Wall clock time and date at job start Mon Mar 30 2020 07:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 115.56242 * 2 1 4 4 C 1.52996 * 117.50256 * 214.31005 * 2 1 3 5 5 C 1.53001 * 60.00107 * 252.51007 * 4 2 1 6 6 H 1.08999 * 117.49907 * 252.48621 * 5 4 2 7 7 C 1.53003 * 117.50086 * 107.48641 * 5 4 2 8 8 H 1.09001 * 115.54813 * 325.72389 * 7 5 4 9 9 C 1.52995 * 117.49907 * 180.02562 * 7 5 4 10 10 C 1.52995 * 117.49420 * 111.39121 * 7 5 4 11 11 H 1.08996 * 117.50302 * 359.97438 * 10 7 5 12 12 C 1.50701 * 117.49505 * 214.97726 * 10 7 5 13 13 O 1.21285 * 120.00187 * 333.41304 * 12 10 7 14 14 N 1.34784 * 119.99782 * 153.41627 * 12 10 7 15 15 C 1.46497 * 119.99837 * 185.03928 * 14 12 10 16 16 C 1.52998 * 109.47304 * 177.97827 * 15 14 12 17 17 C 1.50706 * 115.54974 * 65.01770 * 16 15 14 18 18 H 1.07998 * 120.00197 * 264.84243 * 17 16 15 19 19 C 1.37883 * 119.99657 * 84.84703 * 17 16 15 20 20 N 1.31508 * 119.99684 * 185.22089 * 19 17 16 21 21 Si 1.86797 * 119.99918 * 5.22271 * 19 17 16 22 22 H 1.48494 * 109.47257 * 85.91089 * 21 19 17 23 23 H 1.48501 * 109.47073 * 205.91246 * 21 19 17 24 24 H 1.48503 * 109.47230 * 325.90956 * 21 19 17 25 25 C 1.53002 * 117.49771 * 279.35642 * 16 15 14 26 26 C 1.52994 * 117.50264 * 210.69604 * 16 15 14 27 27 H 1.08999 * 109.47246 * 274.31111 * 1 2 3 28 28 H 1.09003 * 109.47058 * 34.31299 * 1 2 3 29 29 H 1.09000 * 109.47186 * 154.30896 * 1 2 3 30 30 H 1.08997 * 117.50055 * 145.01942 * 4 2 1 31 31 H 1.08996 * 117.51726 * 359.97438 * 4 2 1 32 32 H 1.08995 * 117.50108 * 145.02152 * 9 7 5 33 33 H 1.09006 * 117.49972 * 359.97438 * 9 7 5 34 34 H 0.96992 * 119.99633 * 5.02996 * 14 12 10 35 35 H 1.09005 * 109.47138 * 297.97781 * 15 14 12 36 36 H 1.09001 * 109.47774 * 57.97378 * 15 14 12 37 37 H 0.97001 * 119.99969 * 179.97438 * 20 19 17 38 38 H 1.09007 * 117.49936 * 359.97438 * 25 16 15 39 39 H 1.08997 * 117.50293 * 145.02011 * 25 16 15 40 40 H 1.09006 * 117.50146 * 214.98197 * 26 16 15 41 41 H 1.09000 * 117.49833 * 359.96884 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 3.1716 -0.8754 1.2684 7 6 1.3588 -2.1561 1.4716 8 1 0.4240 -2.4022 0.9678 9 6 1.3583 -2.1557 3.0015 10 6 2.0653 -3.2768 2.2368 11 1 3.1553 -3.2769 2.2366 12 6 1.4152 -4.6364 2.2369 13 8 0.2146 -4.7345 2.0957 14 7 2.1680 -5.7433 2.3941 15 6 1.5536 -7.0686 2.2842 16 6 2.6282 -8.1446 2.4525 17 6 3.2837 -8.2020 3.8084 18 1 4.2154 -7.6836 3.9802 19 6 2.6938 -8.9165 4.8295 20 7 3.2098 -8.8833 6.0387 21 14 1.1619 -9.9318 4.4953 22 1 1.5565 -11.2752 4.0006 23 1 0.3803 -10.0761 5.7496 24 1 0.3309 -9.2511 3.4698 25 6 3.4938 -8.4752 1.2350 26 6 2.4275 -9.4662 1.7084 27 1 -0.3634 0.0773 1.0247 28 1 -0.3633 0.8488 -0.5793 29 1 -0.3633 -0.9261 -0.4455 30 1 3.1715 -0.8751 -1.2682 31 1 1.6116 -1.8588 -1.2680 32 1 0.4232 -2.4016 3.5046 33 1 1.9836 -1.4182 3.5048 34 1 3.1165 -5.6623 2.5799 35 1 0.7984 -7.1847 3.0616 36 1 1.0859 -7.1723 1.3051 37 1 2.7947 -9.3856 6.7571 38 1 3.2973 -7.9264 0.3138 39 1 4.5371 -8.7347 1.4145 40 1 2.7697 -10.3773 2.1993 41 1 1.5296 -9.5694 1.0991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717210049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:01 Heat of formation + Delta-G solvation = 24.488068 kcal Electronic energy + Delta-G solvation = -19595.314718 eV Core-core repulsion = 16670.128972 eV Total energy + Delta-G solvation = -2925.185746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78009 -38.30469 -37.07264 -35.17278 -33.38323 -32.15007 -28.67306 -27.22420 -25.52717 -23.94175 -22.93861 -21.74636 -21.45326 -19.70418 -19.35125 -19.04232 -17.06551 -16.36360 -15.98326 -15.15407 -14.95043 -14.59318 -14.37936 -13.89181 -13.35312 -13.16521 -13.10576 -12.78844 -12.61177 -12.42778 -12.14454 -12.08631 -11.64702 -11.24918 -11.16555 -11.04178 -10.84421 -10.59697 -10.50277 -10.21404 -9.89045 -9.72659 -9.58945 -9.27975 -9.20806 -8.71345 -8.52943 -8.27198 -6.17493 -4.21871 2.82031 3.27950 3.38141 3.42441 3.48952 3.71558 4.19088 4.39079 4.46499 4.59599 4.78763 4.87458 4.96474 5.09992 5.12672 5.17749 5.22017 5.25556 5.41378 5.64419 5.66341 5.66855 5.68463 5.78997 5.88200 5.97395 5.99976 6.05835 6.10756 6.15774 6.24103 6.28314 6.40586 6.52197 6.69006 6.98214 7.05642 7.15535 7.66450 8.20503 8.39494 8.79495 8.82786 9.45963 10.93802 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030363 B = 0.004194 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.946402 B = 6675.213734 C = 6895.728924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.148 4.148 3 H 0.102 0.898 4 C -0.174 4.174 5 C -0.121 4.121 6 H 0.105 0.895 7 C -0.090 4.090 8 H 0.115 0.885 9 C -0.141 4.141 10 C -0.182 4.182 11 H 0.119 0.881 12 C 0.535 3.465 13 O -0.562 6.562 14 N -0.698 5.698 15 C 0.157 3.843 16 C -0.015 4.015 17 C -0.492 4.492 18 H 0.078 0.922 19 C 0.081 3.919 20 N -0.894 5.894 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.259 1.259 25 C -0.178 4.178 26 C -0.195 4.195 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.405 0.595 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.266 0.734 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 14.453 -10.696 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.167 4.167 3 H 0.121 0.879 4 C -0.211 4.211 5 C -0.139 4.139 6 H 0.123 0.877 7 C -0.108 4.108 8 H 0.133 0.867 9 C -0.178 4.178 10 C -0.203 4.203 11 H 0.137 0.863 12 C 0.321 3.679 13 O -0.442 6.442 14 N -0.346 5.346 15 C 0.033 3.967 16 C -0.016 4.016 17 C -0.529 4.529 18 H 0.096 0.904 19 C -0.122 4.122 20 N -0.530 5.530 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.183 1.183 25 C -0.215 4.215 26 C -0.233 4.233 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.240 0.760 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.397 14.271 -10.606 17.941 hybrid contribution -0.159 -0.780 0.111 0.804 sum -2.557 13.491 -10.495 17.282 Atomic orbital electron populations 1.21356 0.92791 1.01788 1.02092 1.22341 0.95594 0.94114 1.04611 0.87940 1.23116 1.02555 1.01456 0.93954 1.21844 0.99910 0.98559 0.93607 0.87670 1.21720 0.99642 0.95628 0.93839 0.86722 1.22966 1.02418 0.98563 0.93894 1.22292 0.99911 0.89406 1.08688 0.86306 1.19561 0.86725 0.85070 0.76507 1.90639 1.14691 1.87317 1.51525 1.45775 1.13011 1.05484 1.70303 1.21116 0.95395 0.80953 0.99188 1.19624 0.96220 0.92189 0.93594 1.20181 1.08803 1.32951 0.90992 0.90377 1.24962 0.96777 0.95910 0.94593 1.69888 1.40926 1.41421 1.00791 0.86860 0.83682 0.81102 0.77608 1.20287 1.22110 1.18299 1.22836 0.96526 1.04085 0.98064 1.22975 0.99927 0.95417 1.04953 0.91888 0.92492 0.92383 0.88836 0.88634 0.87889 0.88025 0.76005 0.91893 0.93837 0.92444 0.90893 0.89404 0.89138 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.04 37.15 0.34 -0.74 16 2 C -0.15 -1.31 6.41 -90.62 -0.58 -1.89 16 3 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.17 -1.62 9.90 -26.73 -0.26 -1.88 16 5 C -0.12 -1.21 5.85 -90.62 -0.53 -1.74 16 6 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 7 C -0.09 -1.10 4.70 -90.62 -0.43 -1.52 16 8 H 0.11 1.58 6.97 -51.93 -0.36 1.22 16 9 C -0.14 -1.74 9.85 -26.72 -0.26 -2.01 16 10 C -0.18 -2.54 5.91 -91.76 -0.54 -3.08 16 11 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 12 C 0.54 9.89 7.58 -10.98 -0.08 9.80 16 13 O -0.56 -12.20 16.46 5.55 0.09 -12.11 16 14 N -0.70 -13.34 5.47 -60.29 -0.33 -13.67 16 15 C 0.16 3.38 5.19 -4.04 -0.02 3.36 16 16 C -0.02 -0.33 0.84 -155.66 -0.13 -0.46 16 17 C -0.49 -12.96 9.21 -34.44 -0.32 -13.28 16 18 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 19 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 20 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 21 Si 0.88 21.55 24.73 -169.99 -4.20 17.35 16 22 H -0.28 -6.60 7.10 56.52 0.40 -6.20 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.26 -6.14 6.03 56.52 0.34 -5.80 16 25 C -0.18 -3.42 9.96 -26.69 -0.27 -3.68 16 26 C -0.19 -4.02 7.53 -26.70 -0.20 -4.22 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.55 7.40 -51.93 -0.38 0.16 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 32 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.41 7.21 8.36 -40.82 -0.34 6.86 16 35 H 0.06 1.51 6.96 -51.93 -0.36 1.15 16 36 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 40 H 0.09 1.95 7.09 -51.93 -0.37 1.58 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -30.31 337.13 -8.90 -39.21 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.92 Total: 9.02 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -3.39 Total: -19.19 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.44 Total: -39.36 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.20 Total: 17.35 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.31 -8.90 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717210049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.698 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds