Wall clock time and date at job start Mon Mar 30 2020 06:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47218 * 2 1 4 4 C 1.35889 * 116.99972 * 180.02562 * 3 2 1 5 5 C 1.38619 * 120.02141 * 359.97438 * 4 3 2 6 6 C 1.38783 * 119.87513 * 179.72640 * 5 4 3 7 7 N 1.39665 * 120.04887 * 180.02562 * 6 5 4 8 8 C 1.46498 * 120.00605 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46890 * 35.00140 * 8 7 6 10 10 C 1.50692 * 109.47424 * 155.00026 * 8 7 6 11 11 H 1.08003 * 120.00217 * 35.00407 * 10 8 7 12 12 C 1.37883 * 120.00062 * 215.00644 * 10 8 7 13 13 N 1.31516 * 119.99850 * 184.82959 * 12 10 8 14 14 Si 1.86791 * 120.00128 * 4.83066 * 12 10 8 15 15 H 1.48497 * 109.47525 * 84.85779 * 14 12 10 16 16 H 1.48502 * 109.47127 * 204.86304 * 14 12 10 17 17 H 1.48510 * 109.47088 * 324.85750 * 14 12 10 18 18 C 1.53004 * 109.47242 * 275.00378 * 8 7 6 19 19 C 1.52999 * 109.46966 * 65.72452 * 18 8 7 20 20 C 1.38973 * 119.90812 * 359.97438 * 6 5 4 21 21 C 1.38116 * 120.03829 * 359.97438 * 20 6 5 22 22 C 1.38223 * 120.12176 * 0.04087 * 21 20 6 23 23 C 1.50700 * 119.94844 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.47579 * 300.00556 * 1 2 3 25 25 H 1.09008 * 109.47340 * 60.00240 * 1 2 3 26 26 H 1.08994 * 109.47545 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46929 * 239.99610 * 2 1 3 28 28 H 1.09002 * 109.46690 * 119.99594 * 2 1 3 29 29 H 1.08001 * 120.06036 * 359.71130 * 5 4 3 30 30 H 0.97008 * 119.99750 * 0.02562 * 7 6 5 31 31 H 0.97002 * 119.99994 * 180.02562 * 13 12 10 32 32 H 1.09005 * 109.46808 * 185.72526 * 18 8 7 33 33 H 1.08997 * 109.46664 * 305.72195 * 18 8 7 34 34 H 1.09002 * 109.47328 * 60.00012 * 19 18 8 35 35 H 1.09002 * 109.46685 * 179.97438 * 19 18 8 36 36 H 1.08996 * 109.47644 * 299.99816 * 19 18 8 37 37 H 1.08007 * 119.98452 * 179.97438 * 20 6 5 38 38 H 1.07992 * 119.93812 * 180.02562 * 21 20 6 39 39 H 1.08997 * 109.47271 * 269.97742 * 23 22 21 40 40 H 1.09004 * 109.47428 * 29.98021 * 23 22 21 41 41 H 1.08996 * 109.46942 * 149.97844 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5253 -0.0005 5 6 4.1983 0.4263 -0.0005 6 6 5.5737 0.6116 -0.0068 7 7 6.4282 -0.4932 -0.0074 8 6 7.8799 -0.2965 -0.0146 9 1 8.1296 0.5883 0.5711 10 6 8.5534 -1.5031 0.5864 11 1 8.1388 -2.4878 0.4282 12 6 9.6989 -1.3502 1.3385 13 7 10.3397 -2.4090 1.7832 14 14 10.3405 0.3608 1.7256 15 1 9.6477 0.8890 2.9281 16 1 11.8013 0.2948 1.9848 17 1 10.0829 1.2590 0.5713 18 6 8.3619 -0.1077 -1.4544 19 6 7.7899 1.1951 -2.0170 20 6 6.0996 1.8979 -0.0137 21 6 5.2544 2.9903 -0.0147 22 6 3.8844 2.8074 -0.0081 23 6 2.9658 4.0021 -0.0087 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.7869 -0.5723 0.0046 30 1 6.0604 -1.3908 -0.0037 31 1 11.1454 -2.3015 2.3126 32 1 9.4509 -0.0631 -1.4701 33 1 8.0238 -0.9459 -2.0635 34 1 8.1280 2.0334 -1.4078 35 1 8.1336 1.3298 -3.0426 36 1 6.7010 1.1506 -2.0013 37 1 7.1698 2.0436 -0.0182 38 1 5.6648 3.9892 -0.0205 39 1 2.7485 4.2939 1.0187 40 1 3.4478 4.8308 -0.5275 41 1 2.0368 3.7459 -0.5179 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689680620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:48 Heat of formation + Delta-G solvation = -25.054165 kcal Electronic energy + Delta-G solvation = -20177.288222 eV Core-core repulsion = 17249.954164 eV Total energy + Delta-G solvation = -2927.334058 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.96529 -38.02780 -35.87516 -33.07617 -32.01158 -31.67242 -30.40664 -29.15479 -27.58176 -24.97807 -23.87118 -22.73762 -21.85514 -20.80062 -19.46674 -17.93303 -17.02879 -16.06787 -15.98400 -15.32198 -14.92138 -14.54813 -13.92992 -13.80619 -13.40141 -13.31642 -13.11123 -12.80494 -12.60744 -12.57643 -12.10571 -11.97207 -11.78201 -11.65674 -11.52691 -11.10849 -10.89364 -10.84927 -10.62186 -10.57221 -10.51550 -9.92859 -9.87039 -9.24301 -9.04137 -8.69609 -7.92209 -6.54209 -6.27845 -4.31125 1.92666 2.14720 3.18817 3.26931 3.28382 3.41696 4.24896 4.30642 4.33334 4.90862 4.97618 5.10593 5.22898 5.27116 5.44333 5.47390 5.62927 5.72623 5.74197 5.84612 5.95150 5.95721 5.97870 6.01833 6.04846 6.13892 6.15562 6.42143 6.43645 6.64483 6.69816 6.83297 6.91368 6.93662 7.05363 7.20461 7.23553 7.41972 7.74748 8.01901 8.39737 8.62648 8.76982 9.33401 10.84447 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023779 B = 0.005339 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.233762 B = 5242.798840 C = 5731.596619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.172 3.828 5 C -0.301 4.301 6 C 0.266 3.734 7 N -0.715 5.715 8 C 0.241 3.759 9 H 0.042 0.958 10 C -0.529 4.529 11 H 0.077 0.923 12 C 0.080 3.920 13 N -0.889 5.889 14 Si 0.873 3.127 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.261 1.261 18 C -0.130 4.130 19 C -0.159 4.159 20 C -0.236 4.236 21 C -0.040 4.040 22 C -0.202 4.202 23 C -0.087 4.087 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.393 0.607 31 H 0.268 0.732 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.925 8.131 -4.340 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.126 3.874 5 C -0.325 4.325 6 C 0.156 3.844 7 N -0.337 5.337 8 C 0.138 3.862 9 H 0.060 0.940 10 C -0.567 4.567 11 H 0.095 0.905 12 C -0.124 4.124 13 N -0.525 5.525 14 Si 0.699 3.301 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.186 1.186 18 C -0.169 4.169 19 C -0.216 4.216 20 C -0.258 4.258 21 C -0.059 4.059 22 C -0.205 4.205 23 C -0.143 4.143 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.137 0.863 30 H 0.227 0.773 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.655 8.195 -4.228 16.477 hybrid contribution 0.522 0.049 0.306 0.608 sum -13.132 8.244 -3.921 15.993 Atomic orbital electron populations 1.21761 0.93276 1.02511 1.03173 1.22686 0.95223 0.82663 1.01470 1.85993 1.19803 1.28538 1.88821 1.18383 0.81139 0.93202 0.94680 1.20476 0.92509 0.97788 1.21747 1.17740 0.89021 0.88639 0.89027 1.45674 1.06128 1.04984 1.76946 1.19139 0.76819 0.97785 0.92486 0.94036 1.20991 1.09932 0.93253 1.32535 0.90487 1.24951 0.96095 0.96856 0.94490 1.69882 1.18138 1.29164 1.35322 0.86919 0.78291 0.85072 0.79780 1.19745 1.21086 1.18563 1.22166 1.00190 0.95799 0.98755 1.22274 1.01596 0.98606 0.99127 1.20909 1.00480 0.90943 1.13513 1.20488 0.91509 0.97948 0.95977 1.18749 0.93876 0.91883 1.15958 1.20356 0.98168 0.94896 1.00930 0.91730 0.91779 0.90694 0.92255 0.92168 0.86337 0.77326 0.92215 0.92138 0.92771 0.93315 0.94576 0.92066 0.85351 0.86381 0.92881 0.92805 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.93 16 2 C 0.06 0.64 5.46 37.16 0.20 0.84 16 3 O -0.32 -4.68 9.17 -19.39 -0.18 -4.85 16 4 C 0.17 2.82 6.66 -39.24 -0.26 2.56 16 5 C -0.30 -5.12 8.88 -39.24 -0.35 -5.47 16 6 C 0.27 4.98 5.52 -83.82 -0.46 4.52 16 7 N -0.72 -14.37 5.18 -53.31 -0.28 -14.65 16 8 C 0.24 5.41 1.86 -69.09 -0.13 5.28 16 9 H 0.04 0.97 3.64 -51.93 -0.19 0.78 16 10 C -0.53 -14.01 9.05 -34.44 -0.31 -14.32 16 11 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 12 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 13 N -0.89 -25.96 13.96 55.43 0.77 -25.18 16 14 Si 0.87 20.62 26.99 -169.99 -4.59 16.03 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.26 -5.83 6.82 56.52 0.39 -5.45 16 18 C -0.13 -2.67 5.59 -26.73 -0.15 -2.81 16 19 C -0.16 -2.83 8.23 37.16 0.31 -2.53 16 20 C -0.24 -4.28 6.71 -39.35 -0.26 -4.54 16 21 C -0.04 -0.65 9.69 -39.63 -0.38 -1.03 16 22 C -0.20 -3.20 5.90 -104.43 -0.62 -3.82 16 23 C -0.09 -1.13 9.79 36.01 0.35 -0.78 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.66 7.66 -51.93 -0.40 0.27 16 28 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 29 H 0.12 1.83 6.30 -52.49 -0.33 1.50 16 30 H 0.39 7.55 8.61 -40.82 -0.35 7.20 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.85 6.40 -51.93 -0.33 0.52 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 1.10 5.36 -51.93 -0.28 0.82 16 37 H 0.13 2.42 3.99 -52.48 -0.21 2.21 16 38 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 41 H 0.06 0.76 7.52 -51.93 -0.39 0.36 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -28.67 322.03 -7.45 -36.12 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.25 Total: 8.60 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -1.78 Total: -20.92 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.50 Total: -39.83 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.18 Total: -4.85 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.59 Total: 16.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.67 -7.45 -36.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689680620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.067 kcal (2) G-P(sol) polarization free energy of solvation -28.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds