Wall clock time and date at job start Mon Mar 30 2020 07:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00172 * 2 1 4 4 N 1.46500 * 109.47068 * 124.15114 * 3 2 1 5 5 C 1.46501 * 120.00284 * 273.64801 * 4 3 2 6 6 C 1.50701 * 109.47166 * 264.36801 * 5 4 3 7 7 H 1.08002 * 119.99919 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99869 * 179.97438 * 6 5 4 9 9 N 1.31522 * 120.00056 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 120.00201 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.47331 * 90.00107 * 10 8 6 12 12 H 1.48506 * 109.47196 * 209.99928 * 10 8 6 13 13 H 1.48500 * 109.47294 * 329.99944 * 10 8 6 14 14 C 1.34783 * 120.00023 * 93.64866 * 4 3 2 15 15 O 1.21282 * 119.99738 * 4.16000 * 14 4 3 16 16 C 1.50692 * 120.00100 * 184.15562 * 14 4 3 17 17 H 1.09003 * 109.24340 * 24.24659 * 16 14 4 18 18 C 1.52874 * 109.36073 * 264.59058 * 16 14 4 19 19 C 1.53307 * 108.58392 * 185.26914 * 18 16 14 20 20 C 1.52869 * 108.58641 * 74.44611 * 19 18 16 21 21 C 1.52080 * 110.51410 * 305.10643 * 20 19 18 22 22 H 1.08997 * 114.63418 * 165.62884 * 21 20 19 23 23 C 1.52300 * 119.83892 * 310.45252 * 21 20 19 24 24 C 1.52064 * 120.01681 * 21.70824 * 21 20 19 25 25 H 1.09006 * 117.25570 * 144.43443 * 24 21 20 26 26 H 1.08003 * 120.00287 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99971 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99349 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47395 * 4.15043 * 3 2 1 30 30 H 1.08997 * 109.47105 * 244.15214 * 3 2 1 31 31 H 1.09001 * 109.46858 * 24.36634 * 5 4 3 32 32 H 1.09000 * 109.47299 * 144.36652 * 5 4 3 33 33 H 0.96997 * 120.00589 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.61979 * 305.00062 * 18 16 14 35 35 H 1.09006 * 109.61623 * 65.54239 * 18 16 14 36 36 H 1.09001 * 109.61342 * 194.17395 * 19 18 16 37 37 H 1.09002 * 109.61361 * 314.53404 * 19 18 16 38 38 H 1.08993 * 109.27164 * 65.37701 * 20 19 18 39 39 H 1.09003 * 109.26587 * 184.87901 * 20 19 18 40 40 H 1.09003 * 117.53637 * 217.19080 * 23 21 20 41 41 H 1.08999 * 117.54093 * 2.37419 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9792 1.3402 1.1430 5 6 2.5047 1.8083 2.4477 6 6 2.8408 3.2683 2.6102 7 1 3.3566 3.7948 1.8208 8 6 2.4897 3.9319 3.7666 9 7 2.7835 5.2060 3.9087 10 14 1.5968 3.0215 5.1315 11 1 2.5897 2.4328 6.0659 12 1 0.7236 3.9690 5.8698 13 1 0.7673 1.9388 4.5442 14 6 4.2582 0.9419 0.9944 15 8 4.6716 0.6262 -0.1012 16 6 5.1746 0.8891 2.1895 17 1 4.5781 0.7776 3.0950 18 6 5.9790 2.1866 2.2691 19 6 6.9967 2.0614 3.4088 20 6 8.1267 1.1379 2.9537 21 6 7.5686 -0.1984 2.4894 22 1 8.2709 -0.8132 1.9265 23 6 6.5791 -0.9527 3.3677 24 6 6.1158 -0.3058 2.0532 25 1 5.8899 -0.9874 1.2331 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9354 0.0004 29 1 1.3576 2.1322 0.0744 30 1 2.6332 1.3956 -0.9248 31 1 1.4247 1.6748 2.5107 32 1 2.9885 1.2339 3.2377 33 1 2.5362 5.6730 4.7221 34 1 6.5026 2.3511 1.3274 35 1 5.3075 3.0219 2.4683 36 1 7.4015 3.0449 3.6476 37 1 6.5101 1.6422 4.2895 38 1 8.6661 1.6077 2.1314 39 1 8.8121 0.9715 3.7849 40 1 6.6560 -2.0397 3.3946 41 1 6.2699 -0.4796 4.2997 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597685003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:45 Heat of formation + Delta-G solvation = -2.600302 kcal Electronic energy + Delta-G solvation = -20863.729327 eV Core-core repulsion = 17937.368942 eV Total energy + Delta-G solvation = -2926.360386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.03671 -38.19468 -35.51334 -33.63829 -32.59555 -32.19880 -30.63208 -28.15146 -26.01425 -24.36439 -22.60476 -22.23838 -21.09068 -19.81565 -18.56328 -17.91735 -17.01032 -16.48246 -16.00534 -15.31233 -14.71207 -14.26848 -14.00149 -13.72335 -13.50952 -13.35795 -12.89334 -12.68216 -12.46501 -12.18179 -11.93449 -11.60028 -11.44667 -11.22819 -11.02975 -10.96495 -10.76155 -10.67187 -10.55513 -10.26607 -9.88996 -9.69231 -9.54036 -9.32572 -9.25182 -8.81993 -8.68326 -7.77297 -6.23012 -4.23698 2.47029 3.15952 3.24720 3.26409 3.36378 3.93556 4.02239 4.25410 4.90820 4.99157 5.07389 5.11200 5.27767 5.33359 5.39550 5.46339 5.60937 5.63094 5.79049 5.86064 5.93823 5.95277 6.03352 6.06253 6.14245 6.28184 6.31721 6.36401 6.42899 6.45972 6.49607 6.63632 6.70746 6.83224 6.85548 6.95428 7.05181 7.37647 7.42820 8.14242 8.39613 8.81109 8.96263 9.36560 10.89108 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.009328 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.416735 B = 3000.942073 C = 4370.560524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C 0.140 3.860 4 N -0.588 5.588 5 C 0.208 3.792 6 C -0.537 4.537 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.889 5.889 10 Si 0.867 3.133 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.528 3.472 15 O -0.570 6.570 16 C -0.067 4.067 17 H 0.096 0.904 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.088 4.088 21 C -0.136 4.136 22 H 0.093 0.907 23 C -0.189 4.189 24 C -0.126 4.126 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -9.503 -0.714 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.175 4.175 3 C 0.017 3.983 4 N -0.318 5.318 5 C 0.087 3.913 6 C -0.575 4.575 7 H 0.098 0.902 8 C -0.125 4.125 9 N -0.526 5.526 10 Si 0.693 3.307 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.317 3.683 15 O -0.450 6.450 16 C -0.088 4.088 17 H 0.114 0.886 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.125 4.125 21 C -0.154 4.154 22 H 0.111 0.889 23 C -0.226 4.226 24 C -0.145 4.145 25 H 0.123 0.877 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.597 -9.487 -1.140 10.210 hybrid contribution -0.639 -0.425 0.920 1.198 sum 2.958 -9.912 -0.220 10.346 Atomic orbital electron populations 1.23790 0.95782 1.01611 1.01926 1.23410 0.96095 0.99335 0.98676 1.20445 0.92610 0.94570 0.90689 1.47918 1.09320 1.62789 1.11750 1.19849 0.95616 0.95871 0.79992 1.21350 1.39285 0.92875 1.03992 0.90152 1.24835 0.95107 0.94659 0.97908 1.69886 1.46334 1.08917 1.27488 0.86993 0.80612 0.80247 0.82838 1.19817 1.20920 1.18877 1.20448 0.82101 0.75732 0.90025 1.90574 1.75577 1.51316 1.27571 1.20719 0.95046 0.95499 0.97566 0.88637 1.21589 0.97849 0.96997 0.98323 1.21555 0.96119 0.99226 0.98516 1.20868 0.97775 0.93512 1.00334 1.21786 0.92329 0.98420 1.02861 0.88856 1.23159 1.05223 0.98816 0.95364 1.22061 0.95484 0.99117 0.97832 0.87691 0.88872 0.88379 0.87853 0.89963 0.89610 0.94765 0.95269 0.92378 0.92189 0.87914 0.91545 0.91886 0.91686 0.92071 0.89349 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 14.32 29.01 0.42 -2.25 16 2 C -0.16 -2.48 9.85 -36.03 -0.35 -2.84 16 3 C 0.14 2.56 5.89 -5.20 -0.03 2.53 16 4 N -0.59 -12.13 2.45 -176.44 -0.43 -12.56 16 5 C 0.21 4.55 4.04 -5.19 -0.02 4.53 16 6 C -0.54 -13.63 8.25 -34.44 -0.28 -13.92 16 7 H 0.08 2.29 7.76 -52.49 -0.41 1.88 16 8 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.89 -25.07 13.96 55.43 0.77 -24.29 16 10 Si 0.87 19.49 27.47 -169.99 -4.67 14.82 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 14 C 0.53 11.00 6.55 -10.99 -0.07 10.93 16 15 O -0.57 -12.92 15.62 5.56 0.09 -12.84 16 16 C -0.07 -1.25 1.95 -91.99 -0.18 -1.43 16 17 H 0.10 1.81 5.67 -51.93 -0.29 1.51 16 18 C -0.11 -2.05 5.18 -26.64 -0.14 -2.19 16 19 C -0.12 -1.82 5.70 -26.64 -0.15 -1.97 16 20 C -0.09 -1.18 5.93 -27.27 -0.16 -1.35 16 21 C -0.14 -1.90 6.00 -91.92 -0.55 -2.45 16 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 23 C -0.19 -2.58 9.66 -26.75 -0.26 -2.84 16 24 C -0.13 -2.06 5.35 -90.90 -0.49 -2.55 16 25 H 0.11 1.81 7.47 -51.93 -0.39 1.42 16 26 H 0.09 1.11 8.06 -52.48 -0.42 0.68 16 27 H 0.10 1.31 7.84 -52.49 -0.41 0.89 16 28 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 29 H 0.08 1.48 7.75 -51.93 -0.40 1.08 16 30 H 0.09 1.61 7.27 -51.93 -0.38 1.23 16 31 H 0.03 0.75 7.08 -51.93 -0.37 0.38 16 32 H 0.03 0.63 5.32 -51.93 -0.28 0.35 16 33 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 34 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 35 H 0.10 2.24 6.06 -51.93 -0.31 1.92 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.99 7.12 -51.93 -0.37 0.62 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.30 7.27 -51.93 -0.38 0.93 16 LS Contribution 324.19 15.07 4.89 4.89 Total: -1.00 -28.23 324.19 -8.26 -36.49 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.53 Total: 7.32 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -2.37 Total: -13.82 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.34 Total: -36.86 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.67 Total: 14.82 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.23 -8.26 -36.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597685003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.888 kcal (2) G-P(sol) polarization free energy of solvation -28.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds