Wall clock time and date at job start Mon Mar 30 2020 06:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47218 * 2 1 4 4 C 1.35889 * 116.99972 * 180.02562 * 3 2 1 5 5 C 1.38619 * 120.02141 * 359.97438 * 4 3 2 6 6 C 1.38783 * 119.87513 * 179.72640 * 5 4 3 7 7 N 1.39665 * 120.04887 * 180.02562 * 6 5 4 8 8 C 1.46498 * 120.00605 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46890 * 35.00140 * 8 7 6 10 10 C 1.50692 * 109.47424 * 155.00026 * 8 7 6 11 11 H 1.08003 * 120.00217 * 35.00407 * 10 8 7 12 12 C 1.37883 * 120.00062 * 215.00644 * 10 8 7 13 13 N 1.31516 * 119.99850 * 184.82959 * 12 10 8 14 14 Si 1.86791 * 120.00128 * 4.83066 * 12 10 8 15 15 H 1.48497 * 109.47525 * 84.85779 * 14 12 10 16 16 H 1.48502 * 109.47127 * 204.86304 * 14 12 10 17 17 H 1.48510 * 109.47088 * 324.85750 * 14 12 10 18 18 C 1.53004 * 109.47242 * 275.00378 * 8 7 6 19 19 C 1.52999 * 109.46966 * 65.72452 * 18 8 7 20 20 C 1.38973 * 119.90812 * 359.97438 * 6 5 4 21 21 C 1.38116 * 120.03829 * 359.97438 * 20 6 5 22 22 C 1.38223 * 120.12176 * 0.04087 * 21 20 6 23 23 C 1.50700 * 119.94844 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.47579 * 300.00556 * 1 2 3 25 25 H 1.09008 * 109.47340 * 60.00240 * 1 2 3 26 26 H 1.08994 * 109.47545 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46929 * 239.99610 * 2 1 3 28 28 H 1.09002 * 109.46690 * 119.99594 * 2 1 3 29 29 H 1.08001 * 120.06036 * 359.71130 * 5 4 3 30 30 H 0.97008 * 119.99750 * 0.02562 * 7 6 5 31 31 H 0.97002 * 119.99994 * 180.02562 * 13 12 10 32 32 H 1.09005 * 109.46808 * 185.72526 * 18 8 7 33 33 H 1.08997 * 109.46664 * 305.72195 * 18 8 7 34 34 H 1.09002 * 109.47328 * 60.00012 * 19 18 8 35 35 H 1.09002 * 109.46685 * 179.97438 * 19 18 8 36 36 H 1.08996 * 109.47644 * 299.99816 * 19 18 8 37 37 H 1.08007 * 119.98452 * 179.97438 * 20 6 5 38 38 H 1.07992 * 119.93812 * 180.02562 * 21 20 6 39 39 H 1.08997 * 109.47271 * 269.97742 * 23 22 21 40 40 H 1.09004 * 109.47428 * 29.98021 * 23 22 21 41 41 H 1.08996 * 109.46942 * 149.97844 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5253 -0.0005 5 6 4.1983 0.4263 -0.0005 6 6 5.5737 0.6116 -0.0068 7 7 6.4282 -0.4932 -0.0074 8 6 7.8799 -0.2965 -0.0146 9 1 8.1296 0.5883 0.5711 10 6 8.5534 -1.5031 0.5864 11 1 8.1388 -2.4878 0.4282 12 6 9.6989 -1.3502 1.3385 13 7 10.3397 -2.4090 1.7832 14 14 10.3405 0.3608 1.7256 15 1 9.6477 0.8890 2.9281 16 1 11.8013 0.2948 1.9848 17 1 10.0829 1.2590 0.5713 18 6 8.3619 -0.1077 -1.4544 19 6 7.7899 1.1951 -2.0170 20 6 6.0996 1.8979 -0.0137 21 6 5.2544 2.9903 -0.0147 22 6 3.8844 2.8074 -0.0081 23 6 2.9658 4.0021 -0.0087 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.7869 -0.5723 0.0046 30 1 6.0604 -1.3908 -0.0037 31 1 11.1454 -2.3015 2.3126 32 1 9.4509 -0.0631 -1.4701 33 1 8.0238 -0.9459 -2.0635 34 1 8.1280 2.0334 -1.4078 35 1 8.1336 1.3298 -3.0426 36 1 6.7010 1.1506 -2.0013 37 1 7.1698 2.0436 -0.0182 38 1 5.6648 3.9892 -0.0205 39 1 2.7485 4.2939 1.0187 40 1 3.4478 4.8308 -0.5275 41 1 2.0368 3.7459 -0.5179 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689680620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:48 Heat of formation + Delta-G solvation = -41.508190 kcal Electronic energy + Delta-G solvation = -20178.001722 eV Core-core repulsion = 17249.954164 eV Total energy + Delta-G solvation = -2928.047558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.21257 -39.36481 -37.30210 -34.79545 -33.72454 -32.63276 -31.72473 -30.41575 -29.27866 -26.33581 -24.92220 -24.45367 -23.14866 -22.03597 -20.97985 -19.60191 -18.57412 -17.56464 -17.00168 -16.74855 -16.55059 -15.87859 -15.51169 -15.23397 -14.79940 -14.52919 -14.38826 -14.32524 -13.75526 -13.59979 -13.50313 -13.34861 -13.05634 -12.89224 -12.82287 -12.60542 -12.42737 -12.30269 -12.00842 -11.86542 -11.76449 -11.69704 -11.40255 -11.11455 -10.82850 -10.36020 -9.21309 -8.38577 -7.97322 -6.45664 0.63294 0.82720 1.32014 1.34045 1.43154 2.27610 2.35535 2.72074 3.01517 3.10641 4.00324 4.07618 4.16308 4.17756 4.32346 4.39671 4.43023 4.47546 4.50412 4.52240 4.69924 4.75668 4.86431 4.92815 4.96166 4.96722 5.00118 5.15550 5.20460 5.23033 5.28868 5.34310 5.40119 5.52754 5.60218 5.64480 5.78968 5.93201 6.08167 6.55716 6.58140 6.73605 7.09417 7.24263 8.77460 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023779 B = 0.005339 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.233762 B = 5242.798840 C = 5731.596619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 O -0.322 6.322 4 C 0.164 3.836 5 C -0.303 4.303 6 C 0.245 3.755 7 N -0.725 5.725 8 C 0.251 3.749 9 H 0.039 0.961 10 C -0.531 4.531 11 H 0.040 0.960 12 C 0.025 3.975 13 N -0.938 5.938 14 Si 0.932 3.068 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.238 1.238 18 C -0.128 4.128 19 C -0.148 4.148 20 C -0.249 4.249 21 C -0.038 4.038 22 C -0.203 4.203 23 C -0.084 4.084 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.127 0.873 30 H 0.392 0.608 31 H 0.269 0.731 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.122 0.878 38 H 0.147 0.853 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.432 10.846 -4.951 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 O -0.236 6.236 4 C 0.118 3.882 5 C -0.327 4.327 6 C 0.138 3.862 7 N -0.349 5.349 8 C 0.146 3.854 9 H 0.056 0.944 10 C -0.569 4.569 11 H 0.058 0.942 12 C -0.174 4.174 13 N -0.577 5.577 14 Si 0.755 3.245 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.161 1.161 18 C -0.167 4.167 19 C -0.205 4.205 20 C -0.272 4.272 21 C -0.057 4.057 22 C -0.206 4.206 23 C -0.141 4.141 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.145 0.855 30 H 0.226 0.774 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.139 0.861 38 H 0.165 0.835 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.211 10.935 -4.857 19.353 hybrid contribution 0.804 -0.847 0.479 1.262 sum -14.407 10.088 -4.378 18.125 Atomic orbital electron populations 1.21774 0.90932 1.04011 1.03382 1.22965 0.97087 0.81358 1.01510 1.86004 1.18725 1.30372 1.88488 1.18583 0.81914 0.93354 0.94376 1.20607 0.92063 0.98733 1.21327 1.17891 0.89420 0.88399 0.90504 1.45337 1.05271 1.05558 1.78767 1.18883 0.77938 0.95369 0.93173 0.94373 1.21258 1.09988 0.93402 1.32282 0.94210 1.25773 0.96463 1.00704 0.94507 1.70019 1.19073 1.31587 1.37000 0.85967 0.77625 0.80649 0.80240 1.19555 1.20762 1.16136 1.22060 0.99617 0.97445 0.97585 1.22149 1.01275 0.96842 1.00203 1.20978 1.00494 0.91279 1.14453 1.20796 0.91408 0.98670 0.94777 1.19212 0.94458 0.92755 1.14145 1.20397 0.97694 0.94234 1.01782 0.91611 0.91441 0.88572 0.92032 0.92343 0.85533 0.77417 0.92151 0.93086 0.93344 0.92648 0.92534 0.92269 0.86058 0.83529 0.92046 0.90782 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.05 0.98 5.46 71.98 0.39 1.38 16 3 O -0.32 -8.86 9.17 -92.30 -0.85 -9.70 16 4 C 0.16 5.08 6.66 22.49 0.15 5.23 16 5 C -0.30 -10.04 8.88 22.49 0.20 -9.84 16 6 C 0.25 9.01 5.52 38.20 0.21 9.22 16 7 N -0.73 -29.40 5.18 -322.58 -1.67 -31.08 16 8 C 0.25 11.28 1.86 44.24 0.08 11.36 16 9 H 0.04 1.75 3.64 -2.39 -0.01 1.74 16 10 C -0.53 -29.03 9.05 25.60 0.23 -28.80 16 11 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 12 C 0.03 1.40 5.47 84.66 0.46 1.87 16 13 N -0.94 -56.64 13.96 21.45 0.30 -56.35 16 14 Si 0.93 42.51 26.99 68.60 1.85 44.36 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.24 -9.89 6.82 99.48 0.68 -9.21 16 18 C -0.13 -5.17 5.59 30.60 0.17 -5.00 16 19 C -0.15 -4.95 8.23 71.98 0.59 -4.36 16 20 C -0.25 -8.59 6.71 22.42 0.15 -8.44 16 21 C -0.04 -1.10 9.69 22.24 0.22 -0.89 16 22 C -0.20 -5.88 5.90 -19.74 -0.12 -5.99 16 23 C -0.08 -1.90 9.79 71.24 0.70 -1.20 16 24 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.29 7.66 -2.39 -0.02 1.28 16 28 H 0.06 1.27 7.66 -2.39 -0.02 1.26 16 29 H 0.13 3.85 6.30 -2.91 -0.02 3.83 16 30 H 0.39 15.59 8.61 -92.70 -0.80 14.79 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.78 6.40 -2.39 -0.02 1.76 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 2.02 5.36 -2.39 -0.01 2.01 16 37 H 0.12 4.32 3.99 -2.91 -0.01 4.31 16 38 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 41 H 0.06 1.34 7.52 -2.39 -0.02 1.32 16 Total: -1.00 -62.52 322.03 4.01 -58.51 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.20 Total: 31.20 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 4.18 Total: -36.94 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -1.37 Total: -87.42 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.85 Total: -9.70 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.85 Total: 44.36 kcal Total: -62.52 4.01 -58.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689680620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.999 kcal (2) G-P(sol) polarization free energy of solvation -62.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds