Wall clock time and date at job start Mon Mar 30 2020 06:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46937 * 2 1 4 4 H 1.09001 * 109.47521 * 54.99461 * 3 2 1 5 5 N 1.46901 * 109.47217 * 295.00049 * 3 2 1 6 6 C 1.52993 * 109.47510 * 174.99785 * 3 2 1 7 7 C 1.53003 * 109.47792 * 185.00071 * 6 3 2 8 8 C 1.53000 * 109.47334 * 179.97438 * 7 6 3 9 9 O 1.42899 * 109.47250 * 179.97438 * 8 7 6 10 10 C 1.35669 * 117.00484 * 179.97438 * 9 8 7 11 11 C 1.39316 * 119.81367 * 359.73146 * 10 9 8 12 12 C 1.36438 * 120.18553 * 179.75956 * 11 10 9 13 13 C 1.40835 * 119.80999 * 0.51273 * 12 11 10 14 14 C 1.41209 * 120.18257 * 179.72226 * 13 12 11 15 15 H 1.08002 * 120.00192 * 204.56044 * 14 13 12 16 16 C 1.39892 * 120.00144 * 24.55306 * 14 13 12 17 17 N 1.30885 * 119.99664 * 17.94419 * 16 14 13 18 18 Si 1.86798 * 120.00398 * 197.93763 * 16 14 13 19 19 H 1.48502 * 109.47060 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47311 * 120.00381 * 18 16 14 21 21 H 1.48506 * 109.47054 * 240.00331 * 18 16 14 22 22 C 1.40836 * 119.64200 * 359.74025 * 13 12 11 23 23 C 1.36442 * 119.81024 * 0.02562 * 22 13 12 24 24 H 1.09005 * 109.47244 * 60.00435 * 1 2 3 25 25 H 1.08993 * 109.47223 * 299.99855 * 1 2 3 26 26 H 1.09005 * 109.46694 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46811 * 119.99857 * 2 1 3 28 28 H 1.09002 * 109.47329 * 239.99996 * 2 1 3 29 29 H 1.00907 * 111.00303 * 176.05010 * 5 3 2 30 30 H 1.00899 * 110.99555 * 299.99956 * 5 3 2 31 31 H 1.09000 * 109.47245 * 305.00104 * 6 3 2 32 32 H 1.09000 * 109.47311 * 64.99809 * 6 3 2 33 33 H 1.09000 * 109.46481 * 299.99857 * 7 6 3 34 34 H 1.09000 * 109.46907 * 59.99490 * 7 6 3 35 35 H 1.08998 * 109.47092 * 300.00205 * 8 7 6 36 36 H 1.09003 * 109.46797 * 60.00204 * 8 7 6 37 37 H 1.08002 * 119.90723 * 0.02562 * 11 10 9 38 38 H 1.08001 * 120.09892 * 180.25086 * 12 11 10 39 39 H 0.97000 * 119.99897 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.09554 * 179.97438 * 22 13 12 41 41 H 1.08000 * 119.90771 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 0.8417 5 7 1.6513 2.0992 -1.2552 6 6 3.5647 1.4444 0.1258 7 6 4.0644 2.8851 0.2512 8 6 5.5892 2.8869 0.3776 9 8 6.0559 4.2325 0.4941 10 6 7.3952 4.4116 0.6160 11 6 8.2435 3.3066 0.6285 12 6 9.5919 3.4782 0.7458 13 6 10.1247 4.7764 0.8652 14 6 11.5186 4.9628 0.9929 15 1 11.9032 5.8536 1.4672 16 6 12.4015 3.9935 0.5051 17 7 11.9850 3.1061 -0.3621 18 14 14.1749 3.9657 1.0914 19 1 14.3918 5.0662 2.0646 20 1 14.4596 2.6634 1.7458 21 1 15.0830 4.1450 -0.0699 22 6 9.2597 5.8878 0.8570 23 6 7.9140 5.6991 0.7341 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.9203 3.0718 -1.2529 30 1 2.0422 1.6179 -2.0512 31 1 3.8570 0.8802 1.0114 32 1 4.0029 0.9837 -0.7595 33 1 3.7722 3.4493 -0.6345 34 1 3.6262 3.3459 1.1365 35 1 5.8810 2.3227 1.2634 36 1 6.0276 2.4261 -0.5076 37 1 7.8329 2.3115 0.5409 38 1 10.2486 2.6208 0.7512 39 1 12.5970 2.4337 -0.7000 40 1 9.6604 6.8865 0.9485 41 1 7.2492 6.5502 0.7280 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403463431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:28 Heat of formation + Delta-G solvation = -65.352065 kcal Electronic energy + Delta-G solvation = -18889.185251 eV Core-core repulsion = 15960.103745 eV Total energy + Delta-G solvation = -2929.081506 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.57791 -38.75006 -37.99249 -35.32097 -33.86184 -31.81463 -31.55456 -30.94800 -28.37119 -26.65330 -25.03067 -23.20555 -22.48519 -21.72826 -21.34938 -19.29187 -18.61439 -17.30041 -17.19446 -16.90618 -16.25709 -15.79028 -15.66735 -15.06236 -14.85966 -14.78038 -14.23513 -14.09930 -13.91201 -13.73415 -13.59077 -13.17581 -12.96612 -12.77359 -12.65315 -12.38522 -12.35546 -12.02167 -11.87618 -11.68403 -11.64961 -11.51065 -11.43611 -11.23430 -10.88015 -9.59786 -9.56490 -8.93976 -8.62193 -6.24632 0.90797 1.01693 1.38901 1.49439 1.54325 2.21766 2.54796 2.70197 3.67604 3.69015 3.81070 3.90288 3.98317 4.23168 4.25789 4.32974 4.40279 4.44264 4.46082 4.55651 4.74305 4.76695 4.87773 4.92963 5.00829 5.05469 5.13211 5.14368 5.19629 5.23641 5.34824 5.41386 5.50535 5.53117 5.64283 5.95146 6.04322 6.21118 6.29820 6.54068 6.61001 6.77206 6.93121 7.07658 8.34940 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041024 B = 0.002984 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.365023 B = 9381.635161 C = 9860.326121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.096 3.904 4 H 0.077 0.923 5 N -0.846 5.846 6 C -0.145 4.145 7 C -0.107 4.107 8 C 0.061 3.939 9 O -0.337 6.337 10 C -0.003 4.003 11 C -0.177 4.177 12 C -0.156 4.156 13 C 0.054 3.946 14 C -0.498 4.498 15 H 0.077 0.923 16 C 0.032 3.968 17 N -0.832 5.832 18 Si 0.983 3.017 19 H -0.258 1.258 20 H -0.265 1.265 21 H -0.266 1.266 22 C -0.205 4.205 23 C -0.122 4.122 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.343 0.657 30 H 0.342 0.658 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.287 0.713 40 H 0.111 0.889 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.762 -6.269 0.069 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.015 4.015 4 H 0.096 0.904 5 N -0.376 5.376 6 C -0.185 4.185 7 C -0.144 4.144 8 C -0.015 4.015 9 O -0.253 6.253 10 C -0.047 4.047 11 C -0.195 4.195 12 C -0.176 4.176 13 C 0.052 3.948 14 C -0.527 4.527 15 H 0.095 0.905 16 C -0.181 4.181 17 N -0.459 5.459 18 Si 0.804 3.196 19 H -0.182 1.182 20 H -0.190 1.190 21 H -0.191 1.191 22 C -0.225 4.225 23 C -0.140 4.140 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.604 -6.493 0.127 16.901 hybrid contribution 2.159 -0.095 -0.079 2.162 sum -13.445 -6.589 0.048 14.973 Atomic orbital electron populations 1.21635 0.95160 1.01112 1.01995 1.21547 0.96760 0.94907 1.02148 1.21440 0.90996 0.95876 0.93231 0.90436 1.58976 1.67303 1.07250 1.04091 1.22324 0.98104 0.94927 1.03123 1.21476 0.91319 0.98407 1.03219 1.22757 0.96166 0.82251 1.00278 1.85782 1.19969 1.29452 1.90112 1.18713 0.81840 0.94064 1.10102 1.20808 0.94404 0.97053 1.07277 1.20921 0.93474 0.97623 1.05588 1.17976 0.94179 0.91657 0.91030 1.19745 0.91338 1.05956 1.35705 0.90515 1.26756 1.05621 0.93478 0.92276 1.69900 1.39362 1.14669 1.21922 0.85149 0.75923 0.79417 0.79139 1.18153 1.18965 1.19129 1.20818 0.92734 0.97891 1.11023 1.19921 0.94971 0.94239 1.04904 0.92412 0.93259 0.92797 0.91256 0.92011 0.84300 0.84465 0.90878 0.91547 0.90989 0.90939 0.93102 0.93502 0.86753 0.87529 0.90242 0.87063 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.80 71.98 0.71 -1.32 16 2 C -0.12 -1.65 5.58 30.59 0.17 -1.48 16 3 C 0.10 1.51 2.80 44.91 0.13 1.63 16 4 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 5 N -0.85 -13.05 8.64 -168.69 -1.46 -14.50 16 6 C -0.15 -2.54 4.86 30.59 0.15 -2.39 16 7 C -0.11 -2.38 5.35 30.60 0.16 -2.22 16 8 C 0.06 1.88 4.73 71.98 0.34 2.22 16 9 O -0.34 -13.47 10.12 -89.86 -0.91 -14.38 16 10 C 0.00 -0.16 6.71 22.79 0.15 0.00 16 11 C -0.18 -8.45 8.96 22.11 0.20 -8.26 16 12 C -0.16 -8.41 8.64 22.49 0.19 -8.22 16 13 C 0.05 2.96 5.57 -21.28 -0.12 2.84 16 14 C -0.50 -27.16 9.04 23.40 0.21 -26.94 16 15 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 16 C 0.03 1.65 5.13 85.23 0.44 2.09 16 17 N -0.83 -43.94 10.96 21.82 0.24 -43.70 16 18 Si 0.98 38.46 29.60 68.60 2.03 40.49 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 22 C -0.21 -10.31 9.74 22.49 0.22 -10.09 16 23 C -0.12 -5.68 9.92 22.11 0.22 -5.46 16 24 H 0.06 0.92 7.75 -2.38 -0.02 0.90 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.34 5.24 7.55 -89.69 -0.68 4.56 16 30 H 0.34 4.80 9.00 -89.69 -0.81 4.00 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.55 6.87 -2.39 -0.02 1.53 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.56 7.63 -2.39 -0.02 1.54 16 36 H 0.05 1.47 7.66 -2.39 -0.02 1.45 16 37 H 0.11 4.84 6.27 -2.91 -0.02 4.82 16 38 H 0.11 5.93 6.16 -2.91 -0.02 5.92 16 39 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 40 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 41 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -59.98 333.83 2.61 -57.38 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.47 Total: 32.32 kcal Atomic # 6 Polarization: -60.77 SS G_CDS: 3.17 Total: -57.60 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -1.22 Total: -58.20 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.91 Total: -14.38 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -59.98 2.61 -57.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403463431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.975 kcal (2) G-P(sol) polarization free energy of solvation -59.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds