Wall clock time and date at job start Mon Mar 30 2020 07:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 115.55983 * 2 1 4 4 C 1.53076 * 117.51306 * 214.28795 * 2 1 3 5 5 C 1.52999 * 59.98395 * 252.52596 * 4 2 1 6 6 H 1.08998 * 117.50072 * 252.49852 * 5 4 2 7 7 C 1.53002 * 117.49840 * 107.50278 * 5 4 2 8 8 H 1.08998 * 115.56135 * 278.77074 * 7 5 4 9 9 C 1.53076 * 117.51406 * 133.05955 * 7 5 4 10 10 C 1.53001 * 59.98532 * 252.52453 * 9 7 5 11 11 H 1.09000 * 117.50462 * 252.49870 * 10 9 7 12 12 C 1.50704 * 117.49867 * 107.50041 * 10 9 7 13 13 O 1.21279 * 119.99622 * 353.54019 * 12 10 9 14 14 N 1.34774 * 120.00139 * 173.53960 * 12 10 9 15 15 C 1.47745 * 125.82014 * 359.90781 * 14 12 10 16 16 C 1.54910 * 104.84175 * 155.83175 * 15 14 12 17 17 C 1.55156 * 101.58214 * 37.09125 * 16 15 14 18 18 H 1.09002 * 110.71849 * 82.86252 * 17 16 15 19 19 C 1.50699 * 110.72543 * 206.13635 * 17 16 15 20 20 H 1.08000 * 119.99897 * 113.52416 * 19 17 16 21 21 C 1.37875 * 119.99868 * 293.52659 * 19 17 16 22 22 N 1.31511 * 120.00274 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 119.99957 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47379 * 59.99839 * 23 21 19 25 25 H 1.48504 * 109.47237 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47100 * 299.99607 * 23 21 19 27 27 C 1.47022 * 125.65112 * 180.02562 * 14 12 10 28 28 H 1.08993 * 109.47363 * 274.31507 * 1 2 3 29 29 H 1.08997 * 109.47029 * 34.31843 * 1 2 3 30 30 H 1.09005 * 109.46883 * 154.31144 * 1 2 3 31 31 H 1.09006 * 117.48800 * 145.04385 * 4 2 1 32 32 H 1.08994 * 117.51534 * 0.02562 * 4 2 1 33 33 H 1.09001 * 117.48941 * 145.04395 * 9 7 5 34 34 H 1.08999 * 117.53397 * 359.97438 * 9 7 5 35 35 H 1.08996 * 110.29241 * 37.02895 * 15 14 12 36 36 H 1.09000 * 110.52648 * 274.75257 * 15 14 12 37 37 H 1.09001 * 111.00224 * 279.02128 * 16 15 14 38 38 H 1.08999 * 111.04533 * 155.18138 * 16 15 14 39 39 H 0.96998 * 120.00277 * 180.02562 * 22 21 19 40 40 H 1.09006 * 109.88226 * 61.60301 * 27 14 12 41 41 H 1.08997 * 109.88169 * 300.59724 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1217 -0.7648 5 6 2.2364 -1.1209 0.7652 6 1 3.1712 -0.8750 1.2688 7 6 1.3587 -2.1560 1.4717 8 1 0.3028 -1.8989 1.5552 9 6 1.9862 -2.9487 2.6211 10 6 1.7133 -3.6320 1.2796 11 1 0.8906 -4.3457 1.2364 12 6 2.9003 -3.9549 0.4090 13 8 4.0062 -3.5700 0.7246 14 7 2.7328 -4.6713 -0.7202 15 6 1.4501 -5.2038 -1.2240 16 6 1.6610 -5.3691 -2.7498 17 6 3.1382 -5.8395 -2.8109 18 1 3.2085 -6.9133 -2.6374 19 6 3.7615 -5.4694 -4.1321 20 1 4.5590 -4.7420 -4.1680 21 6 3.3136 -6.0593 -5.2949 22 7 2.3428 -6.9454 -5.2511 23 14 4.0857 -5.6001 -6.9327 24 1 5.5355 -5.9200 -6.9036 25 1 3.4314 -6.3694 -8.0215 26 1 3.9043 -4.1463 -7.1751 27 6 3.7986 -5.0562 -1.6568 28 1 -0.3634 0.0773 1.0247 29 1 -0.3633 0.8487 -0.5794 30 1 -0.3633 -0.9261 -0.4455 31 1 3.1725 -0.8758 -1.2677 32 1 1.6124 -1.8594 -1.2683 33 1 1.3426 -3.2127 3.4604 34 1 3.0243 -2.7334 2.8740 35 1 0.6439 -4.4973 -1.0269 36 1 1.2297 -6.1676 -0.7650 37 1 1.5319 -4.4185 -3.2672 38 1 0.9924 -6.1273 -3.1574 39 1 2.0279 -7.3607 -6.0692 40 1 4.5279 -5.6877 -1.1494 41 1 4.2889 -4.1644 -2.0472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717211434.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:47 Heat of formation + Delta-G solvation = 3.855919 kcal Electronic energy + Delta-G solvation = -20427.305438 eV Core-core repulsion = 17501.225015 eV Total energy + Delta-G solvation = -2926.080423 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97297 -38.13662 -36.66733 -35.04998 -32.99053 -30.33277 -28.51105 -28.40630 -25.68815 -24.03726 -23.21441 -21.82452 -21.09108 -19.77843 -19.46446 -18.03608 -16.83053 -16.49110 -15.85959 -15.17121 -14.81523 -14.64935 -14.47175 -13.53622 -13.30926 -13.04121 -12.63666 -12.52797 -12.50476 -12.34778 -11.74027 -11.36698 -11.31322 -11.28336 -11.11385 -11.02480 -10.79783 -10.74405 -10.52370 -10.48841 -9.81332 -9.66779 -9.55227 -9.47052 -9.19854 -8.99038 -8.48200 -7.91980 -6.10937 -4.13918 2.87559 3.29075 3.33517 3.36491 3.56754 3.79456 4.05809 4.38634 4.61438 4.78468 4.85726 4.94666 5.12955 5.21261 5.24007 5.31082 5.36852 5.45745 5.64376 5.73032 5.75349 5.81845 5.91353 5.94314 5.98943 6.06771 6.10023 6.21526 6.28517 6.31632 6.34633 6.39747 6.67617 6.88095 7.01292 7.13196 7.44983 7.70124 7.88017 8.21580 8.29052 8.74432 8.87940 9.50856 10.99091 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.005241 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.787890 B = 5340.986335 C = 5795.192196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.155 4.155 3 H 0.100 0.900 4 C -0.162 4.162 5 C -0.118 4.118 6 H 0.107 0.893 7 C -0.093 4.093 8 H 0.113 0.887 9 C -0.145 4.145 10 C -0.182 4.182 11 H 0.117 0.883 12 C 0.557 3.443 13 O -0.554 6.554 14 N -0.606 5.606 15 C 0.093 3.907 16 C -0.109 4.109 17 C 0.045 3.955 18 H 0.041 0.959 19 C -0.514 4.514 20 H 0.058 0.942 21 C 0.066 3.934 22 N -0.889 5.889 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.112 3.888 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.262 0.738 40 H 0.046 0.954 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.398 8.668 11.347 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.173 4.173 3 H 0.118 0.882 4 C -0.199 4.199 5 C -0.136 4.136 6 H 0.125 0.875 7 C -0.112 4.112 8 H 0.131 0.869 9 C -0.182 4.182 10 C -0.203 4.203 11 H 0.135 0.865 12 C 0.345 3.655 13 O -0.434 6.434 14 N -0.338 5.338 15 C -0.030 4.030 16 C -0.148 4.148 17 C 0.026 3.974 18 H 0.060 0.940 19 C -0.552 4.552 20 H 0.076 0.924 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.009 4.009 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.908 8.774 11.444 15.583 hybrid contribution 0.289 0.010 -1.030 1.070 sum -5.620 8.784 10.413 14.737 Atomic orbital electron populations 1.21339 0.93111 1.01976 1.01383 1.22391 0.95222 0.94296 1.05408 0.88154 1.23079 1.02413 1.00695 0.93683 1.21749 0.99715 0.98080 0.94089 0.87536 1.21768 0.99305 0.89151 1.00955 0.86889 1.23043 1.02909 1.01782 0.90464 1.22340 1.00117 0.97436 1.00453 0.86507 1.19021 0.88803 0.77539 0.80138 1.90623 1.26319 1.54048 1.72368 1.48647 1.10839 1.52135 1.22229 1.22576 0.85151 0.97224 0.98004 1.22754 1.00886 1.01552 0.89601 1.19707 0.90903 0.95255 0.91567 0.94047 1.20989 1.19295 1.24311 0.90650 0.92370 1.24940 0.94915 0.94700 0.99091 1.69927 1.27195 1.27417 1.28189 0.86637 0.79565 0.78583 0.83127 1.20178 1.21269 1.20211 1.22298 0.89510 0.99079 0.90024 0.92377 0.92385 0.92354 0.88957 0.88588 0.88247 0.87526 0.92330 0.92444 0.92245 0.90115 0.92835 0.93522 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.76 37.16 0.33 -0.88 16 2 C -0.16 -1.82 6.41 -90.58 -0.58 -2.40 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 4 C -0.16 -2.37 8.99 -26.69 -0.24 -2.61 16 5 C -0.12 -1.59 4.81 -90.62 -0.44 -2.02 16 6 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 7 C -0.09 -1.14 5.51 -90.58 -0.50 -1.64 16 8 H 0.11 1.17 6.64 -51.93 -0.34 0.82 16 9 C -0.14 -1.75 9.77 -26.69 -0.26 -2.01 16 10 C -0.18 -2.57 5.39 -91.77 -0.49 -3.07 16 11 H 0.12 1.45 7.51 -51.93 -0.39 1.06 16 12 C 0.56 10.29 6.09 -10.98 -0.07 10.23 16 13 O -0.55 -11.90 16.15 5.56 0.09 -11.81 16 14 N -0.61 -11.71 3.34 -170.26 -0.57 -12.27 16 15 C 0.09 1.63 6.44 -2.35 -0.02 1.62 16 16 C -0.11 -2.33 5.95 -24.58 -0.15 -2.48 16 17 C 0.04 1.07 2.78 -89.94 -0.25 0.82 16 18 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 19 C -0.51 -13.63 8.47 -34.44 -0.29 -13.92 16 20 H 0.06 1.54 7.53 -52.49 -0.40 1.15 16 21 C 0.07 1.76 5.36 -17.82 -0.10 1.66 16 22 N -0.89 -24.38 12.50 55.43 0.69 -23.69 16 23 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.11 2.47 6.45 -3.07 -0.02 2.45 16 28 H 0.06 0.51 7.73 -51.93 -0.40 0.11 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.61 7.88 -51.93 -0.41 0.20 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.10 1.52 8.05 -51.93 -0.42 1.10 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.11 1.45 7.68 -51.93 -0.40 1.05 16 35 H 0.06 0.89 7.58 -51.93 -0.39 0.49 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 38 H 0.08 1.81 7.77 -51.93 -0.40 1.41 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.38 7.63 -51.93 -0.40 0.98 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -28.73 331.49 -9.77 -38.50 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.88 Total: 2.78 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -3.07 Total: -14.24 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.12 Total: -35.97 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.73 -9.77 -38.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717211434.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.352 kcal (2) G-P(sol) polarization free energy of solvation -28.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds