Wall clock time and date at job start Mon Mar 30 2020 07:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00126 * 2 1 4 4 N 1.46492 * 109.47441 * 124.06417 * 3 2 1 5 5 C 1.46505 * 120.00223 * 273.81798 * 4 3 2 6 6 C 1.50698 * 109.46687 * 264.85390 * 5 4 3 7 7 H 1.08004 * 120.00325 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99880 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99955 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47057 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46852 * 120.00596 * 10 8 6 13 13 H 1.48499 * 109.46812 * 240.00210 * 10 8 6 14 14 C 1.34780 * 120.00298 * 93.81151 * 4 3 2 15 15 O 1.21287 * 119.99748 * 4.15517 * 14 4 3 16 16 C 1.50700 * 120.00397 * 184.14755 * 14 4 3 17 17 H 1.09002 * 109.26486 * 24.84702 * 16 14 4 18 18 C 1.52869 * 109.24127 * 265.35653 * 16 14 4 19 19 C 1.53299 * 108.59142 * 184.86094 * 18 16 14 20 20 C 1.52881 * 108.58199 * 74.44371 * 19 18 16 21 21 C 1.52717 * 110.15049 * 305.47904 * 20 19 18 22 22 H 1.08997 * 114.90896 * 232.15358 * 21 20 19 23 23 C 1.53654 * 116.02932 * 90.20145 * 21 20 19 24 24 C 1.52065 * 120.52151 * 21.47320 * 21 20 19 25 25 H 1.09002 * 115.30916 * 211.01222 * 24 21 20 26 26 H 1.08001 * 120.00284 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99926 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99968 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46919 * 4.06200 * 3 2 1 30 30 H 1.09002 * 109.46814 * 244.06325 * 3 2 1 31 31 H 1.08993 * 109.46918 * 24.84864 * 5 4 3 32 32 H 1.08998 * 109.47271 * 144.85810 * 5 4 3 33 33 H 0.97000 * 119.99943 * 179.97438 * 9 8 6 34 34 H 1.08995 * 109.62055 * 304.59707 * 18 16 14 35 35 H 1.09010 * 109.61584 * 65.13186 * 18 16 14 36 36 H 1.08995 * 109.61844 * 314.71687 * 19 18 16 37 37 H 1.08997 * 109.77016 * 194.26456 * 19 18 16 38 38 H 1.08998 * 109.35924 * 185.27058 * 20 19 18 39 39 H 1.08999 * 109.24129 * 65.61840 * 20 19 18 40 40 H 1.08999 * 117.53664 * 140.93626 * 23 21 20 41 41 H 1.09006 * 117.59410 * 355.66453 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9777 1.3412 1.1441 5 6 2.5005 1.8068 2.4487 6 6 2.8224 3.2704 2.6081 7 1 3.3318 3.8006 1.8171 8 6 2.4664 3.9325 3.7639 9 7 1.8465 3.2868 4.7274 10 14 2.8661 5.7466 3.9619 11 1 3.5617 6.2359 2.7445 12 1 1.6084 6.5123 4.1545 13 1 3.7453 5.9336 5.1439 14 6 4.2578 0.9460 0.9968 15 8 4.6732 0.6322 -0.0987 16 6 5.1730 0.8942 2.1929 17 1 4.5766 0.7699 3.0969 18 6 5.9589 2.2023 2.2829 19 6 6.9704 2.0869 3.4290 20 6 8.1161 1.1805 2.9782 21 6 7.5675 -0.1608 2.4965 22 1 8.0266 -1.0362 2.9558 23 6 7.2238 -0.2511 1.0016 24 6 6.1195 -0.2874 2.0498 25 1 5.6610 -1.2606 2.2252 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3575 2.1323 0.0728 30 1 2.6345 1.3949 -0.9242 31 1 1.4220 1.6629 2.5135 32 1 2.9911 1.2387 3.2390 33 1 1.5965 3.7526 5.5407 34 1 6.4865 2.3775 1.3454 35 1 5.2746 3.0276 2.4805 36 1 6.4846 1.6548 4.3038 37 1 7.3605 3.0739 3.6773 38 1 8.7953 1.0138 3.8142 39 1 8.6568 1.6631 2.1641 40 1 7.4597 -1.1819 0.4857 41 1 7.3229 0.6558 0.4051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597685001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:42 Heat of formation + Delta-G solvation = -18.281140 kcal Electronic energy + Delta-G solvation = -20871.275284 eV Core-core repulsion = 17944.234926 eV Total energy + Delta-G solvation = -2927.040358 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.50929 -39.45208 -37.02396 -35.24061 -34.10378 -33.66794 -31.91514 -29.36994 -27.40941 -25.63821 -24.87377 -23.46362 -22.41959 -21.12117 -20.07806 -19.16017 -18.44693 -17.80719 -17.49655 -16.85536 -16.30337 -16.09762 -15.55702 -14.86212 -14.80285 -14.50775 -14.29322 -14.07136 -14.00868 -13.58924 -13.43986 -12.99562 -12.94213 -12.74685 -12.55840 -12.28561 -12.20602 -12.08225 -11.98753 -11.66077 -11.63429 -11.22439 -11.03264 -10.65585 -10.50843 -10.49279 -10.08661 -9.45288 -8.18194 -6.30628 1.26938 1.39740 1.43816 1.53376 1.80895 2.36353 2.48698 2.97177 3.12220 3.71222 3.74589 3.86964 4.04375 4.10759 4.14512 4.24578 4.29152 4.37546 4.50479 4.60000 4.67712 4.72728 4.77385 4.79474 4.90993 4.99830 5.01423 5.08527 5.12558 5.26503 5.30498 5.36538 5.39035 5.47814 5.53118 5.63659 5.65172 5.76043 5.94322 6.08750 6.58171 6.84327 7.34043 7.45165 8.87874 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.009520 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.364739 B = 2940.483992 C = 4693.459785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.180 4.180 3 C 0.139 3.861 4 N -0.599 5.599 5 C 0.255 3.745 6 C -0.533 4.533 7 H 0.051 0.949 8 C 0.027 3.973 9 N -0.918 5.918 10 Si 0.948 3.052 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.275 1.275 14 C 0.518 3.482 15 O -0.588 6.588 16 C -0.062 4.062 17 H 0.084 0.916 18 C -0.107 4.107 19 C -0.112 4.112 20 C -0.086 4.086 21 C -0.130 4.130 22 H 0.123 0.877 23 C -0.159 4.159 24 C -0.145 4.145 25 H 0.094 0.906 26 H 0.119 0.881 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.019 0.981 32 H 0.027 0.973 33 H 0.267 0.733 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.656 -5.082 -2.679 8.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.199 4.199 3 C 0.016 3.984 4 N -0.328 5.328 5 C 0.135 3.865 6 C -0.572 4.572 7 H 0.070 0.930 8 C -0.174 4.174 9 N -0.557 5.557 10 Si 0.774 3.226 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.201 1.201 14 C 0.308 3.692 15 O -0.470 6.470 16 C -0.083 4.083 17 H 0.102 0.898 18 C -0.145 4.145 19 C -0.150 4.150 20 C -0.123 4.123 21 C -0.148 4.148 22 H 0.141 0.859 23 C -0.196 4.196 24 C -0.164 4.164 25 H 0.112 0.888 26 H 0.137 0.863 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.773 -5.206 -3.064 9.075 hybrid contribution -0.465 0.931 0.186 1.057 sum 6.308 -4.275 -2.878 8.145 Atomic orbital electron populations 1.24021 0.94979 1.03050 0.98315 1.23186 0.96777 0.97945 1.01969 1.20481 0.92359 0.95941 0.89582 1.48286 1.09769 1.62591 1.12200 1.19075 0.94585 0.93860 0.79006 1.21573 1.38274 0.95359 1.01981 0.93030 1.25549 0.94651 1.01871 0.95325 1.70013 1.40518 1.37929 1.07241 0.85648 0.78077 0.80631 0.78241 1.19575 1.20629 1.20070 1.20932 0.82373 0.75390 0.90504 1.90536 1.75950 1.52109 1.28390 1.20448 0.95259 0.96515 0.96029 0.89803 1.21511 0.97998 0.95748 0.99201 1.21520 0.95959 1.00360 0.97120 1.21105 0.96960 0.92808 1.01442 1.22406 0.95413 1.00259 0.96758 0.85876 1.22906 1.02325 1.02696 0.91637 1.21492 0.90754 0.97598 1.06526 0.88788 0.86291 0.87906 0.88268 0.90403 0.90674 0.96299 0.95499 0.92387 0.92890 0.91456 0.92074 0.90812 0.89335 0.91398 0.88502 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.64 14.32 67.78 0.97 -3.67 16 2 C -0.18 -6.01 9.85 25.65 0.25 -5.76 16 3 C 0.14 5.37 5.90 85.63 0.50 5.88 16 4 N -0.60 -26.17 2.45 -830.51 -2.04 -28.21 16 5 C 0.26 12.34 4.98 85.63 0.43 12.77 16 6 C -0.53 -27.36 7.65 25.60 0.20 -27.17 16 7 H 0.05 2.72 7.53 -2.91 -0.02 2.70 16 8 C 0.03 1.37 5.46 84.66 0.46 1.83 16 9 N -0.92 -49.87 13.29 21.45 0.28 -49.59 16 10 Si 0.95 41.32 29.54 68.60 2.03 43.35 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 14 C 0.52 22.43 6.59 87.66 0.58 23.01 16 15 O -0.59 -27.07 15.15 -3.05 -0.05 -27.12 16 16 C -0.06 -2.36 2.08 -11.89 -0.02 -2.39 16 17 H 0.08 3.49 5.77 -2.39 -0.01 3.47 16 18 C -0.11 -3.93 4.95 30.65 0.15 -3.78 16 19 C -0.11 -3.32 5.93 30.65 0.18 -3.14 16 20 C -0.09 -2.07 5.83 30.46 0.18 -1.89 16 21 C -0.13 -3.35 6.19 -10.98 -0.07 -3.42 16 22 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 23 C -0.16 -4.72 8.68 30.58 0.27 -4.46 16 24 C -0.15 -4.72 5.10 -11.64 -0.06 -4.78 16 25 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 26 H 0.12 2.71 8.06 -2.91 -0.02 2.69 16 27 H 0.10 2.77 7.84 -2.91 -0.02 2.75 16 28 H 0.10 3.37 8.06 -2.91 -0.02 3.34 16 29 H 0.08 2.96 7.75 -2.39 -0.02 2.94 16 30 H 0.08 2.96 7.26 -2.39 -0.02 2.94 16 31 H 0.02 0.97 8.03 -2.39 -0.02 0.95 16 32 H 0.03 1.37 5.88 -2.39 -0.01 1.36 16 33 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 34 H 0.05 1.95 7.11 -2.39 -0.02 1.94 16 35 H 0.07 2.86 6.00 -2.38 -0.01 2.84 16 36 H 0.06 1.89 8.04 -2.39 -0.02 1.87 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 1.58 8.06 -2.39 -0.02 1.57 16 40 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.08 2.64 7.25 -2.38 -0.02 2.62 16 Total: -1.00 -58.39 326.88 5.23 -53.16 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.99 Total: 25.38 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 4.01 Total: -16.96 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -1.75 Total: -77.80 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.05 Total: -27.12 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -58.39 5.23 -53.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597685001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.874 kcal (2) G-P(sol) polarization free energy of solvation -58.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds