Wall clock time and date at job start Mon Mar 30 2020 07:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 115.54906 * 2 1 4 4 C 1.52993 * 117.51914 * 214.28848 * 2 1 3 5 5 C 1.52999 * 60.00217 * 252.52444 * 4 2 1 6 6 H 1.08996 * 117.51741 * 252.51839 * 5 4 2 7 7 C 1.52999 * 117.49832 * 107.49343 * 5 4 2 8 8 H 1.09001 * 115.55907 * 17.06444 * 7 5 4 9 9 C 1.52997 * 117.49919 * 162.75739 * 7 5 4 10 10 C 1.52998 * 117.49789 * 231.38212 * 7 5 4 11 11 H 1.09006 * 117.51839 * 359.97438 * 10 7 5 12 12 C 1.50699 * 117.50222 * 145.01929 * 10 7 5 13 13 O 1.21276 * 120.00086 * 337.46933 * 12 10 7 14 14 N 1.34780 * 119.99745 * 157.46612 * 12 10 7 15 15 C 1.46503 * 119.99751 * 185.28615 * 14 12 10 16 16 C 1.52994 * 109.47144 * 175.96640 * 15 14 12 17 17 C 1.50706 * 115.54828 * 64.32187 * 16 15 14 18 18 H 1.08003 * 119.99491 * 265.22137 * 17 16 15 19 19 C 1.37875 * 119.99934 * 85.22465 * 17 16 15 20 20 N 1.31513 * 120.00169 * 174.57190 * 19 17 16 21 21 Si 1.86800 * 120.00015 * 354.56844 * 19 17 16 22 22 H 1.48501 * 109.46981 * 86.70833 * 21 19 17 23 23 H 1.48498 * 109.46972 * 206.70507 * 21 19 17 24 24 H 1.48494 * 109.47238 * 326.70860 * 21 19 17 25 25 C 1.52999 * 117.50221 * 278.65059 * 16 15 14 26 26 C 1.53001 * 117.50152 * 209.99241 * 16 15 14 27 27 H 1.08996 * 109.47737 * 274.33510 * 1 2 3 28 28 H 1.09000 * 109.47199 * 34.33701 * 1 2 3 29 29 H 1.08997 * 109.47024 * 154.33106 * 1 2 3 30 30 H 1.09003 * 117.50068 * 145.02897 * 4 2 1 31 31 H 1.09007 * 117.50096 * 0.02562 * 4 2 1 32 32 H 1.08998 * 117.49693 * 359.97438 * 9 7 5 33 33 H 1.09000 * 117.51826 * 214.96922 * 9 7 5 34 34 H 0.97001 * 120.00357 * 5.29156 * 14 12 10 35 35 H 1.09004 * 109.46868 * 295.96768 * 15 14 12 36 36 H 1.09006 * 109.46966 * 55.96484 * 15 14 12 37 37 H 0.96997 * 120.00229 * 180.02562 * 20 19 17 38 38 H 1.09007 * 117.49515 * 0.02562 * 25 16 15 39 39 H 1.09002 * 117.50277 * 145.01624 * 25 16 15 40 40 H 1.09001 * 117.50044 * 214.98199 * 26 16 15 41 41 H 1.09002 * 117.49258 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7644 5 6 2.2364 -1.1207 0.7656 6 1 3.1710 -0.8745 1.2695 7 6 1.3587 -2.1559 1.4720 8 1 1.0288 -2.9920 0.8554 9 6 1.6469 -2.4371 2.9480 10 6 0.3971 -1.6498 2.5490 11 1 0.3898 -0.5794 2.7549 12 6 -0.9336 -2.3454 2.6763 13 8 -1.3878 -2.9623 1.7361 14 7 -1.6190 -2.2820 3.8351 15 6 -2.8547 -3.0519 3.9983 16 6 -3.3756 -2.8836 5.4269 17 6 -3.7945 -1.4863 5.8056 18 1 -3.0977 -0.8310 6.3071 19 6 -5.0671 -1.0447 5.5119 20 7 -5.4684 0.1339 5.9356 21 14 -6.2215 -2.1204 4.5121 22 1 -6.9451 -3.0469 5.4195 23 1 -7.2006 -1.2637 3.7960 24 1 -5.4367 -2.9058 3.5260 25 6 -2.7423 -3.7510 6.5166 26 6 -4.1642 -4.0462 6.0330 27 1 -0.3634 0.0777 1.0246 28 1 -0.3633 0.8486 -0.5797 29 1 -0.3633 -0.9262 -0.4451 30 1 3.1721 -0.8752 -1.2675 31 1 1.6120 -1.8587 -1.2679 32 1 2.4620 -1.8849 3.4157 33 1 1.5065 -3.4581 3.3029 34 1 -1.2942 -1.7266 4.5610 35 1 -3.6037 -2.6906 3.2935 36 1 -2.6540 -4.1060 3.8065 37 1 -6.3638 0.4444 5.7293 38 1 -1.9542 -4.4413 6.2157 39 1 -2.6288 -3.3112 7.5075 40 1 -4.9858 -3.8005 6.7059 41 1 -4.3123 -4.9308 5.4136 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717210042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:58 Heat of formation + Delta-G solvation = 27.638947 kcal Electronic energy + Delta-G solvation = -19936.279923 eV Core-core repulsion = 17011.230809 eV Total energy + Delta-G solvation = -2925.049113 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85225 -38.25949 -37.00400 -35.08948 -33.37240 -32.15051 -28.66584 -27.15132 -25.49714 -23.80471 -23.09429 -21.69487 -21.40711 -19.74345 -19.32055 -18.97321 -16.98304 -16.29581 -15.88910 -15.20450 -15.12677 -14.90005 -14.14206 -13.95543 -13.49830 -13.02863 -12.87981 -12.78714 -12.48732 -12.29738 -12.11351 -11.99511 -11.54492 -11.32258 -11.17447 -10.79681 -10.68852 -10.62614 -10.54757 -10.16981 -9.82842 -9.74031 -9.56676 -9.33340 -9.18981 -8.64711 -8.61311 -8.24949 -6.18056 -4.22252 2.99025 3.28104 3.37401 3.39719 3.42931 3.79717 3.93027 4.38326 4.51598 4.70091 4.78513 4.85585 5.03120 5.04931 5.10750 5.26099 5.32016 5.41551 5.47592 5.66323 5.69384 5.73832 5.83943 5.91253 6.00366 6.02702 6.06362 6.08437 6.11635 6.22410 6.26448 6.41557 6.42453 6.51960 6.70605 6.99105 7.06026 7.14933 7.66383 8.19564 8.39045 8.78226 8.82281 9.45556 10.93240 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025110 B = 0.004927 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.820244 B = 5681.376261 C = 6131.887093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.146 4.146 3 H 0.101 0.899 4 C -0.173 4.173 5 C -0.124 4.124 6 H 0.106 0.894 7 C -0.090 4.090 8 H 0.114 0.886 9 C -0.153 4.153 10 C -0.175 4.175 11 H 0.127 0.873 12 C 0.534 3.466 13 O -0.556 6.556 14 N -0.697 5.697 15 C 0.151 3.849 16 C -0.017 4.017 17 C -0.491 4.491 18 H 0.078 0.922 19 C 0.082 3.918 20 N -0.894 5.894 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.293 1.293 24 H -0.256 1.256 25 C -0.177 4.177 26 C -0.192 4.192 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.406 0.594 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.266 0.734 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.145 -2.932 -7.496 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.164 4.164 3 H 0.119 0.881 4 C -0.210 4.210 5 C -0.142 4.142 6 H 0.124 0.876 7 C -0.108 4.108 8 H 0.132 0.868 9 C -0.191 4.191 10 C -0.196 4.196 11 H 0.145 0.855 12 C 0.319 3.681 13 O -0.436 6.436 14 N -0.346 5.346 15 C 0.028 3.972 16 C -0.018 4.018 17 C -0.528 4.528 18 H 0.096 0.904 19 C -0.121 4.121 20 N -0.531 5.531 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.181 1.181 25 C -0.214 4.214 26 C -0.230 4.230 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.241 0.759 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.633 -3.247 -8.136 16.205 hybrid contribution -0.674 -0.129 -0.052 0.688 sum 12.959 -3.376 -8.189 15.696 Atomic orbital electron populations 1.21399 0.92247 1.01978 1.02526 1.22374 0.95922 0.93903 1.04217 0.88097 1.23125 1.02353 1.01974 0.93572 1.21827 0.99765 0.99104 0.93501 0.87609 1.21681 0.98649 0.99684 0.90834 0.86824 1.23052 0.97449 1.01136 0.97425 1.22313 0.89897 1.00571 1.06859 0.85517 1.19611 0.85178 0.80595 0.82692 1.90644 1.70039 1.44393 1.38479 1.45828 1.25294 1.47758 1.15735 1.21252 0.85099 0.93013 0.97848 1.19608 0.99835 0.93110 0.89266 1.20172 0.98747 0.94663 1.39255 0.90409 1.24938 0.97759 0.94779 0.94646 1.69888 1.19069 1.19284 1.44841 0.86952 0.80860 0.80694 0.81256 1.20124 1.21963 1.18067 1.22807 0.94629 1.03771 1.00196 1.22966 0.95297 0.99853 1.04883 0.91702 0.92672 0.92044 0.89022 0.88632 0.87989 0.88436 0.75924 0.91547 0.93835 0.92452 0.90949 0.89407 0.89094 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 8.97 37.16 0.33 -1.21 16 2 C -0.15 -1.54 6.39 -90.62 -0.58 -2.12 16 3 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.17 -1.69 9.90 -26.73 -0.26 -1.96 16 5 C -0.12 -1.28 5.87 -90.62 -0.53 -1.81 16 6 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 7 C -0.09 -1.10 4.76 -90.62 -0.43 -1.53 16 8 H 0.11 1.58 7.85 -51.93 -0.41 1.17 16 9 C -0.15 -1.71 9.95 -26.73 -0.27 -1.98 16 10 C -0.18 -2.39 4.20 -91.77 -0.39 -2.77 16 11 H 0.13 1.61 7.30 -51.93 -0.38 1.23 16 12 C 0.53 9.59 7.53 -10.98 -0.08 9.51 16 13 O -0.56 -11.86 16.51 5.56 0.09 -11.77 16 14 N -0.70 -13.06 5.47 -60.29 -0.33 -13.39 16 15 C 0.15 3.21 5.19 -4.04 -0.02 3.19 16 16 C -0.02 -0.37 0.86 -155.66 -0.13 -0.51 16 17 C -0.49 -12.81 9.12 -34.44 -0.31 -13.13 16 18 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 19 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 20 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 21 Si 0.87 21.33 25.26 -169.99 -4.29 17.04 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.26 -6.06 5.37 56.52 0.30 -5.76 16 25 C -0.18 -3.38 9.96 -26.70 -0.27 -3.65 16 26 C -0.19 -3.93 7.82 -26.70 -0.21 -4.14 16 27 H 0.06 0.88 5.95 -51.93 -0.31 0.57 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.85 7.90 -51.93 -0.41 0.44 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.41 7.13 8.32 -40.82 -0.34 6.79 16 35 H 0.07 1.57 5.93 -51.93 -0.31 1.27 16 36 H 0.04 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 39 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.09 1.96 7.65 -51.93 -0.40 1.56 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 333.47 15.07 5.03 5.03 Total: -1.00 -29.81 333.47 -8.83 -38.64 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.85 Total: 9.92 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -3.25 Total: -19.93 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.44 Total: -38.93 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.29 Total: 17.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.81 -8.83 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717210042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.282 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds