Wall clock time and date at job start Mon Mar 30 2020 07:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46956 * 2 1 4 4 O 1.42895 * 109.47254 * 120.00095 * 2 1 3 5 5 C 1.42901 * 114.00279 * 89.99741 * 4 2 1 6 6 C 1.52996 * 109.47010 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.46916 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.47036 * 179.97438 * 7 6 5 9 9 C 1.39685 * 119.99856 * 179.97438 * 8 7 6 10 10 C 1.39337 * 119.95014 * 359.97438 * 9 8 7 11 11 C 1.38475 * 120.42035 * 180.02562 * 10 9 8 12 12 C 1.37684 * 120.32918 * 359.97438 * 11 10 9 13 13 C 1.40751 * 119.89421 * 0.03199 * 12 11 10 14 14 C 1.41406 * 120.20989 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99858 * 24.36605 * 14 13 12 16 16 C 1.39935 * 119.99740 * 204.36617 * 14 13 12 17 17 N 1.30827 * 120.00201 * 17.83614 * 16 14 13 18 18 Si 1.86796 * 119.99610 * 197.83636 * 16 14 13 19 19 H 1.48497 * 109.47206 * 89.99987 * 18 16 14 20 20 H 1.48507 * 109.47251 * 209.99859 * 18 16 14 21 21 H 1.48501 * 109.47426 * 329.99960 * 18 16 14 22 22 C 1.38280 * 119.95177 * 179.97438 * 9 8 7 23 23 H 1.09007 * 109.47216 * 300.00124 * 1 2 3 24 24 H 1.08999 * 109.47529 * 60.00008 * 1 2 3 25 25 H 1.09005 * 109.47241 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47216 * 239.99875 * 2 1 3 27 27 H 1.09006 * 109.46879 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46861 * 299.99544 * 3 2 1 29 29 H 1.08994 * 109.47371 * 60.00226 * 3 2 1 30 30 H 1.08998 * 109.46688 * 60.00001 * 5 4 2 31 31 H 1.09005 * 109.47090 * 300.00194 * 5 4 2 32 32 H 1.08998 * 109.47629 * 60.00289 * 6 5 4 33 33 H 1.09005 * 109.47117 * 299.99890 * 6 5 4 34 34 H 1.08998 * 109.47120 * 59.99507 * 7 6 5 35 35 H 1.09005 * 109.46753 * 299.99642 * 7 6 5 36 36 H 0.96998 * 120.00141 * 0.02562 * 8 7 6 37 37 H 1.07997 * 119.78902 * 0.02562 * 10 9 8 38 38 H 1.08005 * 119.83675 * 179.97438 * 11 10 9 39 39 H 1.08001 * 120.05769 * 179.97438 * 12 11 10 40 40 H 0.97003 * 119.99955 * 179.97438 * 17 16 14 41 41 H 1.08002 * 120.15877 * 359.70841 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2000 -2.0782 0.9886 6 6 2.7078 -2.6926 2.2945 7 6 2.9159 -4.1964 2.1036 8 7 3.4027 -4.7846 3.3539 9 6 3.6666 -6.1545 3.4250 10 6 3.4659 -6.9605 2.3063 11 6 3.7239 -8.3197 2.3661 12 6 4.1824 -8.8897 3.5325 13 6 4.3897 -8.0882 4.6708 14 6 4.8600 -8.6667 5.8724 15 1 5.4230 -9.5879 5.8440 16 6 4.5956 -8.0457 7.0982 17 7 3.6456 -7.1506 7.1866 18 14 5.5993 -8.4948 8.6082 19 1 6.7857 -7.6061 8.6963 20 1 4.7645 -8.3280 9.8251 21 1 6.0456 -9.9073 8.5039 22 6 4.1266 -6.7086 4.6055 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 2.9319 -2.2467 0.1986 31 1 1.2537 -2.5434 0.7125 32 1 1.9757 -2.5241 3.0842 33 1 3.6541 -2.2275 2.5711 34 1 3.6482 -4.3645 1.3140 35 1 1.9698 -4.6617 1.8269 36 1 3.5411 -4.2230 4.1326 37 1 3.1069 -6.5225 1.3868 38 1 3.5647 -8.9358 1.4934 39 1 4.3818 -9.9504 3.5744 40 1 3.4622 -6.7203 8.0364 41 1 4.2870 -6.0839 5.4718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690503425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:49 Heat of formation + Delta-G solvation = -63.342719 kcal Electronic energy + Delta-G solvation = -18844.653305 eV Core-core repulsion = 15915.658930 eV Total energy + Delta-G solvation = -2928.994375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.76316 -39.34906 -37.04387 -35.34535 -34.15607 -32.40068 -31.34095 -29.28870 -28.10781 -27.13484 -25.65691 -23.30504 -22.37559 -22.01333 -21.61119 -19.09440 -17.83997 -17.55559 -16.99680 -16.51333 -16.45202 -16.05888 -15.71291 -15.43296 -14.65114 -14.55718 -14.24508 -14.04677 -13.73833 -13.56869 -13.35600 -13.12707 -12.97112 -12.76290 -12.66156 -12.50923 -12.37144 -12.26523 -12.08881 -11.93175 -11.57716 -11.50523 -11.30116 -11.06721 -10.51558 -10.49010 -9.25302 -8.61784 -7.92039 -6.31702 1.08647 1.33435 1.38825 1.51899 1.58970 2.23368 2.46537 2.81587 3.03872 3.85778 3.94132 3.96448 4.10954 4.13393 4.22028 4.30813 4.48565 4.53661 4.55119 4.63628 4.74543 4.80410 4.86421 4.91241 4.94543 4.99917 5.12547 5.13464 5.20690 5.28793 5.30824 5.33213 5.45124 5.60492 5.95962 6.11020 6.21880 6.25813 6.32621 6.58205 6.94069 7.04571 7.06580 7.24252 8.38722 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.003178 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.024434 B = 8808.953703 C = 9524.136264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.071 3.929 3 C -0.148 4.148 4 O -0.406 6.406 5 C 0.071 3.929 6 C -0.118 4.118 7 C 0.141 3.859 8 N -0.757 5.757 9 C 0.217 3.783 10 C -0.302 4.302 11 C -0.063 4.063 12 C -0.285 4.285 13 C 0.106 3.894 14 C -0.503 4.503 15 H 0.072 0.928 16 C 0.036 3.964 17 N -0.822 5.822 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.260 4.260 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.393 0.607 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.091 0.909 40 H 0.285 0.715 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 14.128 -11.482 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 C -0.205 4.205 4 O -0.326 6.326 5 C -0.006 4.006 6 C -0.156 4.156 7 C 0.017 3.983 8 N -0.390 5.390 9 C 0.116 3.884 10 C -0.325 4.325 11 C -0.081 4.081 12 C -0.306 4.306 13 C 0.103 3.897 14 C -0.533 4.533 15 H 0.090 0.910 16 C -0.179 4.179 17 N -0.448 5.448 18 Si 0.802 3.198 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.284 4.284 23 H 0.074 0.926 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.226 0.774 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.198 14.407 -11.363 18.823 hybrid contribution 0.264 -0.309 0.990 1.070 sum -3.934 14.098 -10.372 17.939 Atomic orbital electron populations 1.22296 0.95407 1.02358 1.03056 1.22320 0.94254 0.94295 0.87787 1.21881 1.01577 0.93942 1.03142 1.87886 1.86942 1.20527 1.37247 1.22348 1.00161 0.81220 0.96885 1.21516 1.02398 0.93379 0.98271 1.21024 0.98450 0.92106 0.86767 1.44506 1.75692 1.04897 1.13885 1.17784 0.93055 0.83875 0.93661 1.20242 1.20279 0.94158 0.97805 1.20668 0.96448 0.94518 0.96508 1.21035 1.15706 0.98028 0.95800 1.17739 0.87577 0.91624 0.92721 1.19808 1.32777 1.09056 0.91663 0.90972 1.26735 0.94269 0.93443 1.03450 1.69927 1.24288 1.22325 1.28282 0.85233 0.78674 0.79834 0.76090 1.18803 1.19247 1.18293 1.20665 1.15920 0.95393 0.96454 0.92586 0.89818 0.92824 0.91180 0.92401 0.89226 0.92495 0.91940 0.92363 0.91339 0.90973 0.92477 0.92946 0.77393 0.86729 0.86190 0.89115 0.90464 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.53 71.98 0.69 -1.81 16 2 C 0.07 1.15 3.34 30.59 0.10 1.26 16 3 C -0.15 -2.03 9.56 71.98 0.69 -1.34 16 4 O -0.41 -9.11 9.99 -148.98 -1.49 -10.60 16 5 C 0.07 1.45 5.75 71.98 0.41 1.87 16 6 C -0.12 -2.85 5.70 30.60 0.17 -2.68 16 7 C 0.14 4.10 4.91 86.38 0.42 4.53 16 8 N -0.76 -28.95 5.73 -339.55 -1.95 -30.90 16 9 C 0.22 10.30 6.64 38.16 0.25 10.56 16 10 C -0.30 -13.48 9.32 22.59 0.21 -13.27 16 11 C -0.06 -2.88 10.01 22.20 0.22 -2.65 16 12 C -0.29 -14.85 9.79 22.75 0.22 -14.63 16 13 C 0.11 6.07 5.57 -21.31 -0.12 5.95 16 14 C -0.50 -28.52 9.05 23.46 0.21 -28.31 16 15 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 16 C 0.04 1.88 5.14 85.25 0.44 2.31 16 17 N -0.82 -44.55 10.95 21.82 0.24 -44.31 16 18 Si 0.98 39.71 29.59 68.60 2.03 41.74 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 22 C -0.26 -14.24 8.53 22.86 0.19 -14.04 16 23 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.81 7.87 -2.38 -0.02 0.79 16 26 H 0.07 0.98 7.79 -2.38 -0.02 0.96 16 27 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 31 H 0.06 1.10 7.87 -2.38 -0.02 1.08 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.06 1.61 7.94 -2.39 -0.02 1.59 16 35 H 0.05 1.53 7.94 -2.38 -0.02 1.51 16 36 H 0.39 14.57 8.48 -92.71 -0.79 13.78 16 37 H 0.11 4.38 6.70 -2.91 -0.02 4.36 16 38 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 39 H 0.09 4.51 8.06 -2.91 -0.02 4.48 16 40 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 41 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 Total: -1.00 -63.58 338.58 3.17 -60.41 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: 0.21 Total: 35.91 kcal Atomic # 6 Polarization: -56.38 SS G_CDS: 4.12 Total: -52.26 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -1.71 Total: -75.21 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.49 Total: -10.60 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -63.58 3.17 -60.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690503425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.930 kcal (2) G-P(sol) polarization free energy of solvation -63.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds