Wall clock time and date at job start Mon Mar 30 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47583 * 2 1 4 4 H 1.09000 * 109.47407 * 179.59568 * 3 2 1 5 5 C 1.50701 * 109.46816 * 299.59575 * 3 2 1 6 6 H 1.08000 * 120.00104 * 120.00113 * 5 3 2 7 7 C 1.37882 * 120.00053 * 300.00166 * 5 3 2 8 8 N 1.31515 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99950 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47103 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47376 * 119.99594 * 9 7 5 12 12 H 1.48504 * 109.46798 * 239.99770 * 9 7 5 13 13 N 1.46900 * 109.47023 * 59.59250 * 3 2 1 14 14 C 1.46900 * 110.99645 * 86.66198 * 13 3 2 15 15 H 1.09000 * 109.47245 * 326.24596 * 14 13 3 16 16 C 1.52995 * 109.47250 * 86.24880 * 14 13 3 17 17 C 1.52997 * 109.46933 * 206.24619 * 14 13 3 18 18 O 1.42898 * 109.47670 * 295.00018 * 17 14 13 19 19 C 1.35900 * 117.00664 * 179.97438 * 18 17 14 20 20 C 1.38735 * 120.04891 * 359.72786 * 19 18 17 21 21 C 1.38148 * 119.93541 * 179.74087 * 20 19 18 22 22 C 1.38263 * 120.06035 * 0.51083 * 21 20 19 23 23 C 1.38269 * 120.11169 * 359.76648 * 22 21 20 24 24 C 1.38145 * 120.05035 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.47462 * 176.29389 * 1 2 3 26 26 H 1.09000 * 109.46776 * 296.29259 * 1 2 3 27 27 H 1.09003 * 109.47048 * 56.28819 * 1 2 3 28 28 H 1.09005 * 109.47048 * 239.99442 * 2 1 3 29 29 H 1.09003 * 109.47364 * 120.00074 * 2 1 3 30 30 H 0.96999 * 119.99767 * 180.02562 * 8 7 5 31 31 H 1.00898 * 110.99837 * 210.61498 * 13 3 2 32 32 H 1.08999 * 109.47340 * 299.99647 * 16 14 13 33 33 H 1.09000 * 109.47228 * 59.99706 * 16 14 13 34 34 H 1.08999 * 109.47588 * 179.97438 * 16 14 13 35 35 H 1.09005 * 109.47066 * 55.00326 * 17 14 13 36 36 H 1.09004 * 109.47361 * 175.00163 * 17 14 13 37 37 H 1.07994 * 120.03241 * 359.97438 * 20 19 18 38 38 H 1.08009 * 119.96825 * 180.27857 * 21 20 19 39 39 H 1.08004 * 119.94514 * 179.74469 * 22 21 20 40 40 H 1.08000 * 119.97238 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.02196 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4424 0.0073 5 6 1.5460 2.1500 -1.2355 6 1 0.9245 3.0283 -1.1426 7 6 1.8873 1.6759 -2.4844 8 7 2.6445 0.6065 -2.5975 9 14 1.2754 2.5532 -4.0158 10 1 0.4478 3.7209 -3.6199 11 1 2.4361 3.0177 -4.8174 12 1 0.4555 1.6183 -4.8275 13 7 1.5425 2.1378 1.1945 14 6 2.4396 1.9268 2.3384 15 1 2.8749 0.9292 2.2796 16 6 3.5558 2.9728 2.3109 17 6 1.6466 2.0613 3.6399 18 8 1.1735 3.4030 3.7731 19 6 0.4449 3.6932 4.8830 20 6 0.1858 2.7051 5.8218 21 6 -0.5506 3.0039 6.9518 22 6 -1.0382 4.2836 7.1424 23 6 -0.7862 5.2687 6.2054 24 6 -0.0458 4.9763 5.0763 25 1 -0.3634 -1.0254 -0.0664 26 1 -0.3633 0.4552 0.9214 27 1 -0.3633 0.5704 -0.8549 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.8849 0.2732 -3.4761 31 1 1.4137 3.1219 1.0126 32 1 4.1208 2.8770 1.3837 33 1 3.1205 3.9703 2.3698 34 1 4.2212 2.8165 3.1600 35 1 0.7983 1.3770 3.6209 36 1 2.2909 1.8177 4.4848 37 1 0.5626 1.7043 5.6712 38 1 -0.7488 2.2362 7.6853 39 1 -1.6172 4.5142 8.0245 40 1 -1.1684 6.2674 6.3563 41 1 0.1504 5.7459 4.3445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699335268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:21 Heat of formation + Delta-G solvation = -39.195228 kcal Electronic energy + Delta-G solvation = -19905.684508 eV Core-core repulsion = 16977.737247 eV Total energy + Delta-G solvation = -2927.947261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99200 -38.95821 -37.79120 -35.25957 -33.15213 -31.89424 -30.89582 -30.16789 -27.82814 -27.54028 -25.09549 -23.65119 -23.17503 -21.78252 -20.58615 -19.12004 -18.37948 -17.03173 -16.83054 -16.77855 -16.55350 -15.75007 -15.46888 -15.25241 -14.98349 -14.47309 -14.24979 -14.14173 -13.90587 -13.58381 -13.47095 -13.35005 -12.85260 -12.66663 -12.49364 -12.40415 -12.27435 -12.12481 -11.88711 -11.75287 -11.58465 -11.47264 -11.26111 -10.76005 -10.52747 -9.88292 -9.05627 -8.92993 -8.09010 -6.20005 0.46323 0.58772 1.39644 1.42783 1.53203 2.38847 2.42964 2.92870 3.19894 3.57938 3.87927 4.03546 4.10453 4.19704 4.32529 4.40255 4.42836 4.56558 4.61137 4.65848 4.71119 4.79197 4.80247 4.91162 4.95075 5.05348 5.15220 5.29084 5.34152 5.44317 5.47789 5.55703 5.58553 5.66140 5.73089 5.85060 5.92272 5.96971 6.30951 6.52508 6.60513 6.83752 7.05880 7.48600 8.96061 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028312 B = 0.004204 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.738530 B = 6658.242227 C = 6856.135136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C 0.222 3.778 4 H -0.029 1.029 5 C -0.521 4.521 6 H 0.052 0.948 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.673 5.673 14 C 0.083 3.917 15 H 0.084 0.916 16 C -0.165 4.165 17 C 0.084 3.916 18 O -0.322 6.322 19 C 0.113 3.887 20 C -0.224 4.224 21 C -0.086 4.086 22 C -0.168 4.168 23 C -0.084 4.084 24 C -0.177 4.177 25 H 0.032 0.968 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.023 0.977 30 H 0.260 0.740 31 H 0.332 0.668 32 H 0.036 0.964 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.274 4.772 18.261 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.114 3.886 4 H -0.012 1.012 5 C -0.560 4.560 6 H 0.070 0.930 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.303 5.303 14 C -0.027 4.027 15 H 0.102 0.898 16 C -0.224 4.224 17 C 0.008 3.992 18 O -0.235 6.235 19 C 0.067 3.933 20 C -0.243 4.243 21 C -0.104 4.104 22 C -0.186 4.186 23 C -0.101 4.101 24 C -0.196 4.196 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.151 0.849 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.168 0.832 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.561 4.261 18.128 19.173 hybrid contribution 0.799 0.554 -1.487 1.777 sum -3.762 4.815 16.641 17.728 Atomic orbital electron populations 1.21303 0.96228 0.98227 1.00705 1.21337 0.96066 0.97788 0.98608 1.18926 0.91024 0.91945 0.86711 1.01162 1.21484 1.31136 1.11771 0.91572 0.92963 1.25571 0.95291 0.95656 1.01561 1.70012 1.37643 1.23869 1.23986 0.85618 0.78050 0.78750 0.79889 1.19382 1.20853 1.20766 1.60702 1.47844 1.16282 1.05491 1.21663 0.91435 0.99087 0.90551 0.89763 1.22276 0.98957 0.99837 1.01316 1.22874 0.97862 0.81216 0.97210 1.86075 1.66065 1.31706 1.39676 1.19420 0.92407 0.94824 0.86614 1.21497 1.06106 0.99567 0.97082 1.21298 0.95148 0.97659 0.96257 1.21402 1.02975 0.93200 1.01032 1.21282 0.95826 1.00702 0.92332 1.20691 1.03304 0.94721 1.00848 0.94895 0.93105 0.94814 0.92387 0.95846 0.93071 0.85045 0.94499 0.92394 0.90972 0.91884 0.90411 0.84913 0.83618 0.83436 0.83180 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.75 9.52 71.98 0.69 -4.06 16 2 C -0.10 -4.78 5.58 30.59 0.17 -4.61 16 3 C 0.22 11.03 2.10 44.17 0.09 11.12 16 4 H -0.03 -1.61 7.21 -2.39 -0.02 -1.62 16 5 C -0.52 -28.25 7.28 25.60 0.19 -28.07 16 6 H 0.05 2.85 7.59 -2.91 -0.02 2.82 16 7 C 0.02 1.00 5.30 84.66 0.45 1.45 16 8 N -0.92 -52.33 11.32 21.45 0.24 -52.08 16 9 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 N -0.67 -28.06 5.30 -473.32 -2.51 -30.56 16 14 C 0.08 2.85 2.80 44.91 0.13 2.98 16 15 H 0.08 2.95 7.24 -2.39 -0.02 2.93 16 16 C -0.17 -5.36 8.95 71.98 0.64 -4.71 16 17 C 0.08 2.42 4.58 71.98 0.33 2.75 16 18 O -0.32 -10.06 9.20 -92.42 -0.85 -10.91 16 19 C 0.11 3.15 6.69 22.51 0.15 3.30 16 20 C -0.22 -5.32 9.04 22.37 0.20 -5.12 16 21 C -0.09 -1.65 10.04 22.25 0.22 -1.42 16 22 C -0.17 -2.97 10.04 22.28 0.22 -2.74 16 23 C -0.08 -1.63 10.04 22.25 0.22 -1.40 16 24 C -0.18 -4.44 9.99 22.36 0.22 -4.22 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 2.13 7.71 -2.39 -0.02 2.11 16 27 H 0.03 1.62 7.10 -2.39 -0.02 1.60 16 28 H 0.06 3.15 6.06 -2.38 -0.01 3.13 16 29 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 30 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.33 14.41 7.90 -89.70 -0.71 13.70 16 32 H 0.04 1.35 7.54 -2.39 -0.02 1.33 16 33 H 0.06 1.90 7.54 -2.39 -0.02 1.88 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.85 7.65 -2.38 -0.02 1.84 16 36 H 0.08 1.84 7.68 -2.38 -0.02 1.82 16 37 H 0.13 2.86 6.30 -2.91 -0.02 2.84 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.13 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -60.55 330.55 3.13 -57.42 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.29 Total: 25.07 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 3.93 Total: -34.76 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -2.26 Total: -82.65 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.85 Total: -10.91 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -60.55 3.13 -57.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699335268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.220 kcal (2) G-P(sol) polarization free energy of solvation -60.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds