Wall clock time and date at job start Mon Mar 30 2020 07:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47218 * 2 1 4 4 N 1.46897 * 109.47115 * 179.97438 * 3 2 1 5 5 C 1.46907 * 111.00206 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47259 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.47033 * 304.99546 * 6 5 4 8 8 C 1.53002 * 109.47188 * 184.99600 * 6 5 4 9 9 O 1.42896 * 109.47328 * 64.99625 * 6 5 4 10 10 C 1.35682 * 117.00031 * 203.24390 * 9 6 5 11 11 C 1.39310 * 119.81748 * 355.51399 * 10 9 6 12 12 C 1.36432 * 120.18467 * 180.26065 * 11 10 9 13 13 C 1.40834 * 119.81232 * 359.47310 * 12 11 10 14 14 C 1.41211 * 120.17976 * 180.30093 * 13 12 11 15 15 H 1.07994 * 120.00133 * 331.09845 * 14 13 12 16 16 C 1.39897 * 120.00220 * 151.09383 * 14 13 12 17 17 N 1.30885 * 119.99585 * 348.98868 * 16 14 13 18 18 Si 1.86796 * 120.00269 * 168.98148 * 16 14 13 19 19 H 1.48503 * 109.47011 * 60.00230 * 18 16 14 20 20 H 1.48499 * 109.47358 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47125 * 300.00736 * 18 16 14 22 22 C 1.40835 * 119.64033 * 0.27524 * 13 12 11 23 23 C 1.36433 * 119.81087 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47332 * 59.99888 * 1 2 3 25 25 H 1.09004 * 109.47042 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47169 * 300.00224 * 1 2 3 27 27 H 1.08996 * 109.46891 * 239.99736 * 2 1 3 28 28 H 1.09001 * 109.46880 * 119.99833 * 2 1 3 29 29 H 1.09005 * 109.47233 * 59.99815 * 3 2 1 30 30 H 1.09001 * 109.47059 * 299.99723 * 3 2 1 31 31 H 1.00899 * 111.00434 * 56.04539 * 4 3 2 32 32 H 1.09000 * 109.47193 * 59.99712 * 5 4 3 33 33 H 1.09001 * 109.46716 * 300.00060 * 5 4 3 34 34 H 1.08993 * 109.46964 * 299.99870 * 8 6 5 35 35 H 1.09006 * 109.46595 * 59.99988 * 8 6 5 36 36 H 1.08995 * 109.47311 * 179.97438 * 8 6 5 37 37 H 1.08004 * 119.90579 * 0.02994 * 11 10 9 38 38 H 1.08004 * 120.09546 * 179.74946 * 12 11 10 39 39 H 0.97003 * 119.99549 * 179.97438 * 17 16 14 40 40 H 1.07995 * 120.09420 * 180.02562 * 22 13 12 41 41 H 1.07997 * 119.90746 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0355 2.8139 0.0013 6 6 5.5649 2.7730 0.0012 7 1 5.9124 2.1737 0.8429 8 6 6.1132 4.1958 0.1275 9 8 6.0259 2.1916 -1.2200 10 6 7.2642 1.6370 -1.2093 11 6 8.0578 1.7361 -0.0686 12 6 9.3061 1.1858 -0.0515 13 6 9.7874 0.5065 -1.1874 14 6 11.0758 -0.0715 -1.1759 15 1 11.8538 0.3557 -0.5607 16 6 11.3443 -1.1976 -1.9614 17 7 10.3619 -1.8440 -2.5360 18 14 13.1048 -1.7785 -2.1903 19 1 13.6907 -2.1155 -0.8680 20 1 13.1199 -2.9820 -3.0602 21 1 13.9036 -0.6994 -2.8251 22 6 8.9767 0.4063 -2.3346 23 6 7.7331 0.9675 -2.3374 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 3.8710 0.9162 -0.7805 32 1 3.6856 3.3370 0.8912 33 1 3.6864 3.3374 -0.8887 34 1 5.7657 4.7950 -0.7140 35 1 5.7615 4.6393 1.0591 36 1 7.2027 4.1667 0.1280 37 1 7.6852 2.2533 0.8033 38 1 9.9217 1.2671 0.8322 39 1 10.5481 -2.6245 -3.0810 40 1 9.3383 -0.1134 -3.2095 41 1 7.1099 0.8912 -3.2162 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710996332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:16 Heat of formation + Delta-G solvation = -53.114402 kcal Electronic energy + Delta-G solvation = -19368.309110 eV Core-core repulsion = 16439.758269 eV Total energy + Delta-G solvation = -2928.550841 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76341 -38.62503 -37.39595 -35.25888 -34.27018 -32.35511 -31.25198 -30.84637 -27.58742 -26.70821 -24.58897 -23.69205 -22.60125 -22.27816 -21.30275 -19.25467 -18.74835 -17.17762 -16.89161 -16.50377 -16.28969 -15.75194 -15.58905 -15.25193 -14.87445 -14.63599 -14.10906 -14.09599 -13.79928 -13.55436 -13.17363 -13.07094 -12.98434 -12.89208 -12.86863 -12.73383 -12.48551 -12.22110 -11.98678 -11.73736 -11.64795 -11.58863 -11.38959 -11.08575 -10.88393 -9.52369 -9.40602 -8.81100 -8.52419 -6.22517 0.98551 1.06245 1.40337 1.51765 1.54437 2.25126 2.62918 2.79998 3.14909 3.72047 3.90363 4.06805 4.13499 4.18512 4.26125 4.35266 4.39329 4.46666 4.59833 4.68342 4.69821 4.72668 4.80319 4.89292 4.94509 5.00060 5.12251 5.19412 5.23383 5.27662 5.29009 5.34312 5.40384 5.62892 5.69545 5.92603 6.08862 6.09021 6.30320 6.33649 6.60639 6.85111 6.99179 7.13529 8.44109 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025707 B = 0.003837 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.937604 B = 7296.410238 C = 8045.688447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.061 3.939 4 N -0.706 5.706 5 C 0.075 3.925 6 C 0.079 3.921 7 H 0.064 0.936 8 C -0.172 4.172 9 O -0.330 6.330 10 C 0.019 3.981 11 C -0.167 4.167 12 C -0.203 4.203 13 C 0.052 3.948 14 C -0.502 4.502 15 H 0.073 0.927 16 C 0.030 3.970 17 N -0.841 5.841 18 Si 0.984 3.016 19 H -0.261 1.261 20 H -0.270 1.270 21 H -0.261 1.261 22 C -0.144 4.144 23 C -0.139 4.139 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.341 0.659 32 H 0.108 0.892 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.285 0.715 40 H 0.110 0.890 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.576 6.317 4.095 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.068 4.068 4 N -0.337 5.337 5 C -0.055 4.055 6 C 0.023 3.977 7 H 0.082 0.918 8 C -0.229 4.229 9 O -0.246 6.246 10 C -0.025 4.025 11 C -0.186 4.186 12 C -0.222 4.222 13 C 0.050 3.950 14 C -0.533 4.533 15 H 0.092 0.908 16 C -0.182 4.182 17 N -0.469 5.469 18 Si 0.805 3.195 19 H -0.186 1.186 20 H -0.194 1.194 21 H -0.186 1.186 22 C -0.163 4.163 23 C -0.158 4.158 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.158 0.842 32 H 0.126 0.874 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.726 6.065 4.487 15.663 hybrid contribution 0.825 -0.245 -0.966 1.294 sum -12.901 5.820 3.522 14.584 Atomic orbital electron populations 1.21693 0.94051 1.02293 1.02266 1.21504 0.96785 0.95966 1.01964 1.22039 0.86443 0.97507 1.00819 1.60516 1.08433 1.14067 1.50694 1.22023 0.91094 0.90252 1.02084 1.22487 0.94614 0.94376 0.86272 0.91797 1.22285 1.01462 0.95505 1.03685 1.85832 1.30136 1.72547 1.36119 1.18605 0.85884 1.02286 0.95717 1.20710 0.95529 1.04847 0.97506 1.20855 0.96615 1.06970 0.97786 1.17929 0.94132 0.91887 0.91029 1.19664 0.97039 1.11636 1.24942 0.90835 1.26702 1.03152 0.95478 0.92910 1.69869 1.34840 1.16250 1.25960 0.85231 0.76982 0.78096 0.79211 1.18573 1.19414 1.18565 1.20919 0.94506 1.02175 0.98743 1.20014 0.96934 1.01698 0.97135 0.92450 0.92072 0.91891 0.92960 0.91975 0.90171 0.95102 0.84164 0.87443 0.94317 0.91592 0.88776 0.93086 0.85597 0.87891 0.90490 0.87258 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.12 -2.40 6.19 30.59 0.19 -2.21 16 3 C 0.06 1.22 5.68 86.30 0.49 1.71 16 4 N -0.71 -18.28 6.50 -513.89 -3.34 -21.62 16 5 C 0.07 1.78 5.39 86.30 0.46 2.25 16 6 C 0.08 2.35 2.47 30.59 0.08 2.43 16 7 H 0.06 2.06 6.35 -2.38 -0.02 2.05 16 8 C -0.17 -4.31 9.13 71.98 0.66 -3.66 16 9 O -0.33 -12.71 9.31 -90.00 -0.84 -13.55 16 10 C 0.02 0.86 6.61 22.79 0.15 1.01 16 11 C -0.17 -7.47 8.10 22.11 0.18 -7.29 16 12 C -0.20 -10.14 9.74 22.48 0.22 -9.92 16 13 C 0.05 2.89 5.55 -21.28 -0.12 2.78 16 14 C -0.50 -27.78 9.05 23.40 0.21 -27.57 16 15 H 0.07 3.90 7.87 -2.91 -0.02 3.88 16 16 C 0.03 1.55 5.24 85.24 0.45 1.99 16 17 N -0.84 -45.46 10.86 21.82 0.24 -45.23 16 18 Si 0.98 39.43 29.57 68.60 2.03 41.46 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 20 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 22 C -0.14 -7.83 8.60 22.48 0.19 -7.63 16 23 C -0.14 -6.83 9.92 22.11 0.22 -6.61 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.34 10.10 8.29 -89.69 -0.74 9.36 16 32 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.05 1.48 6.77 -2.39 -0.02 1.46 16 37 H 0.13 4.80 5.36 -2.91 -0.02 4.79 16 38 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.28 14.02 8.30 -92.71 -0.77 13.25 16 40 H 0.11 6.20 6.23 -2.91 -0.02 6.18 16 41 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -60.43 334.01 2.44 -57.99 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.26 Total: 35.09 kcal Atomic # 6 Polarization: -58.23 SS G_CDS: 4.09 Total: -54.14 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -3.10 Total: -66.84 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.84 Total: -13.55 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -60.43 2.44 -57.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710996332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.877 kcal (2) G-P(sol) polarization free energy of solvation -60.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds