Wall clock time and date at job start Mon Mar 30 2020 07:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 115.56242 * 2 1 4 4 C 1.52996 * 117.50256 * 214.31005 * 2 1 3 5 5 C 1.53001 * 60.00107 * 252.51007 * 4 2 1 6 6 H 1.08999 * 117.49907 * 252.48621 * 5 4 2 7 7 C 1.53003 * 117.50086 * 107.48641 * 5 4 2 8 8 H 1.09001 * 115.54813 * 325.72389 * 7 5 4 9 9 C 1.52995 * 117.49907 * 180.02562 * 7 5 4 10 10 C 1.52995 * 117.49420 * 111.39121 * 7 5 4 11 11 H 1.08996 * 117.50302 * 359.97438 * 10 7 5 12 12 C 1.50701 * 117.49505 * 214.97726 * 10 7 5 13 13 O 1.21285 * 120.00187 * 333.41304 * 12 10 7 14 14 N 1.34784 * 119.99782 * 153.41627 * 12 10 7 15 15 C 1.46497 * 119.99837 * 185.03928 * 14 12 10 16 16 C 1.52998 * 109.47304 * 177.97827 * 15 14 12 17 17 C 1.50706 * 115.54974 * 65.01770 * 16 15 14 18 18 H 1.07998 * 120.00197 * 264.84243 * 17 16 15 19 19 C 1.37883 * 119.99657 * 84.84703 * 17 16 15 20 20 N 1.31508 * 119.99684 * 185.22089 * 19 17 16 21 21 Si 1.86797 * 119.99918 * 5.22271 * 19 17 16 22 22 H 1.48494 * 109.47257 * 85.91089 * 21 19 17 23 23 H 1.48501 * 109.47073 * 205.91246 * 21 19 17 24 24 H 1.48503 * 109.47230 * 325.90956 * 21 19 17 25 25 C 1.53002 * 117.49771 * 279.35642 * 16 15 14 26 26 C 1.52994 * 117.50264 * 210.69604 * 16 15 14 27 27 H 1.08999 * 109.47246 * 274.31111 * 1 2 3 28 28 H 1.09003 * 109.47058 * 34.31299 * 1 2 3 29 29 H 1.09000 * 109.47186 * 154.30896 * 1 2 3 30 30 H 1.08997 * 117.50055 * 145.01942 * 4 2 1 31 31 H 1.08996 * 117.51726 * 359.97438 * 4 2 1 32 32 H 1.08995 * 117.50108 * 145.02152 * 9 7 5 33 33 H 1.09006 * 117.49972 * 359.97438 * 9 7 5 34 34 H 0.96992 * 119.99633 * 5.02996 * 14 12 10 35 35 H 1.09005 * 109.47138 * 297.97781 * 15 14 12 36 36 H 1.09001 * 109.47774 * 57.97378 * 15 14 12 37 37 H 0.97001 * 119.99969 * 179.97438 * 20 19 17 38 38 H 1.09007 * 117.49936 * 359.97438 * 25 16 15 39 39 H 1.08997 * 117.50293 * 145.02011 * 25 16 15 40 40 H 1.09006 * 117.50146 * 214.98197 * 26 16 15 41 41 H 1.09000 * 117.49833 * 359.96884 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 3.1716 -0.8754 1.2684 7 6 1.3588 -2.1561 1.4716 8 1 0.4240 -2.4022 0.9678 9 6 1.3583 -2.1557 3.0015 10 6 2.0653 -3.2768 2.2368 11 1 3.1553 -3.2769 2.2366 12 6 1.4152 -4.6364 2.2369 13 8 0.2146 -4.7345 2.0957 14 7 2.1680 -5.7433 2.3941 15 6 1.5536 -7.0686 2.2842 16 6 2.6282 -8.1446 2.4525 17 6 3.2837 -8.2020 3.8084 18 1 4.2154 -7.6836 3.9802 19 6 2.6938 -8.9165 4.8295 20 7 3.2098 -8.8833 6.0387 21 14 1.1619 -9.9318 4.4953 22 1 1.5565 -11.2752 4.0006 23 1 0.3803 -10.0761 5.7496 24 1 0.3309 -9.2511 3.4698 25 6 3.4938 -8.4752 1.2350 26 6 2.4275 -9.4662 1.7084 27 1 -0.3634 0.0773 1.0247 28 1 -0.3633 0.8488 -0.5793 29 1 -0.3633 -0.9261 -0.4455 30 1 3.1715 -0.8751 -1.2682 31 1 1.6116 -1.8588 -1.2680 32 1 0.4232 -2.4016 3.5046 33 1 1.9836 -1.4182 3.5048 34 1 3.1165 -5.6623 2.5799 35 1 0.7984 -7.1847 3.0616 36 1 1.0859 -7.1723 1.3051 37 1 2.7947 -9.3856 6.7571 38 1 3.2973 -7.9264 0.3138 39 1 4.5371 -8.7347 1.4145 40 1 2.7697 -10.3773 2.1993 41 1 1.5296 -9.5694 1.0991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717210049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:00 Heat of formation + Delta-G solvation = 6.598270 kcal Electronic energy + Delta-G solvation = -19596.090478 eV Core-core repulsion = 16670.128972 eV Total energy + Delta-G solvation = -2925.961506 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09449 -39.42911 -38.62210 -36.21775 -34.99583 -34.23895 -29.38561 -28.84742 -27.46917 -25.04324 -24.09010 -23.34902 -22.21245 -21.30219 -20.70849 -20.15675 -18.62918 -18.02709 -17.08644 -16.92622 -16.30448 -15.99478 -15.78447 -15.25947 -14.81034 -14.64344 -14.35782 -14.02998 -13.91993 -13.77423 -13.44417 -13.17646 -13.11240 -12.71852 -12.35328 -12.21493 -12.11158 -12.02285 -11.88005 -11.58904 -11.57928 -11.07732 -10.99961 -10.68923 -10.66221 -10.41480 -10.21968 -9.90503 -8.32146 -6.38017 1.32081 1.37801 1.47089 1.48618 2.22972 2.34837 2.65319 3.02664 3.21064 3.25765 3.57000 3.74729 3.89011 3.97007 4.01142 4.20318 4.23429 4.33168 4.33555 4.38635 4.40464 4.49919 4.51715 4.77123 4.84483 4.85660 4.92107 4.97900 4.99176 5.03626 5.07108 5.21516 5.22383 5.27569 5.38329 5.46485 5.48532 5.57320 5.67935 6.26570 6.67341 6.73812 7.30586 7.33207 8.82402 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030363 B = 0.004194 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.946402 B = 6675.213734 C = 6895.728924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.140 4.140 3 H 0.122 0.878 4 C -0.176 4.176 5 C -0.128 4.128 6 H 0.121 0.879 7 C -0.076 4.076 8 H 0.094 0.906 9 C -0.135 4.135 10 C -0.193 4.193 11 H 0.142 0.858 12 C 0.530 3.470 13 O -0.599 6.599 14 N -0.698 5.698 15 C 0.166 3.834 16 C -0.040 4.040 17 C -0.480 4.480 18 H 0.047 0.953 19 C 0.028 3.972 20 N -0.942 5.942 21 Si 0.929 3.071 22 H -0.263 1.263 23 H -0.303 1.303 24 H -0.247 1.247 25 C -0.150 4.150 26 C -0.194 4.194 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.411 0.589 35 H 0.031 0.969 36 H 0.055 0.945 37 H 0.265 0.735 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 15.693 -12.726 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.158 4.158 3 H 0.140 0.860 4 C -0.213 4.213 5 C -0.146 4.146 6 H 0.139 0.861 7 C -0.094 4.094 8 H 0.112 0.888 9 C -0.172 4.172 10 C -0.213 4.213 11 H 0.160 0.840 12 C 0.319 3.681 13 O -0.482 6.482 14 N -0.347 5.347 15 C 0.041 3.959 16 C -0.041 4.041 17 C -0.518 4.518 18 H 0.065 0.935 19 C -0.171 4.171 20 N -0.581 5.581 21 Si 0.755 3.245 22 H -0.188 1.188 23 H -0.230 1.230 24 H -0.170 1.170 25 C -0.187 4.187 26 C -0.232 4.232 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.149 0.851 34 H 0.247 0.753 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.067 15.516 -12.665 20.135 hybrid contribution -0.232 -1.109 0.717 1.341 sum -2.299 14.407 -11.947 18.857 Atomic orbital electron populations 1.21382 0.93135 1.01786 1.02001 1.22445 0.95399 0.94626 1.03340 0.86046 1.23170 1.03187 1.01470 0.93459 1.21861 1.00296 0.98524 0.93902 0.86076 1.21676 0.98900 0.95034 0.93827 0.88754 1.23070 1.01847 0.98030 0.94271 1.22308 1.00954 0.87155 1.10932 0.83982 1.20322 0.86316 0.86377 0.75095 1.90614 1.16444 1.88020 1.53138 1.45789 1.13332 1.05092 1.70465 1.20852 0.94515 0.81918 0.98603 1.19442 0.97954 0.93968 0.92734 1.20354 1.07407 1.31012 0.93003 0.93509 1.25690 0.99553 0.97396 0.94433 1.70014 1.42903 1.43355 1.01861 0.86054 0.80696 0.80429 0.77351 1.18770 1.23034 1.17048 1.22871 0.96081 1.02401 0.97319 1.23043 1.01443 0.94157 1.04555 0.92281 0.91028 0.93670 0.87270 0.89815 0.89656 0.85095 0.75298 0.95082 0.92644 0.92635 0.87990 0.89344 0.90127 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.04 71.98 0.65 -1.35 16 2 C -0.14 -2.10 6.41 -10.80 -0.07 -2.17 16 3 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 4 C -0.18 -2.86 9.90 30.59 0.30 -2.56 16 5 C -0.13 -2.21 5.85 -10.79 -0.06 -2.27 16 6 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 7 C -0.08 -1.75 4.70 -10.80 -0.05 -1.80 16 8 H 0.09 2.60 6.97 -2.39 -0.02 2.58 16 9 C -0.13 -3.15 9.85 30.60 0.30 -2.85 16 10 C -0.19 -5.13 5.91 -11.53 -0.07 -5.19 16 11 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 12 C 0.53 19.45 7.58 87.66 0.66 20.12 16 13 O -0.60 -26.34 16.46 -3.04 -0.05 -26.39 16 14 N -0.70 -26.36 5.47 -463.05 -2.53 -28.89 16 15 C 0.17 6.99 5.19 86.38 0.45 7.44 16 16 C -0.04 -1.72 0.84 -52.93 -0.04 -1.76 16 17 C -0.48 -25.53 9.21 25.60 0.24 -25.30 16 18 H 0.05 2.72 8.06 -2.91 -0.02 2.69 16 19 C 0.03 1.56 5.47 84.66 0.46 2.02 16 20 N -0.94 -57.38 13.96 21.45 0.30 -57.08 16 21 Si 0.93 44.53 24.73 68.60 1.70 46.22 16 22 H -0.26 -11.89 7.10 99.48 0.71 -11.18 16 23 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 24 H -0.25 -11.26 6.03 99.48 0.60 -10.66 16 25 C -0.15 -5.32 9.96 30.62 0.30 -5.02 16 26 C -0.19 -7.50 7.53 30.62 0.23 -7.27 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.04 0.82 7.40 -2.39 -0.02 0.81 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.56 8.05 -2.39 -0.02 1.54 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.13 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.41 14.37 8.36 -92.71 -0.78 13.60 16 35 H 0.03 1.49 6.96 -2.38 -0.02 1.48 16 36 H 0.06 2.20 8.09 -2.39 -0.02 2.18 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 39 H 0.09 3.15 8.14 -2.39 -0.02 3.14 16 40 H 0.08 3.29 7.09 -2.38 -0.02 3.27 16 41 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -66.68 337.13 2.84 -63.84 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.12 Total: 30.26 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 3.31 Total: -27.96 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -2.23 Total: -85.97 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.70 Total: 46.22 kcal Total: -66.68 2.84 -63.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717210049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.442 kcal (2) G-P(sol) polarization free energy of solvation -66.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds