Wall clock time and date at job start Mon Mar 30 2020 07:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00126 * 2 1 4 4 N 1.46492 * 109.47441 * 124.06417 * 3 2 1 5 5 C 1.46505 * 120.00223 * 273.81798 * 4 3 2 6 6 C 1.50698 * 109.46687 * 264.85390 * 5 4 3 7 7 H 1.08004 * 120.00325 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99880 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99955 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47057 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46852 * 120.00596 * 10 8 6 13 13 H 1.48499 * 109.46812 * 240.00210 * 10 8 6 14 14 C 1.34780 * 120.00298 * 93.81151 * 4 3 2 15 15 O 1.21287 * 119.99748 * 4.15517 * 14 4 3 16 16 C 1.50700 * 120.00397 * 184.14755 * 14 4 3 17 17 H 1.09002 * 109.26486 * 24.84702 * 16 14 4 18 18 C 1.52869 * 109.24127 * 265.35653 * 16 14 4 19 19 C 1.53299 * 108.59142 * 184.86094 * 18 16 14 20 20 C 1.52881 * 108.58199 * 74.44371 * 19 18 16 21 21 C 1.52717 * 110.15049 * 305.47904 * 20 19 18 22 22 H 1.08997 * 114.90896 * 232.15358 * 21 20 19 23 23 C 1.53654 * 116.02932 * 90.20145 * 21 20 19 24 24 C 1.52065 * 120.52151 * 21.47320 * 21 20 19 25 25 H 1.09002 * 115.30916 * 211.01222 * 24 21 20 26 26 H 1.08001 * 120.00284 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99926 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99968 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46919 * 4.06200 * 3 2 1 30 30 H 1.09002 * 109.46814 * 244.06325 * 3 2 1 31 31 H 1.08993 * 109.46918 * 24.84864 * 5 4 3 32 32 H 1.08998 * 109.47271 * 144.85810 * 5 4 3 33 33 H 0.97000 * 119.99943 * 179.97438 * 9 8 6 34 34 H 1.08995 * 109.62055 * 304.59707 * 18 16 14 35 35 H 1.09010 * 109.61584 * 65.13186 * 18 16 14 36 36 H 1.08995 * 109.61844 * 314.71687 * 19 18 16 37 37 H 1.08997 * 109.77016 * 194.26456 * 19 18 16 38 38 H 1.08998 * 109.35924 * 185.27058 * 20 19 18 39 39 H 1.08999 * 109.24129 * 65.61840 * 20 19 18 40 40 H 1.08999 * 117.53664 * 140.93626 * 23 21 20 41 41 H 1.09006 * 117.59410 * 355.66453 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9777 1.3412 1.1441 5 6 2.5005 1.8068 2.4487 6 6 2.8224 3.2704 2.6081 7 1 3.3318 3.8006 1.8171 8 6 2.4664 3.9325 3.7639 9 7 1.8465 3.2868 4.7274 10 14 2.8661 5.7466 3.9619 11 1 3.5617 6.2359 2.7445 12 1 1.6084 6.5123 4.1545 13 1 3.7453 5.9336 5.1439 14 6 4.2578 0.9460 0.9968 15 8 4.6732 0.6322 -0.0987 16 6 5.1730 0.8942 2.1929 17 1 4.5766 0.7699 3.0969 18 6 5.9589 2.2023 2.2829 19 6 6.9704 2.0869 3.4290 20 6 8.1161 1.1805 2.9782 21 6 7.5675 -0.1608 2.4965 22 1 8.0266 -1.0362 2.9558 23 6 7.2238 -0.2511 1.0016 24 6 6.1195 -0.2874 2.0498 25 1 5.6610 -1.2606 2.2252 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3575 2.1323 0.0728 30 1 2.6345 1.3949 -0.9242 31 1 1.4220 1.6629 2.5135 32 1 2.9911 1.2387 3.2390 33 1 1.5965 3.7526 5.5407 34 1 6.4865 2.3775 1.3454 35 1 5.2746 3.0276 2.4805 36 1 6.4846 1.6548 4.3038 37 1 7.3605 3.0739 3.6773 38 1 8.7953 1.0138 3.8142 39 1 8.6568 1.6631 2.1641 40 1 7.4597 -1.1819 0.4857 41 1 7.3229 0.6558 0.4051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597685001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:42 Heat of formation + Delta-G solvation = -5.847696 kcal Electronic energy + Delta-G solvation = -20870.736129 eV Core-core repulsion = 17944.234926 eV Total energy + Delta-G solvation = -2926.501203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.00743 -37.99450 -35.34556 -33.59766 -32.57645 -32.09153 -30.57357 -27.50175 -25.90741 -24.22334 -23.00758 -22.12804 -21.12544 -19.78378 -18.63497 -17.60285 -16.53454 -16.12864 -16.06156 -15.41237 -14.55167 -14.45653 -14.16871 -13.52628 -13.47959 -12.96193 -12.85871 -12.53144 -12.38304 -12.07825 -11.79263 -11.44254 -11.29868 -11.01923 -10.94075 -10.87354 -10.82482 -10.66072 -10.27609 -10.22377 -9.90219 -9.77121 -9.61225 -9.32558 -9.13292 -8.68378 -8.46487 -7.69072 -6.18749 -4.24992 2.57783 3.20270 3.29518 3.32756 3.48727 3.92378 4.26737 4.37925 4.96122 5.08719 5.14616 5.23196 5.33700 5.39302 5.51933 5.56465 5.60701 5.69986 5.79410 5.92511 6.00864 6.06457 6.12978 6.20606 6.22334 6.28229 6.36393 6.46467 6.48865 6.58070 6.66644 6.76200 6.84606 6.93398 6.96764 7.07977 7.24505 7.58676 7.77312 8.06715 8.37882 8.80753 9.10137 9.41937 10.87902 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.009520 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.364739 B = 2940.483992 C = 4693.459785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C 0.141 3.859 4 N -0.594 5.594 5 C 0.237 3.763 6 C -0.532 4.532 7 H 0.062 0.938 8 C 0.067 3.933 9 N -0.889 5.889 10 Si 0.891 3.109 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.524 3.476 15 O -0.570 6.570 16 C -0.067 4.067 17 H 0.102 0.898 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.088 4.088 21 C -0.154 4.154 22 H 0.096 0.904 23 C -0.157 4.157 24 C -0.121 4.121 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.675 -4.884 -3.057 8.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.174 4.174 3 C 0.018 3.982 4 N -0.324 5.324 5 C 0.118 3.882 6 C -0.571 4.571 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.718 3.282 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.207 1.207 14 C 0.313 3.687 15 O -0.451 6.451 16 C -0.088 4.088 17 H 0.120 0.880 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.125 4.125 21 C -0.172 4.172 22 H 0.114 0.886 23 C -0.194 4.194 24 C -0.139 4.139 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.796 -5.005 -3.430 8.391 hybrid contribution -0.078 0.880 0.356 0.952 sum 5.718 -4.125 -3.074 7.692 Atomic orbital electron populations 1.23760 0.95785 1.01512 1.02017 1.23387 0.96071 0.99305 0.98599 1.20398 0.92599 0.94498 0.90738 1.48249 1.09118 1.62675 1.12366 1.19451 0.95959 0.94656 0.78164 1.21501 1.38679 0.94669 1.02246 0.91966 1.24914 0.94796 0.98311 0.95626 1.69930 1.39605 1.36442 1.06770 0.86544 0.78269 0.85046 0.78305 1.19597 1.20915 1.20750 1.20475 0.82298 0.75990 0.89959 1.90562 1.75736 1.51234 1.27573 1.20516 0.95234 0.95001 0.98052 0.88049 1.21594 0.97951 0.97207 0.98097 1.21533 0.96023 0.99006 0.98703 1.21062 0.97517 0.93781 1.00159 1.22244 0.98043 0.98804 0.98139 0.88561 1.22919 1.02851 1.02810 0.90821 1.21494 0.89773 0.98607 1.04071 0.89055 0.88955 0.88465 0.87974 0.90271 0.89983 0.94619 0.94375 0.92605 0.92518 0.88494 0.91429 0.92002 0.92171 0.92079 0.89805 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.84 14.32 29.01 0.42 -2.42 16 2 C -0.15 -2.59 9.85 -36.03 -0.35 -2.95 16 3 C 0.14 2.66 5.90 -5.20 -0.03 2.63 16 4 N -0.59 -12.57 2.45 -176.44 -0.43 -13.01 16 5 C 0.24 5.56 4.98 -5.19 -0.03 5.53 16 6 C -0.53 -13.37 7.65 -34.44 -0.26 -13.63 16 7 H 0.06 1.60 7.53 -52.48 -0.40 1.21 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -23.98 13.29 55.43 0.74 -23.25 16 10 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.52 11.02 6.59 -10.98 -0.07 10.95 16 15 O -0.57 -12.85 15.15 5.55 0.08 -12.77 16 16 C -0.07 -1.26 2.08 -92.31 -0.19 -1.46 16 17 H 0.10 2.03 5.77 -51.93 -0.30 1.73 16 18 C -0.11 -2.02 4.95 -26.64 -0.13 -2.15 16 19 C -0.12 -1.78 5.93 -26.64 -0.16 -1.94 16 20 C -0.09 -1.18 5.83 -26.94 -0.16 -1.34 16 21 C -0.15 -2.18 6.19 -90.90 -0.56 -2.74 16 22 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 23 C -0.16 -2.44 8.68 -26.75 -0.23 -2.67 16 24 C -0.12 -2.01 5.10 -91.93 -0.47 -2.47 16 25 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 26 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.10 1.39 7.84 -52.49 -0.41 0.97 16 28 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.08 1.47 7.75 -51.93 -0.40 1.07 16 30 H 0.08 1.56 7.26 -51.93 -0.38 1.19 16 31 H 0.04 0.89 8.03 -51.93 -0.42 0.47 16 32 H 0.04 0.93 5.88 -51.93 -0.31 0.62 16 33 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.06 1.03 7.11 -51.93 -0.37 0.66 16 35 H 0.10 2.00 6.00 -51.92 -0.31 1.69 16 36 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.10 1.62 7.25 -51.93 -0.38 1.25 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -27.28 326.88 -8.63 -35.91 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.60 Total: 6.12 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -2.33 Total: -13.05 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.30 Total: -36.25 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.28 -8.63 -35.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597685001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.062 kcal (2) G-P(sol) polarization free energy of solvation -27.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds