60.00435 * 1 2 3 25 25 H 1.08993 * 109.47223 * 299.99855 * 1 2 3 26 26 H 1.09005 * 109.46694 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46811 * 119.99857 * 2 1 3 28 28 H 1.09002 * 109.47329 * 239.99996 * 2 1 3 29 29 H 1.00907 * 111.00303 * 176.05010 * 5 3 2 30 30 H 1.00899 * 110.99555 * 299.99956 * 5 3 2 31 31 H 1.09000 * 109.47245 * 305.00104 * 6 3 2 32 32 H 1.09000 * 109.47311 * 64.99809 * 6 3 2 33 33 H 1.09000 * 109.46481 * 299.99857 * 7 6 3 34 34 H 1.09000 * 109.46907 * 59.99490 * 7 6 3 35 35 H 1.08998 * 109.47092 * 300.00205 * 8 7 6 36 36 H 1.09003 * 109.46797 * 60.00204 * 8 7 6 37 37 H 1.08002 * 119.90723 * 0.02562 * 11 10 9 38 38 H 1.08001 * 120.09892 * 180.25086 * 12 11 10 39 39 H 0.97000 * 119.99897 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.09554 * 179.97438 * 22 13 12 41 41 H 1.08000 * 119.90771 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 0.8417 5 7 1.6513 2.0992 -1.2552 6 6 3.5647 1.4444 0.1258 7 6 4.0644 2.8851 0.2512 8 6 5.5892 2.8869 0.3776 9 8 6.0559 4.2325 0.4941 10 6 7.3952 4.4116 0.6160 11 6 8.2435 3.3066 0.6285 12 6 9.5919 3.4782 0.7458 13 6 10.1247 4.7764 0.8652 14 6 11.5186 4.9628 0.9929 15 1 11.9032 5.8536 1.4672 16 6 12.4015 3.9935 0.5051 17 7 11.9850 3.1061 -0.3621 18 14 14.1749 3.9657 1.0914 19 1 14.3918 5.0662 2.0646 20 1 14.4596 2.6634 1.7458 21 1 15.0830 4.1450 -0.0699 22 6 9.2597 5.8878 0.8570 23 6 7.9140 5.6991 0.7341 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.9203 3.0718 -1.2529 30 1 2.0422 1.6179 -2.0512 31 1 3.8570 0.8802 1.0114 32 1 4.0029 0.9837 -0.7595 33 1 3.7722 3.4493 -0.6345 34 1 3.6262 3.3459 1.1365 35 1 5.8810 2.3227 1.2634 36 1 6.0276 2.4261 -0.5076 37 1 7.8329 2.3115 0.5409 38 1 10.2486 2.6208 0.7512 39 1 12.5970 2.4337 -0.7000 40 1 9.6604 6.8865 0.9485 41 1 7.2492 6.5502 0.7280 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403463431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:29 Heat of formation + Delta-G solvation = -49.934212 kcal Electronic energy + Delta-G solvation = -18888.516683 eV Core-core repulsion = 15960.103745 eV Total energy + Delta-G solvation = -2928.412938 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.89707 -37.76700 -36.37757 -33.54065 -32.77187 -31.03397 -29.64929 -29.14824 -27.31542 -24.89232 -23.90336 -21.75748 -20.88653 -20.63879 -20.14296 -17.36301 -16.90589 -16.47346 -15.82521 -15.37791 -14.88481 -14.70153 -14.02811 -13.90568 -13.78574 -13.41545 -13.08513 -12.63078 -12.48740 -12.35515 -12.05318 -11.78882 -11.69189 -11.37346 -11.17461 -11.08893 -11.03905 -10.88407 -10.83921 -10.71702 -10.50482 -9.88401 -9.78261 -9.37846 -9.01955 -8.87030 -7.66292 -7.02221 -6.73837 -4.25947 2.75200 2.95553 3.07703 3.13054 3.19885 3.93771 3.95831 4.39702 4.60517 4.66502 4.79566 4.89491 5.03258 5.21714 5.31332 5.40757 5.55325 5.61705 5.63562 5.68070 5.75887 5.80479 5.81409 6.01127 6.11398 6.13025 6.16320 6.18095 6.27903 6.73048 6.88786 6.96771 7.06051 7.25779 7.27344 7.40782 7.55219 7.90460 7.99617 8.14720 8.44455 8.64857 8.89390 8.98711 10.20918 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041024 B = 0.002984 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.365023 B = 9381.635161 C = 9860.326121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C 0.091 3.909 4 H 0.081 0.919 5 N -0.844 5.844 6 C -0.153 4.153 7 C -0.117 4.117 8 C 0.070 3.930 9 O -0.331 6.331 10 C -0.009 4.009 11 C -0.174 4.174 12 C -0.134 4.134 13 C 0.086 3.914 14 C -0.462 4.462 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.800 5.800 18 Si 0.907 3.093 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.275 1.275 22 C -0.196 4.196 23 C -0.114 4.114 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.343 0.657 30 H 0.338 0.662 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.100 0.900 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.134 -5.791 -0.049 15.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.021 4.021 4 H 0.099 0.901 5 N -0.373 5.373 6 C -0.193 4.193 7 C -0.155 4.155 8 C -0.007 4.007 9 O -0.248 6.248 10 C -0.052 4.052 11 C -0.193 4.193 12 C -0.154 4.154 13 C 0.084 3.916 14 C -0.492 4.492 15 H 0.096 0.904 16 C -0.143 4.143 17 N -0.427 5.427 18 Si 0.731 3.269 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.201 1.201 22 C -0.216 4.216 23 C -0.133 4.133 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.150 0.850 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.945 -6.012 0.016 16.109 hybrid contribution 2.128 -0.229 -0.007 2.140 sum -12.817 -6.242 0.009 14.256 Atomic orbital electron populations 1.21666 0.95287 1.00724 1.02470 1.21549 0.96699 0.95422 1.01778 1.21494 0.91944 0.95387 0.93235 0.90121 1.58976 1.67240 1.07134 1.03967 1.22366 0.97400 0.96647 1.02873 1.21509 0.94478 0.96634 1.02856 1.22407 0.93629 0.84329 1.00298 1.85775 1.21814 1.26638 1.90528 1.18570 0.80549 0.94261 1.11823 1.20615 0.95113 0.95619 1.07921 1.20947 0.92580 0.98115 1.03747 1.17607 0.93306 0.90771 0.89897 1.19498 0.90730 1.04848 1.34170 0.90437 1.25887 1.01207 0.94344 0.92812 1.69853 1.37461 1.14056 1.21286 0.86288 0.81760 0.79241 0.79574 1.18429 1.19804 1.20067 1.20600 0.92112 0.97739 1.11149 1.19619 0.95026 0.93078 1.05568 0.91585 0.93181 0.93570 0.91802 0.92184 0.84366 0.84971 0.91174 0.91740 0.91521 0.91115 0.93285 0.93364 0.88857 0.86120 0.91064 0.88194 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.80 37.16 0.36 -0.79 16 2 C -0.12 -0.95 5.58 -26.73 -0.15 -1.10 16 3 C 0.09 0.80 2.80 -67.72 -0.19 0.61 16 4 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 5 N -0.84 -7.25 8.64 -4.67 -0.04 -7.29 16 6 C -0.15 -1.50 4.86 -26.73 -0.13 -1.63 16 7 C -0.12 -1.42 5.35 -26.73 -0.14 -1.57 16 8 C 0.07 1.13 4.73 37.16 0.18 1.31 16 9 O -0.33 -6.87 10.12 -18.71 -0.19 -7.06 16 10 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 11 C -0.17 -4.16 8.96 -39.83 -0.36 -4.52 16 12 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 13 C 0.09 2.33 5.57 -106.80 -0.60 1.74 16 14 C -0.46 -12.35 9.04 -37.84 -0.34 -12.69 16 15 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 16 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 17 N -0.80 -20.83 10.96 55.54 0.61 -20.22 16 18 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 22 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 23 C -0.11 -2.70 9.92 -39.83 -0.40 -3.10 16 24 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.34 2.92 7.55 -39.29 -0.30 2.62 16 30 H 0.34 2.67 9.00 -39.29 -0.35 2.32 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.78 6.87 -51.93 -0.36 0.43 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.79 7.63 -51.93 -0.40 0.39 16 36 H 0.05 0.79 7.66 -51.93 -0.40 0.39 16 37 H 0.09 2.00 6.27 -52.49 -0.33 1.67 16 38 H 0.12 3.25 6.16 -52.49 -0.32 2.93 16 39 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 40 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 41 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -28.09 333.83 -9.09 -37.18 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.63 Total: 8.22 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -2.83 Total: -29.58 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: 0.57 Total: -27.51 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.19 Total: -7.06 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.09 -9.09 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403463431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.759 kcal (2) G-P(sol) polarization free energy of solvation -28.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds