Wall clock time and date at job start Mon Mar 30 2020 07:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 115.55983 * 2 1 4 4 C 1.53076 * 117.51306 * 214.28795 * 2 1 3 5 5 C 1.52999 * 59.98395 * 252.52596 * 4 2 1 6 6 H 1.08998 * 117.50072 * 252.49852 * 5 4 2 7 7 C 1.53002 * 117.49840 * 107.50278 * 5 4 2 8 8 H 1.08998 * 115.56135 * 278.77074 * 7 5 4 9 9 C 1.53076 * 117.51406 * 133.05955 * 7 5 4 10 10 C 1.53001 * 59.98532 * 252.52453 * 9 7 5 11 11 H 1.09000 * 117.50462 * 252.49870 * 10 9 7 12 12 C 1.50704 * 117.49867 * 107.50041 * 10 9 7 13 13 O 1.21279 * 119.99622 * 353.54019 * 12 10 9 14 14 N 1.34774 * 120.00139 * 173.53960 * 12 10 9 15 15 C 1.47745 * 125.82014 * 359.90781 * 14 12 10 16 16 C 1.54910 * 104.84175 * 155.83175 * 15 14 12 17 17 C 1.55156 * 101.58214 * 37.09125 * 16 15 14 18 18 H 1.09002 * 110.71849 * 82.86252 * 17 16 15 19 19 C 1.50699 * 110.72543 * 206.13635 * 17 16 15 20 20 H 1.08000 * 119.99897 * 113.52416 * 19 17 16 21 21 C 1.37875 * 119.99868 * 293.52659 * 19 17 16 22 22 N 1.31511 * 120.00274 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 119.99957 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47379 * 59.99839 * 23 21 19 25 25 H 1.48504 * 109.47237 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47100 * 299.99607 * 23 21 19 27 27 C 1.47022 * 125.65112 * 180.02562 * 14 12 10 28 28 H 1.08993 * 109.47363 * 274.31507 * 1 2 3 29 29 H 1.08997 * 109.47029 * 34.31843 * 1 2 3 30 30 H 1.09005 * 109.46883 * 154.31144 * 1 2 3 31 31 H 1.09006 * 117.48800 * 145.04385 * 4 2 1 32 32 H 1.08994 * 117.51534 * 0.02562 * 4 2 1 33 33 H 1.09001 * 117.48941 * 145.04395 * 9 7 5 34 34 H 1.08999 * 117.53397 * 359.97438 * 9 7 5 35 35 H 1.08996 * 110.29241 * 37.02895 * 15 14 12 36 36 H 1.09000 * 110.52648 * 274.75257 * 15 14 12 37 37 H 1.09001 * 111.00224 * 279.02128 * 16 15 14 38 38 H 1.08999 * 111.04533 * 155.18138 * 16 15 14 39 39 H 0.96998 * 120.00277 * 180.02562 * 22 21 19 40 40 H 1.09006 * 109.88226 * 61.60301 * 27 14 12 41 41 H 1.08997 * 109.88169 * 300.59724 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1217 -0.7648 5 6 2.2364 -1.1209 0.7652 6 1 3.1712 -0.8750 1.2688 7 6 1.3587 -2.1560 1.4717 8 1 0.3028 -1.8989 1.5552 9 6 1.9862 -2.9487 2.6211 10 6 1.7133 -3.6320 1.2796 11 1 0.8906 -4.3457 1.2364 12 6 2.9003 -3.9549 0.4090 13 8 4.0062 -3.5700 0.7246 14 7 2.7328 -4.6713 -0.7202 15 6 1.4501 -5.2038 -1.2240 16 6 1.6610 -5.3691 -2.7498 17 6 3.1382 -5.8395 -2.8109 18 1 3.2085 -6.9133 -2.6374 19 6 3.7615 -5.4694 -4.1321 20 1 4.5590 -4.7420 -4.1680 21 6 3.3136 -6.0593 -5.2949 22 7 2.3428 -6.9454 -5.2511 23 14 4.0857 -5.6001 -6.9327 24 1 5.5355 -5.9200 -6.9036 25 1 3.4314 -6.3694 -8.0215 26 1 3.9043 -4.1463 -7.1751 27 6 3.7986 -5.0562 -1.6568 28 1 -0.3634 0.0773 1.0247 29 1 -0.3633 0.8487 -0.5794 30 1 -0.3633 -0.9261 -0.4455 31 1 3.1725 -0.8758 -1.2677 32 1 1.6124 -1.8594 -1.2683 33 1 1.3426 -3.2127 3.4604 34 1 3.0243 -2.7334 2.8740 35 1 0.6439 -4.4973 -1.0269 36 1 1.2297 -6.1676 -0.7650 37 1 1.5319 -4.4185 -3.2672 38 1 0.9924 -6.1273 -3.1574 39 1 2.0279 -7.3607 -6.0692 40 1 4.5279 -5.6877 -1.1494 41 1 4.2889 -4.1644 -2.0472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717211434.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:47 Heat of formation + Delta-G solvation = -10.720733 kcal Electronic energy + Delta-G solvation = -20427.937529 eV Core-core repulsion = 17501.225015 eV Total energy + Delta-G solvation = -2926.712514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31314 -39.44815 -38.18986 -36.17414 -34.94750 -32.13938 -30.10780 -29.34325 -27.43443 -25.44721 -24.48084 -23.23385 -22.18975 -21.44824 -20.70342 -19.46184 -18.58583 -17.96218 -16.92941 -16.79448 -16.52662 -16.19013 -15.77385 -14.87427 -14.64913 -14.43486 -14.25284 -13.83127 -13.70987 -13.37093 -13.16830 -13.09063 -12.93467 -12.87717 -12.67096 -12.41707 -12.32361 -12.06777 -11.79639 -11.66505 -11.47962 -11.34616 -10.99188 -10.84010 -10.66109 -10.51898 -10.45798 -9.53189 -8.17489 -6.26489 1.42211 1.42568 1.50362 1.54334 2.09967 2.42818 2.69104 3.02840 3.14451 3.50736 3.75302 3.79788 3.85626 4.07170 4.09556 4.18847 4.32468 4.35264 4.43752 4.45083 4.46703 4.48663 4.69774 4.79440 4.88843 4.90590 4.92486 4.98160 5.02677 5.12026 5.21184 5.21809 5.26611 5.33185 5.38556 5.46339 5.56177 5.75525 5.85613 6.27158 6.71126 6.79128 7.25857 7.40834 8.91802 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.005241 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.787890 B = 5340.986335 C = 5795.192196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.127 4.127 3 H 0.110 0.890 4 C -0.188 4.188 5 C -0.126 4.126 6 H 0.089 0.911 7 C -0.081 4.081 8 H 0.146 0.854 9 C -0.132 4.132 10 C -0.197 4.197 11 H 0.144 0.856 12 C 0.552 3.448 13 O -0.593 6.593 14 N -0.611 5.611 15 C 0.105 3.895 16 C -0.100 4.100 17 C 0.040 3.960 18 H 0.018 0.982 19 C -0.536 4.536 20 H 0.047 0.953 21 C 0.024 3.976 22 N -0.911 5.911 23 Si 0.951 3.049 24 H -0.275 1.275 25 H -0.279 1.279 26 H -0.273 1.273 27 C 0.124 3.876 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.138 0.862 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.264 0.736 40 H 0.038 0.962 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.695 9.661 12.663 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.145 4.145 3 H 0.128 0.872 4 C -0.225 4.225 5 C -0.144 4.144 6 H 0.107 0.893 7 C -0.099 4.099 8 H 0.163 0.837 9 C -0.169 4.169 10 C -0.217 4.217 11 H 0.162 0.838 12 C 0.343 3.657 13 O -0.474 6.474 14 N -0.343 5.343 15 C -0.016 4.016 16 C -0.138 4.138 17 C 0.021 3.979 18 H 0.036 0.964 19 C -0.574 4.574 20 H 0.066 0.934 21 C -0.176 4.176 22 N -0.549 5.549 23 Si 0.777 3.223 24 H -0.200 1.200 25 H -0.205 1.205 26 H -0.199 1.199 27 C 0.001 3.999 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.156 0.844 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.221 9.768 12.770 18.058 hybrid contribution 1.090 -0.280 -1.435 1.824 sum -7.131 9.488 11.335 16.413 Atomic orbital electron populations 1.21393 0.91021 1.02390 1.02949 1.22519 0.96649 0.93614 1.01760 0.87234 1.22955 1.02066 1.02945 0.94568 1.21790 0.99963 0.99731 0.92940 0.89290 1.21932 1.00576 0.87203 1.00196 0.83665 1.23165 1.02616 1.00341 0.90781 1.22374 0.98928 0.99424 1.01011 0.83821 1.19885 0.89858 0.76131 0.79798 1.90602 1.28407 1.55233 1.73201 1.48696 1.10545 1.52685 1.22339 1.22555 0.85111 0.99165 0.94803 1.22509 0.98564 1.00111 0.92638 1.19608 0.92986 0.94009 0.91280 0.96358 1.21261 1.19470 1.24409 0.92284 0.93436 1.25600 0.95349 0.94626 1.02016 1.70012 1.27951 1.27972 1.29004 0.85719 0.78738 0.78393 0.79462 1.20001 1.20455 1.19869 1.21916 0.90181 0.97647 0.90163 0.90250 0.91233 0.92659 0.91368 0.89860 0.84444 0.89650 0.88831 0.90553 0.93673 0.91263 0.92672 0.94328 0.94387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 8.76 71.98 0.63 -1.32 16 2 C -0.13 -2.74 6.41 -10.77 -0.07 -2.81 16 3 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.19 -5.54 8.99 30.62 0.28 -5.26 16 5 C -0.13 -3.24 4.81 -10.79 -0.05 -3.29 16 6 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 7 C -0.08 -1.71 5.51 -10.77 -0.06 -1.77 16 8 H 0.15 2.21 6.64 -2.39 -0.02 2.19 16 9 C -0.13 -2.76 9.77 30.62 0.30 -2.46 16 10 C -0.20 -4.98 5.39 -11.54 -0.06 -5.04 16 11 H 0.14 2.90 7.51 -2.39 -0.02 2.88 16 12 C 0.55 20.18 6.09 87.66 0.53 20.71 16 13 O -0.59 -26.04 16.15 -3.03 -0.05 -26.09 16 14 N -0.61 -23.55 3.34 -810.98 -2.71 -26.25 16 15 C 0.11 3.53 6.44 86.79 0.56 4.09 16 16 C -0.10 -4.28 5.95 31.99 0.19 -4.09 16 17 C 0.04 1.99 2.78 -10.35 -0.03 1.96 16 18 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 19 C -0.54 -29.39 8.47 25.60 0.22 -29.18 16 20 H 0.05 2.63 7.53 -2.91 -0.02 2.61 16 21 C 0.02 1.31 5.36 84.65 0.45 1.77 16 22 N -0.91 -50.57 12.50 21.45 0.27 -50.30 16 23 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 C 0.12 5.67 6.45 86.73 0.56 6.23 16 28 H 0.08 0.99 7.73 -2.39 -0.02 0.97 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.95 7.88 -2.38 -0.02 0.93 16 31 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.08 2.64 8.05 -2.39 -0.02 2.62 16 33 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 2.20 7.68 -2.39 -0.02 2.18 16 35 H 0.09 2.53 7.58 -2.39 -0.02 2.51 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.04 2.04 8.04 -2.39 -0.02 2.02 16 38 H 0.07 3.13 7.77 -2.39 -0.02 3.11 16 39 H 0.26 13.97 8.31 -92.71 -0.77 13.19 16 40 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.04 1.87 7.63 -2.39 -0.02 1.85 16 Total: -1.00 -64.70 331.49 3.98 -60.73 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.99 Total: 17.31 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 3.45 Total: -20.47 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -2.44 Total: -76.55 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.09 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -64.70 3.98 -60.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717211434.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.005 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds