Wall clock time and date at job start Mon Mar 30 2020 07:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 119.99974 * 2 1 4 4 N 1.46504 * 109.47074 * 124.72482 * 3 2 1 5 5 C 1.46497 * 119.99728 * 86.07782 * 4 3 2 6 6 C 1.50689 * 109.47407 * 95.82162 * 5 4 3 7 7 H 1.08003 * 120.00176 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00311 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99867 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00205 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47140 * 90.00162 * 10 8 6 12 12 H 1.48503 * 109.47221 * 209.99836 * 10 8 6 13 13 H 1.48497 * 109.47175 * 330.00089 * 10 8 6 14 14 C 1.34770 * 119.99970 * 266.07658 * 4 3 2 15 15 O 1.21287 * 120.00349 * 5.44338 * 14 4 3 16 16 C 1.50698 * 120.00162 * 185.44594 * 14 4 3 17 17 H 1.09001 * 109.61460 * 37.81972 * 16 14 4 18 18 C 1.53303 * 109.61788 * 277.45840 * 16 14 4 19 19 C 1.52765 * 108.64352 * 165.99809 * 18 16 14 20 20 C 1.52076 * 110.64431 * 54.61893 * 19 18 16 21 21 H 1.09007 * 114.26172 * 193.87969 * 20 19 18 22 22 C 1.52305 * 119.84025 * 49.66438 * 20 19 18 23 23 C 1.52066 * 120.02107 * 338.40630 * 20 19 18 24 24 H 1.08997 * 116.53932 * 216.99243 * 23 20 19 25 25 C 1.52716 * 120.51997 * 5.29397 * 23 20 19 26 26 H 1.08003 * 119.99990 * 180.27516 * 1 2 3 27 27 H 1.08004 * 120.00389 * 0.27484 * 1 2 3 28 28 H 1.08004 * 120.00389 * 179.72516 * 2 1 3 29 29 H 1.09000 * 109.47079 * 244.73099 * 3 2 1 30 30 H 1.09002 * 109.46893 * 4.72560 * 3 2 1 31 31 H 1.09009 * 109.46644 * 215.82536 * 5 4 3 32 32 H 1.08998 * 109.46982 * 335.81833 * 5 4 3 33 33 H 0.96998 * 120.00267 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.61908 * 285.55635 * 18 16 14 35 35 H 1.09004 * 109.61539 * 46.10009 * 18 16 14 36 36 H 1.09001 * 109.11435 * 294.36468 * 19 18 16 37 37 H 1.09006 * 109.29255 * 174.97674 * 19 18 16 38 38 H 1.08994 * 117.53647 * 142.80571 * 22 20 19 39 39 H 1.08999 * 117.59523 * 357.52673 * 22 20 19 40 40 H 1.09001 * 109.35719 * 218.31527 * 25 23 20 41 41 H 1.09011 * 109.35250 * 98.73722 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9890 1.3347 1.1353 5 6 4.3261 0.7501 1.0056 6 6 5.3154 1.8317 0.6560 7 1 4.9816 2.8524 0.5414 8 6 6.6468 1.5183 0.4824 9 7 7.0533 0.2752 0.6214 10 14 7.8733 2.8591 0.0498 11 1 8.4296 3.4423 1.2971 12 1 8.9751 2.2797 -0.7599 13 1 7.1904 3.9213 -0.7316 14 6 2.6104 1.8995 2.2988 15 8 1.4724 2.2946 2.4392 16 6 3.6012 2.0403 3.4256 17 1 4.5819 2.2911 3.0213 18 6 3.6868 0.7221 4.2035 19 6 4.9230 0.7634 5.0999 20 6 4.8986 1.9960 5.9905 21 1 5.8487 2.2154 6.4777 22 6 3.6470 2.3265 6.7929 23 6 4.0583 3.2012 5.5985 24 1 4.4795 4.1816 5.8208 25 6 3.1415 3.1438 4.3785 26 1 -0.5400 -0.9353 0.0045 27 1 -0.5401 0.9353 -0.0045 28 1 1.8500 -0.9353 0.0045 29 1 2.6250 1.4005 -0.9293 30 1 1.3581 2.1319 0.0847 31 1 4.6129 0.2864 1.9495 32 1 4.3183 -0.0035 0.2181 33 1 7.9899 0.0546 0.4989 34 1 2.7956 0.6021 4.8195 35 1 3.7667 -0.1106 3.5046 36 1 5.8161 0.7884 4.4755 37 1 4.9457 -0.1304 5.7235 38 1 3.7836 2.7409 7.7917 39 1 2.7806 1.6771 6.6673 40 1 3.1684 4.1027 3.8609 41 1 2.1211 2.9391 4.7028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421905664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:48 Heat of formation + Delta-G solvation = -10.062559 kcal Electronic energy + Delta-G solvation = -20816.554865 eV Core-core repulsion = 17889.870891 eV Total energy + Delta-G solvation = -2926.683973 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93364 -38.21989 -35.39518 -33.71735 -32.56547 -31.95395 -30.40142 -27.46444 -26.08814 -24.25507 -23.30610 -22.28862 -20.89174 -19.62107 -18.58038 -17.73584 -16.65927 -16.18906 -15.95442 -15.35485 -14.58601 -14.41261 -14.08536 -13.63466 -13.40472 -13.23222 -12.87020 -12.57795 -12.27704 -12.12573 -11.65012 -11.62974 -11.29019 -11.12758 -11.01736 -10.81243 -10.77963 -10.71613 -10.50420 -10.19907 -10.04779 -9.71262 -9.43580 -9.31322 -9.20246 -8.75575 -8.52511 -7.69750 -6.19043 -4.25995 2.59770 3.21790 3.29315 3.32220 3.47269 3.97054 4.12832 4.33602 4.91847 5.05897 5.12574 5.13827 5.33430 5.36773 5.47424 5.49814 5.60727 5.62863 5.86978 5.94345 5.97080 6.01099 6.10368 6.17119 6.19497 6.32025 6.36559 6.38496 6.50843 6.59638 6.63322 6.66606 6.73796 6.92948 6.95217 7.14707 7.23377 7.57387 7.76291 8.06245 8.37437 8.80136 9.08728 9.41724 10.87275 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.009840 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.676523 B = 2844.858279 C = 4596.580675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.156 4.156 3 C 0.142 3.858 4 N -0.594 5.594 5 C 0.234 3.766 6 C -0.537 4.537 7 H 0.060 0.940 8 C 0.067 3.933 9 N -0.889 5.889 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.523 3.477 15 O -0.576 6.576 16 C -0.105 4.105 17 H 0.119 0.881 18 C -0.103 4.103 19 C -0.087 4.087 20 C -0.137 4.137 21 H 0.095 0.905 22 C -0.187 4.187 23 C -0.143 4.143 24 H 0.098 0.902 25 C -0.069 4.069 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.265 0.735 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 0.562 6.241 7.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C 0.019 3.981 4 N -0.323 5.323 5 C 0.114 3.886 6 C -0.575 4.575 7 H 0.079 0.921 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.721 3.279 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.312 3.688 15 O -0.457 6.457 16 C -0.126 4.126 17 H 0.137 0.863 18 C -0.141 4.141 19 C -0.124 4.124 20 C -0.155 4.155 21 H 0.113 0.887 22 C -0.224 4.224 23 C -0.161 4.161 24 H 0.117 0.883 25 C -0.107 4.107 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.361 0.641 6.280 8.282 hybrid contribution 0.969 0.593 -0.329 1.183 sum -4.392 1.234 5.951 7.498 Atomic orbital electron populations 1.23722 0.95876 1.01263 1.01979 1.23412 0.96115 0.99439 0.98599 1.20410 0.92525 0.94816 0.90377 1.48213 1.16392 1.56998 1.10719 1.19520 0.76479 0.93982 0.98584 1.21488 0.92430 0.94897 1.48731 0.92139 1.24915 0.98245 0.95515 0.94942 1.69919 1.16545 1.17336 1.48933 0.86566 0.80809 0.81911 0.78652 1.20412 1.21114 1.19823 1.20533 0.87969 0.76512 0.83761 1.90561 1.20984 1.51793 1.82404 1.21338 1.01140 0.96523 0.93601 0.86345 1.21470 0.97910 0.96772 0.97964 1.20822 0.99236 0.95486 0.96879 1.21824 0.95065 0.97036 1.01563 0.88725 1.23110 0.99472 1.04276 0.95492 1.22206 1.02209 0.95328 0.96355 0.88342 1.20839 0.98127 0.98277 0.93420 0.89067 0.88712 0.87564 0.89897 0.90575 0.93877 0.94703 0.92553 0.92401 0.90890 0.90297 0.91861 0.89549 0.88845 0.91796 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 14.32 29.02 0.42 -2.44 16 2 C -0.16 -2.64 9.85 -36.02 -0.35 -2.99 16 3 C 0.14 2.68 5.82 -5.19 -0.03 2.65 16 4 N -0.59 -12.57 2.46 -176.43 -0.43 -13.01 16 5 C 0.23 5.44 4.84 -5.20 -0.03 5.41 16 6 C -0.54 -13.60 8.08 -34.45 -0.28 -13.88 16 7 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 8 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -23.83 13.29 55.43 0.74 -23.09 16 10 Si 0.89 20.24 29.54 -169.99 -5.02 15.21 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 C 0.52 11.11 6.73 -10.99 -0.07 11.03 16 15 O -0.58 -13.18 15.51 5.55 0.09 -13.09 16 16 C -0.11 -1.99 1.66 -91.68 -0.15 -2.14 16 17 H 0.12 2.50 6.27 -51.93 -0.33 2.18 16 18 C -0.10 -1.76 4.61 -26.70 -0.12 -1.89 16 19 C -0.09 -1.34 5.92 -27.32 -0.16 -1.50 16 20 C -0.14 -1.94 6.00 -91.92 -0.55 -2.49 16 21 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 22 C -0.19 -2.42 9.66 -26.74 -0.26 -2.68 16 23 C -0.14 -2.08 6.19 -90.90 -0.56 -2.65 16 24 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 25 C -0.07 -1.17 4.75 -26.94 -0.13 -1.29 16 26 H 0.09 1.18 8.06 -52.48 -0.42 0.76 16 27 H 0.09 1.41 7.84 -52.48 -0.41 0.99 16 28 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 29 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 30 H 0.08 1.45 7.04 -51.93 -0.37 1.08 16 31 H 0.04 1.02 5.22 -51.92 -0.27 0.75 16 32 H 0.03 0.85 8.03 -51.93 -0.42 0.44 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.06 0.94 7.13 -51.93 -0.37 0.57 16 35 H 0.07 1.33 6.37 -51.93 -0.33 1.00 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.24 7.28 -51.93 -0.38 0.86 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.26 7.58 -51.92 -0.39 0.86 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -27.43 327.95 -8.68 -36.11 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.61 Total: 6.15 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -2.38 Total: -13.23 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.30 Total: -36.09 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.43 -8.68 -36.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421905664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.046 kcal (2) G-P(sol) polarization free energy of solvation -27.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds