Wall clock time and date at job start Mon Mar 30 2020 06:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46860 * 2 1 4 4 H 1.08998 * 109.46854 * 180.86342 * 3 2 1 5 5 C 1.50702 * 109.47035 * 60.86341 * 3 2 1 6 6 H 1.07994 * 120.00080 * 239.99384 * 5 3 2 7 7 C 1.37877 * 119.99898 * 60.00580 * 5 3 2 8 8 N 1.31511 * 119.99926 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00040 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47068 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47349 * 119.99285 * 9 7 5 12 12 H 1.48496 * 109.47141 * 239.99936 * 9 7 5 13 13 N 1.46897 * 109.46959 * 300.86656 * 3 2 1 14 14 C 1.46909 * 110.99726 * 278.62394 * 13 3 2 15 15 C 1.53001 * 109.46816 * 175.01484 * 14 13 3 16 16 H 1.08998 * 109.46961 * 60.00255 * 15 14 13 17 17 C 1.53000 * 109.46755 * 180.02562 * 15 14 13 18 18 O 1.42901 * 109.47154 * 300.00037 * 15 14 13 19 19 C 1.35896 * 116.99850 * 155.14791 * 18 15 14 20 20 C 1.38733 * 120.05652 * 4.88122 * 19 18 15 21 21 C 1.38152 * 119.94200 * 179.74459 * 20 19 18 22 22 C 1.38269 * 120.05557 * 0.51429 * 21 20 19 23 23 C 1.38268 * 120.10904 * 359.76055 * 22 21 20 24 24 C 1.38134 * 120.05837 * 359.97438 * 23 22 21 25 25 H 1.08993 * 109.47190 * 55.03808 * 1 2 3 26 26 H 1.09002 * 109.47449 * 295.03095 * 1 2 3 27 27 H 1.09001 * 109.46785 * 175.03978 * 1 2 3 28 28 H 1.09001 * 109.46702 * 119.99971 * 2 1 3 29 29 H 1.08996 * 109.46775 * 239.99500 * 2 1 3 30 30 H 0.97006 * 119.99580 * 179.97438 * 8 7 5 31 31 H 1.00905 * 111.00203 * 154.67437 * 13 3 2 32 32 H 1.08998 * 109.46742 * 295.01492 * 14 13 3 33 33 H 1.09002 * 109.46717 * 55.01641 * 14 13 3 34 34 H 1.08998 * 109.47336 * 60.00290 * 17 15 14 35 35 H 1.08998 * 109.47125 * 180.02562 * 17 15 14 36 36 H 1.08997 * 109.47345 * 299.99755 * 17 15 14 37 37 H 1.07996 * 120.02862 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.96830 * 180.23045 * 21 20 19 39 39 H 1.07992 * 119.94377 * 179.74587 * 22 21 20 40 40 H 1.08005 * 119.96867 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.03171 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0155 5 6 1.5552 2.1467 1.2411 6 1 0.9330 3.0252 1.1552 7 6 1.9061 1.6694 2.4861 8 7 2.6635 0.5994 2.5905 9 14 1.3058 2.5426 4.0244 10 1 0.4758 3.7120 3.6379 11 1 0.4921 1.6056 4.8399 12 1 2.4724 3.0051 4.8183 13 7 1.5332 2.1410 -1.1888 14 6 2.3513 1.8322 -2.3694 15 6 1.7230 2.4751 -3.6074 16 1 1.6750 3.5555 -3.4711 17 6 2.5746 2.1530 -4.8370 18 8 0.4034 1.9595 -3.7942 19 6 -0.4734 2.7411 -4.4776 20 6 -0.0456 3.9323 -5.0458 21 6 -0.9377 4.7224 -5.7446 22 6 -2.2584 4.3322 -5.8689 23 6 -2.6884 3.1483 -5.2987 24 6 -1.7991 2.3520 -4.6036 25 1 -0.3633 0.5888 -0.8421 26 1 -0.3634 0.4348 0.9311 27 1 -0.3633 -1.0238 -0.0889 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 2.9107 0.2639 3.4665 31 1 1.4872 3.1365 -1.0311 32 1 3.3578 2.2255 -2.2268 33 1 2.3992 0.7518 -2.5056 34 1 2.6222 1.0726 -4.9732 35 1 2.1273 2.6114 -5.7190 36 1 3.5813 2.5460 -4.6949 37 1 0.9847 4.2397 -4.9450 38 1 -0.6043 5.6480 -6.1902 39 1 -2.9551 4.9533 -6.4120 40 1 -3.7206 2.8459 -5.3968 41 1 -2.1356 1.4275 -4.1581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700329620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:20 Heat of formation + Delta-G solvation = -36.706878 kcal Electronic energy + Delta-G solvation = -20024.282826 eV Core-core repulsion = 17096.443468 eV Total energy + Delta-G solvation = -2927.839358 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10781 -38.78111 -37.75049 -34.90961 -33.33112 -32.01541 -31.45329 -30.43893 -28.52082 -25.99526 -24.89835 -24.11273 -23.21572 -21.63031 -20.89665 -19.27696 -18.38740 -17.17995 -16.80316 -16.54680 -16.21015 -15.88259 -15.58670 -15.21675 -15.03445 -14.39442 -14.30630 -14.10019 -13.87711 -13.76991 -13.31887 -13.14124 -13.00724 -12.84536 -12.64626 -12.41446 -12.35856 -12.14754 -11.88426 -11.82302 -11.57031 -11.37537 -11.24765 -10.77516 -10.54107 -9.86101 -9.02001 -8.95028 -8.09817 -6.21606 0.47895 0.61333 1.40197 1.43069 1.53726 2.37849 2.42521 2.95165 3.19043 3.50112 3.86315 4.00020 4.05389 4.14887 4.27739 4.35843 4.52634 4.57194 4.58936 4.63011 4.73401 4.75550 4.80219 4.92560 4.94524 4.95445 5.17189 5.20572 5.31796 5.39219 5.50730 5.54633 5.56838 5.67645 5.71873 5.79380 5.88813 5.99852 6.29207 6.49717 6.65884 6.81509 7.02515 7.47229 8.95665 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023788 B = 0.004624 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.798991 B = 6053.787785 C = 6424.533751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C 0.223 3.777 4 H -0.034 1.034 5 C -0.520 4.520 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.677 5.677 14 C 0.064 3.936 15 C 0.093 3.907 16 H 0.076 0.924 17 C -0.170 4.170 18 O -0.312 6.312 19 C 0.119 3.881 20 C -0.224 4.224 21 C -0.085 4.085 22 C -0.170 4.170 23 C -0.083 4.083 24 C -0.180 4.180 25 H 0.052 0.948 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.017 0.983 30 H 0.261 0.739 31 H 0.329 0.671 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.136 0.864 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 6.686 -17.205 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.115 3.885 4 H -0.017 1.017 5 C -0.559 4.559 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.207 1.207 13 N -0.307 5.307 14 C -0.066 4.066 15 C 0.037 3.963 16 H 0.093 0.907 17 C -0.228 4.228 18 O -0.226 6.226 19 C 0.073 3.927 20 C -0.243 4.243 21 C -0.103 4.103 22 C -0.188 4.188 23 C -0.101 4.101 24 C -0.199 4.199 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.154 0.846 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.606 5.890 -17.118 18.951 hybrid contribution 0.962 0.628 1.370 1.788 sum -4.644 6.517 -15.747 17.664 Atomic orbital electron populations 1.21273 0.96189 0.98243 1.00547 1.21309 0.96113 0.97855 0.98363 1.18897 0.90574 0.92047 0.87004 1.01691 1.21423 1.31210 1.11917 0.91314 0.92702 1.25613 0.95210 0.95646 1.01740 1.70023 1.37516 1.23813 1.24305 0.85559 0.78050 0.78684 0.79647 1.19262 1.20835 1.20676 1.60507 1.53524 1.12869 1.03832 1.22047 0.94150 1.00680 0.89751 1.22493 0.80358 0.98286 0.95201 0.90656 1.22294 1.00641 1.03150 0.96712 1.86212 1.22165 1.44038 1.70198 1.19405 0.90420 0.90892 0.91987 1.21501 1.01942 0.96161 1.04697 1.21294 0.93302 0.99260 0.96413 1.21381 0.96540 0.97799 1.03038 1.21256 0.99789 0.93982 0.95084 1.20682 0.91167 1.02892 1.05126 0.92877 0.95104 0.94972 0.92278 0.96412 0.93021 0.85417 0.93577 0.91982 0.91914 0.90965 0.89326 0.84622 0.83532 0.83474 0.83396 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.92 9.49 71.98 0.68 -4.23 16 2 C -0.10 -4.92 5.53 30.60 0.17 -4.75 16 3 C 0.22 11.37 2.29 44.17 0.10 11.47 16 4 H -0.03 -1.93 7.91 -2.39 -0.02 -1.95 16 5 C -0.52 -28.42 7.47 25.60 0.19 -28.23 16 6 H 0.05 2.99 7.67 -2.91 -0.02 2.96 16 7 C 0.02 0.93 5.30 84.65 0.45 1.38 16 8 N -0.92 -52.90 11.31 21.45 0.24 -52.66 16 9 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 N -0.68 -28.85 5.24 -495.43 -2.60 -31.44 16 14 C 0.06 2.24 5.17 86.30 0.45 2.68 16 15 C 0.09 2.67 2.48 30.59 0.08 2.75 16 16 H 0.08 2.02 6.29 -2.39 -0.02 2.01 16 17 C -0.17 -3.77 9.18 71.98 0.66 -3.11 16 18 O -0.31 -10.45 9.66 -92.38 -0.89 -11.34 16 19 C 0.12 3.51 6.60 22.51 0.15 3.66 16 20 C -0.22 -5.47 8.25 22.37 0.18 -5.28 16 21 C -0.08 -1.69 10.04 22.26 0.22 -1.47 16 22 C -0.17 -3.22 10.04 22.28 0.22 -2.99 16 23 C -0.08 -1.79 10.04 22.25 0.22 -1.56 16 24 C -0.18 -4.97 9.99 22.36 0.22 -4.75 16 25 H 0.05 2.45 7.43 -2.39 -0.02 2.43 16 26 H 0.03 1.52 7.42 -2.39 -0.02 1.50 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 3.31 6.05 -2.39 -0.01 3.30 16 29 H 0.02 0.83 7.18 -2.39 -0.02 0.81 16 30 H 0.26 14.31 8.31 -92.70 -0.77 13.53 16 31 H 0.33 13.72 8.37 -89.69 -0.75 12.97 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 2.34 7.10 -2.39 -0.02 2.33 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.44 6.94 -2.39 -0.02 1.42 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.14 2.93 5.45 -2.91 -0.02 2.91 16 38 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 39 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.12 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -62.73 329.85 3.04 -59.69 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.26 Total: 24.36 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 4.00 Total: -34.44 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -2.35 Total: -84.10 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.89 Total: -11.34 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -62.73 3.04 -59.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700329620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.984 kcal (2) G-P(sol) polarization free energy of solvation -62.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds