Wall clock time and date at job start Mon Mar 30 2020 06:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46860 * 2 1 4 4 H 1.08998 * 109.46854 * 180.86342 * 3 2 1 5 5 C 1.50702 * 109.47035 * 60.86341 * 3 2 1 6 6 H 1.07994 * 120.00080 * 239.99384 * 5 3 2 7 7 C 1.37877 * 119.99898 * 60.00580 * 5 3 2 8 8 N 1.31511 * 119.99926 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00040 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47068 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47349 * 119.99285 * 9 7 5 12 12 H 1.48496 * 109.47141 * 239.99936 * 9 7 5 13 13 N 1.46897 * 109.46959 * 300.86656 * 3 2 1 14 14 C 1.46909 * 110.99726 * 278.62394 * 13 3 2 15 15 C 1.53001 * 109.46816 * 175.01484 * 14 13 3 16 16 H 1.08998 * 109.46961 * 60.00255 * 15 14 13 17 17 C 1.53000 * 109.46755 * 180.02562 * 15 14 13 18 18 O 1.42901 * 109.47154 * 300.00037 * 15 14 13 19 19 C 1.35896 * 116.99850 * 155.14791 * 18 15 14 20 20 C 1.38733 * 120.05652 * 4.88122 * 19 18 15 21 21 C 1.38152 * 119.94200 * 179.74459 * 20 19 18 22 22 C 1.38269 * 120.05557 * 0.51429 * 21 20 19 23 23 C 1.38268 * 120.10904 * 359.76055 * 22 21 20 24 24 C 1.38134 * 120.05837 * 359.97438 * 23 22 21 25 25 H 1.08993 * 109.47190 * 55.03808 * 1 2 3 26 26 H 1.09002 * 109.47449 * 295.03095 * 1 2 3 27 27 H 1.09001 * 109.46785 * 175.03978 * 1 2 3 28 28 H 1.09001 * 109.46702 * 119.99971 * 2 1 3 29 29 H 1.08996 * 109.46775 * 239.99500 * 2 1 3 30 30 H 0.97006 * 119.99580 * 179.97438 * 8 7 5 31 31 H 1.00905 * 111.00203 * 154.67437 * 13 3 2 32 32 H 1.08998 * 109.46742 * 295.01492 * 14 13 3 33 33 H 1.09002 * 109.46717 * 55.01641 * 14 13 3 34 34 H 1.08998 * 109.47336 * 60.00290 * 17 15 14 35 35 H 1.08998 * 109.47125 * 180.02562 * 17 15 14 36 36 H 1.08997 * 109.47345 * 299.99755 * 17 15 14 37 37 H 1.07996 * 120.02862 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.96830 * 180.23045 * 21 20 19 39 39 H 1.07992 * 119.94377 * 179.74587 * 22 21 20 40 40 H 1.08005 * 119.96867 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.03171 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0155 5 6 1.5552 2.1467 1.2411 6 1 0.9330 3.0252 1.1552 7 6 1.9061 1.6694 2.4861 8 7 2.6635 0.5994 2.5905 9 14 1.3058 2.5426 4.0244 10 1 0.4758 3.7120 3.6379 11 1 0.4921 1.6056 4.8399 12 1 2.4724 3.0051 4.8183 13 7 1.5332 2.1410 -1.1888 14 6 2.3513 1.8322 -2.3694 15 6 1.7230 2.4751 -3.6074 16 1 1.6750 3.5555 -3.4711 17 6 2.5746 2.1530 -4.8370 18 8 0.4034 1.9595 -3.7942 19 6 -0.4734 2.7411 -4.4776 20 6 -0.0456 3.9323 -5.0458 21 6 -0.9377 4.7224 -5.7446 22 6 -2.2584 4.3322 -5.8689 23 6 -2.6884 3.1483 -5.2987 24 6 -1.7991 2.3520 -4.6036 25 1 -0.3633 0.5888 -0.8421 26 1 -0.3634 0.4348 0.9311 27 1 -0.3633 -1.0238 -0.0889 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 2.9107 0.2639 3.4665 31 1 1.4872 3.1365 -1.0311 32 1 3.3578 2.2255 -2.2268 33 1 2.3992 0.7518 -2.5056 34 1 2.6222 1.0726 -4.9732 35 1 2.1273 2.6114 -5.7190 36 1 3.5813 2.5460 -4.6949 37 1 0.9847 4.2397 -4.9450 38 1 -0.6043 5.6480 -6.1902 39 1 -2.9551 4.9533 -6.4120 40 1 -3.7206 2.8459 -5.3968 41 1 -2.1356 1.4275 -4.1581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700329620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:20 Heat of formation + Delta-G solvation = -20.469889 kcal Electronic energy + Delta-G solvation = -20023.578737 eV Core-core repulsion = 17096.443468 eV Total energy + Delta-G solvation = -2927.135269 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.05074 -37.61916 -36.07765 -33.29095 -31.64065 -30.81517 -30.00727 -29.46506 -26.67979 -24.40299 -23.08876 -22.98692 -22.20983 -20.46600 -18.95528 -18.21726 -16.55533 -15.93437 -15.50556 -15.14065 -14.78301 -14.60905 -14.15873 -13.80555 -13.34451 -13.26513 -13.12575 -12.68804 -12.37106 -12.20874 -12.11965 -11.75756 -11.61005 -11.43011 -11.05597 -10.92407 -10.84445 -10.55343 -10.41640 -10.27157 -9.96262 -9.67654 -9.30317 -8.92953 -8.73970 -8.45628 -7.99825 -7.20051 -6.00277 -4.05283 1.41004 1.57093 3.29442 3.37763 3.41862 3.46246 3.89579 4.41187 4.82249 4.91696 4.94781 5.05130 5.17346 5.25809 5.31404 5.43534 5.52169 5.63233 5.67634 5.76463 5.86187 6.04272 6.08977 6.14165 6.31506 6.45304 6.50837 6.58567 6.58795 6.77627 6.89813 6.92146 7.31953 7.32520 7.52950 7.72741 7.78196 7.82265 7.87176 8.30886 8.40495 8.68015 9.03552 9.59531 11.05768 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023788 B = 0.004624 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.798991 B = 6053.787785 C = 6424.533751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.217 3.783 4 H -0.003 1.003 5 C -0.508 4.508 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.063 3.937 15 C 0.088 3.912 16 H 0.068 0.932 17 C -0.179 4.179 18 O -0.284 6.284 19 C 0.147 3.853 20 C -0.217 4.217 21 C -0.083 4.083 22 C -0.172 4.172 23 C -0.082 4.082 24 C -0.156 4.156 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.011 0.989 28 H 0.086 0.914 29 H 0.009 0.991 30 H 0.259 0.741 31 H 0.327 0.673 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.249 5.069 -15.872 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.015 0.985 5 C -0.547 4.547 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.308 5.308 14 C -0.067 4.067 15 C 0.031 3.969 16 H 0.086 0.914 17 C -0.237 4.237 18 O -0.197 6.197 19 C 0.101 3.899 20 C -0.236 4.236 21 C -0.101 4.101 22 C -0.190 4.190 23 C -0.100 4.100 24 C -0.175 4.175 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.104 0.896 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.644 4.263 -15.762 16.976 hybrid contribution 0.698 1.110 1.035 1.671 sum -3.945 5.373 -14.727 16.165 Atomic orbital electron populations 1.21434 0.97417 0.97148 1.01674 1.21425 0.95167 0.98112 0.99345 1.19121 0.92539 0.91585 0.85832 0.98521 1.21186 1.31359 1.11928 0.90228 0.92271 1.24880 0.95080 0.95016 0.98920 1.69898 1.36622 1.22673 1.23676 0.86525 0.78493 0.79700 0.83201 1.19790 1.20999 1.21196 1.60606 1.52905 1.13093 1.04211 1.22003 0.93752 1.01144 0.89821 1.22565 0.80390 0.98392 0.95570 0.91426 1.22360 1.00226 1.03288 0.97800 1.86279 1.21365 1.42870 1.69151 1.19143 0.90257 0.89844 0.90691 1.21321 1.01022 0.96648 1.04627 1.20894 0.93314 0.98619 0.97245 1.20959 0.96073 0.98069 1.03923 1.20926 0.98985 0.94067 0.96025 1.20493 0.90762 1.02356 1.03857 0.92948 0.93211 0.96982 0.89585 0.97259 0.93061 0.85582 0.94457 0.90606 0.91361 0.92147 0.91133 0.85540 0.86337 0.86450 0.85798 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 9.49 37.16 0.35 -2.43 16 2 C -0.10 -2.52 5.53 -26.73 -0.15 -2.67 16 3 C 0.22 5.39 2.29 -68.87 -0.16 5.23 16 4 H 0.00 -0.08 7.91 -51.93 -0.41 -0.49 16 5 C -0.51 -13.70 7.47 -34.44 -0.26 -13.96 16 6 H 0.06 1.60 7.67 -52.49 -0.40 1.20 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.23 11.31 55.43 0.63 -24.61 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.68 -14.25 5.24 -107.95 -0.57 -14.82 16 14 C 0.06 1.11 5.17 -3.82 -0.02 1.09 16 15 C 0.09 1.28 2.48 -26.73 -0.07 1.22 16 16 H 0.07 0.94 6.29 -51.93 -0.33 0.62 16 17 C -0.18 -2.11 9.18 37.16 0.34 -1.77 16 18 O -0.28 -4.74 9.66 -19.41 -0.19 -4.93 16 19 C 0.15 2.21 6.60 -39.21 -0.26 1.95 16 20 C -0.22 -2.83 8.25 -39.43 -0.33 -3.16 16 21 C -0.08 -0.95 10.04 -39.60 -0.40 -1.34 16 22 C -0.17 -1.90 10.04 -39.56 -0.40 -2.30 16 23 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 24 C -0.16 -2.18 9.99 -39.43 -0.39 -2.57 16 25 H 0.05 1.20 7.43 -51.93 -0.39 0.82 16 26 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 2.35 6.05 -51.93 -0.31 2.04 16 29 H 0.01 0.21 7.18 -51.93 -0.37 -0.17 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.33 6.77 8.37 -39.29 -0.33 6.44 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.41 7.10 -51.93 -0.37 1.04 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.66 6.94 -51.93 -0.36 0.30 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.13 1.49 5.45 -52.49 -0.29 1.20 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -28.98 329.85 -8.86 -37.84 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.46 Total: 5.74 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -2.22 Total: -20.45 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.06 Total: -39.42 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.19 Total: -4.93 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.98 -8.86 -37.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700329620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.366 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds