Wall clock time and date at job start Mon Mar 30 2020 07:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 115.54906 * 2 1 4 4 C 1.52993 * 117.51914 * 214.28848 * 2 1 3 5 5 C 1.52999 * 60.00217 * 252.52444 * 4 2 1 6 6 H 1.08996 * 117.51741 * 252.51839 * 5 4 2 7 7 C 1.52999 * 117.49832 * 107.49343 * 5 4 2 8 8 H 1.09001 * 115.55907 * 17.06444 * 7 5 4 9 9 C 1.52997 * 117.49919 * 162.75739 * 7 5 4 10 10 C 1.52998 * 117.49789 * 231.38212 * 7 5 4 11 11 H 1.09006 * 117.51839 * 359.97438 * 10 7 5 12 12 C 1.50699 * 117.50222 * 145.01929 * 10 7 5 13 13 O 1.21276 * 120.00086 * 337.46933 * 12 10 7 14 14 N 1.34780 * 119.99745 * 157.46612 * 12 10 7 15 15 C 1.46503 * 119.99751 * 185.28615 * 14 12 10 16 16 C 1.52994 * 109.47144 * 175.96640 * 15 14 12 17 17 C 1.50706 * 115.54828 * 64.32187 * 16 15 14 18 18 H 1.08003 * 119.99491 * 265.22137 * 17 16 15 19 19 C 1.37875 * 119.99934 * 85.22465 * 17 16 15 20 20 N 1.31513 * 120.00169 * 174.57190 * 19 17 16 21 21 Si 1.86800 * 120.00015 * 354.56844 * 19 17 16 22 22 H 1.48501 * 109.46981 * 86.70833 * 21 19 17 23 23 H 1.48498 * 109.46972 * 206.70507 * 21 19 17 24 24 H 1.48494 * 109.47238 * 326.70860 * 21 19 17 25 25 C 1.52999 * 117.50221 * 278.65059 * 16 15 14 26 26 C 1.53001 * 117.50152 * 209.99241 * 16 15 14 27 27 H 1.08996 * 109.47737 * 274.33510 * 1 2 3 28 28 H 1.09000 * 109.47199 * 34.33701 * 1 2 3 29 29 H 1.08997 * 109.47024 * 154.33106 * 1 2 3 30 30 H 1.09003 * 117.50068 * 145.02897 * 4 2 1 31 31 H 1.09007 * 117.50096 * 0.02562 * 4 2 1 32 32 H 1.08998 * 117.49693 * 359.97438 * 9 7 5 33 33 H 1.09000 * 117.51826 * 214.96922 * 9 7 5 34 34 H 0.97001 * 120.00357 * 5.29156 * 14 12 10 35 35 H 1.09004 * 109.46868 * 295.96768 * 15 14 12 36 36 H 1.09006 * 109.46966 * 55.96484 * 15 14 12 37 37 H 0.96997 * 120.00229 * 180.02562 * 20 19 17 38 38 H 1.09007 * 117.49515 * 0.02562 * 25 16 15 39 39 H 1.09002 * 117.50277 * 145.01624 * 25 16 15 40 40 H 1.09001 * 117.50044 * 214.98199 * 26 16 15 41 41 H 1.09002 * 117.49258 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7644 5 6 2.2364 -1.1207 0.7656 6 1 3.1710 -0.8745 1.2695 7 6 1.3587 -2.1559 1.4720 8 1 1.0288 -2.9920 0.8554 9 6 1.6469 -2.4371 2.9480 10 6 0.3971 -1.6498 2.5490 11 1 0.3898 -0.5794 2.7549 12 6 -0.9336 -2.3454 2.6763 13 8 -1.3878 -2.9623 1.7361 14 7 -1.6190 -2.2820 3.8351 15 6 -2.8547 -3.0519 3.9983 16 6 -3.3756 -2.8836 5.4269 17 6 -3.7945 -1.4863 5.8056 18 1 -3.0977 -0.8310 6.3071 19 6 -5.0671 -1.0447 5.5119 20 7 -5.4684 0.1339 5.9356 21 14 -6.2215 -2.1204 4.5121 22 1 -6.9451 -3.0469 5.4195 23 1 -7.2006 -1.2637 3.7960 24 1 -5.4367 -2.9058 3.5260 25 6 -2.7423 -3.7510 6.5166 26 6 -4.1642 -4.0462 6.0330 27 1 -0.3634 0.0777 1.0246 28 1 -0.3633 0.8486 -0.5797 29 1 -0.3633 -0.9262 -0.4451 30 1 3.1721 -0.8752 -1.2675 31 1 1.6120 -1.8587 -1.2679 32 1 2.4620 -1.8849 3.4157 33 1 1.5065 -3.4581 3.3029 34 1 -1.2942 -1.7266 4.5610 35 1 -3.6037 -2.6906 3.2935 36 1 -2.6540 -4.1060 3.8065 37 1 -6.3638 0.4444 5.7293 38 1 -1.9542 -4.4413 6.2157 39 1 -2.6288 -3.3112 7.5075 40 1 -4.9858 -3.8005 6.7059 41 1 -4.3123 -4.9308 5.4136 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717210042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:57 Heat of formation + Delta-G solvation = 10.077347 kcal Electronic energy + Delta-G solvation = -19937.041451 eV Core-core repulsion = 17011.230809 eV Total energy + Delta-G solvation = -2925.810642 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12057 -39.45349 -38.57177 -36.10719 -34.96011 -34.22731 -29.65075 -28.75807 -27.40888 -24.92297 -24.15395 -23.29682 -22.23586 -21.29816 -20.76438 -20.08662 -18.60123 -17.91497 -16.98316 -16.84505 -16.56869 -16.25309 -15.65936 -15.16168 -14.92877 -14.79065 -14.24218 -14.19774 -13.91946 -13.69891 -13.35124 -13.11443 -13.06311 -12.57707 -12.35654 -12.23192 -12.19258 -11.99791 -11.73536 -11.68300 -11.50998 -11.00839 -10.91390 -10.69488 -10.66353 -10.43094 -10.28104 -9.87139 -8.31866 -6.37241 1.32147 1.37557 1.46136 1.62190 2.20322 2.34446 2.68694 3.01446 3.03605 3.23599 3.62296 3.78045 3.86076 3.98556 4.03629 4.12639 4.30715 4.35705 4.38396 4.41504 4.45214 4.49695 4.56541 4.79985 4.86306 4.87713 4.90405 4.93173 4.98428 5.06560 5.08548 5.19746 5.26714 5.28913 5.36814 5.46914 5.47881 5.58610 5.68888 6.27250 6.68292 6.74988 7.31893 7.34208 8.82770 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025110 B = 0.004927 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.820244 B = 5681.376261 C = 6131.887093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.152 4.152 3 H 0.120 0.880 4 C -0.168 4.168 5 C -0.121 4.121 6 H 0.131 0.869 7 C -0.089 4.089 8 H 0.091 0.909 9 C -0.128 4.128 10 C -0.189 4.189 11 H 0.137 0.863 12 C 0.532 3.468 13 O -0.594 6.594 14 N -0.698 5.698 15 C 0.160 3.840 16 C -0.040 4.040 17 C -0.478 4.478 18 H 0.047 0.953 19 C 0.031 3.969 20 N -0.942 5.942 21 Si 0.922 3.078 22 H -0.262 1.262 23 H -0.302 1.302 24 H -0.246 1.246 25 C -0.149 4.149 26 C -0.192 4.192 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.096 0.904 34 H 0.411 0.589 35 H 0.036 0.964 36 H 0.055 0.945 37 H 0.264 0.736 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.453 -4.099 -7.667 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 H 0.138 0.862 4 C -0.205 4.205 5 C -0.139 4.139 6 H 0.149 0.851 7 C -0.108 4.108 8 H 0.109 0.891 9 C -0.165 4.165 10 C -0.209 4.209 11 H 0.155 0.845 12 C 0.320 3.680 13 O -0.476 6.476 14 N -0.347 5.347 15 C 0.036 3.964 16 C -0.042 4.042 17 C -0.516 4.516 18 H 0.065 0.935 19 C -0.168 4.168 20 N -0.582 5.582 21 Si 0.748 3.252 22 H -0.187 1.187 23 H -0.229 1.229 24 H -0.170 1.170 25 C -0.186 4.186 26 C -0.229 4.229 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.151 0.849 33 H 0.114 0.886 34 H 0.247 0.753 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.965 -4.431 -8.293 18.528 hybrid contribution -1.348 0.240 0.014 1.370 sum 14.617 -4.191 -8.279 17.313 Atomic orbital electron populations 1.21349 0.94238 1.01099 1.01379 1.22386 0.94390 0.95094 1.05088 0.86235 1.23180 1.02897 1.01032 0.93416 1.21904 1.00047 0.98137 0.93795 0.85141 1.21676 0.98294 0.99497 0.91352 0.89075 1.23204 0.96104 1.00910 0.96325 1.22221 0.88349 1.00872 1.09505 0.84514 1.20332 0.86262 0.79838 0.81574 1.90620 1.71253 1.46181 1.39559 1.45841 1.24702 1.47758 1.16392 1.20974 0.85364 0.93768 0.96291 1.19435 1.02610 0.91506 0.90611 1.20341 0.97674 0.96318 1.37253 0.93504 1.25631 0.99565 0.95729 0.95854 1.70009 1.19589 1.21306 1.47258 0.86167 0.79157 0.79465 0.80365 1.18673 1.22880 1.16980 1.22841 0.94674 1.02265 0.98846 1.23022 0.95737 0.99555 1.04633 0.93261 0.91933 0.94275 0.86717 0.89936 0.84884 0.88564 0.75310 0.94604 0.92671 0.92648 0.87957 0.89521 0.90340 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 8.97 71.98 0.65 -2.41 16 2 C -0.15 -2.89 6.39 -10.79 -0.07 -2.96 16 3 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.17 -2.92 9.90 30.59 0.30 -2.62 16 5 C -0.12 -2.16 5.87 -10.79 -0.06 -2.23 16 6 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 7 C -0.09 -2.04 4.76 -10.80 -0.05 -2.09 16 8 H 0.09 2.52 7.85 -2.39 -0.02 2.50 16 9 C -0.13 -2.49 9.95 30.59 0.30 -2.19 16 10 C -0.19 -4.90 4.20 -11.54 -0.05 -4.95 16 11 H 0.14 3.29 7.30 -2.38 -0.02 3.28 16 12 C 0.53 19.01 7.53 87.66 0.66 19.67 16 13 O -0.59 -25.68 16.51 -3.02 -0.05 -25.73 16 14 N -0.70 -25.81 5.47 -463.05 -2.53 -28.35 16 15 C 0.16 6.66 5.19 86.38 0.45 7.11 16 16 C -0.04 -1.73 0.86 -52.93 -0.05 -1.77 16 17 C -0.48 -25.24 9.12 25.60 0.23 -25.00 16 18 H 0.05 2.70 8.06 -2.91 -0.02 2.68 16 19 C 0.03 1.72 5.47 84.65 0.46 2.18 16 20 N -0.94 -57.08 13.96 21.45 0.30 -56.78 16 21 Si 0.92 44.26 25.26 68.60 1.73 45.99 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 24 H -0.25 -11.31 5.37 99.48 0.53 -10.78 16 25 C -0.15 -5.30 9.96 30.62 0.30 -4.99 16 26 C -0.19 -7.39 7.82 30.62 0.24 -7.15 16 27 H 0.05 1.35 5.95 -2.39 -0.01 1.33 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 1.11 7.90 -2.39 -0.02 1.09 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.65 8.05 -2.38 -0.02 1.63 16 32 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.41 14.24 8.32 -92.71 -0.77 13.47 16 35 H 0.04 1.70 5.93 -2.38 -0.01 1.69 16 36 H 0.06 2.16 8.10 -2.38 -0.02 2.14 16 37 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 39 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.08 3.23 7.65 -2.39 -0.02 3.21 16 41 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -66.12 333.47 2.84 -63.28 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.07 Total: 31.00 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 3.32 Total: -29.40 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -2.23 Total: -85.13 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.73 Total: 45.99 kcal Total: -66.12 2.84 -63.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717210042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.354 kcal (2) G-P(sol) polarization free energy of solvation -66.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds