Wall clock time and date at job start Mon Mar 30 2020 07:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 115.55521 * 2 1 4 4 C 1.53001 * 117.49843 * 214.31694 * 2 1 3 5 5 C 1.52995 * 117.50322 * 145.69482 * 2 1 3 6 6 H 1.09008 * 117.49801 * 214.98026 * 5 2 1 7 7 C 1.53000 * 117.49858 * 359.97438 * 5 2 1 8 8 H 1.08999 * 115.54893 * 324.01041 * 7 5 2 9 9 C 1.53001 * 117.49601 * 109.72544 * 7 5 2 10 10 C 1.52999 * 60.00033 * 107.48795 * 9 7 5 11 11 H 1.09006 * 117.51730 * 107.47487 * 10 9 7 12 12 C 1.50696 * 117.50022 * 252.50833 * 10 9 7 13 13 O 1.21281 * 119.99582 * 318.63807 * 12 10 9 14 14 N 1.34775 * 120.00508 * 138.63667 * 12 10 9 15 15 C 1.46501 * 120.00327 * 179.97438 * 14 12 10 16 16 C 1.50702 * 109.46603 * 90.00162 * 15 14 12 17 17 H 1.08001 * 120.00303 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99530 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00557 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99872 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47015 * 60.00251 * 20 18 16 22 22 H 1.48502 * 109.47091 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47105 * 300.00222 * 20 18 16 24 24 C 1.46504 * 119.99814 * 0.02562 * 14 12 10 25 25 C 1.52996 * 117.49921 * 188.74313 * 24 14 12 26 26 C 1.52998 * 117.49671 * 120.08411 * 24 14 12 27 27 H 1.08998 * 109.46847 * 157.37343 * 1 2 3 28 28 H 1.09000 * 109.46764 * 277.36343 * 1 2 3 29 29 H 1.08992 * 109.47672 * 37.36479 * 1 2 3 30 30 H 1.08996 * 117.50294 * 359.97438 * 4 2 1 31 31 H 1.09008 * 117.49882 * 144.99074 * 4 2 1 32 32 H 1.09006 * 117.49502 * 214.97856 * 9 7 5 33 33 H 1.08997 * 117.50084 * 359.97438 * 9 7 5 34 34 H 1.08996 * 109.46817 * 210.00014 * 15 14 12 35 35 H 1.08993 * 109.47134 * 330.00346 * 15 14 12 36 36 H 0.96995 * 120.00148 * 179.97438 * 19 18 16 37 37 H 1.09005 * 115.54674 * 334.41820 * 24 14 12 38 38 H 1.09003 * 117.49689 * 0.02562 * 25 24 14 39 39 H 1.09004 * 117.49608 * 145.01750 * 25 24 14 40 40 H 1.09009 * 117.49311 * 214.97950 * 26 24 14 41 41 H 1.08996 * 117.50604 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7648 6 1 3.1717 -0.8751 1.2681 7 6 1.3590 -2.1559 1.4717 8 1 0.4378 -1.7711 1.9091 9 6 1.3286 -3.5711 0.8909 10 6 2.0651 -3.2988 2.2040 11 1 1.6083 -3.6658 3.1232 12 6 3.5716 -3.3188 2.1739 13 8 4.1541 -4.1695 1.5350 14 7 4.2718 -2.3916 2.8568 15 6 5.7364 -2.4114 2.8280 16 6 6.2275 -1.5703 1.6780 17 1 5.5195 -1.0706 1.0334 18 6 7.5807 -1.4379 1.4495 19 7 8.4429 -2.0460 2.2346 20 14 8.1896 -0.3947 0.0245 21 1 7.7164 1.0025 0.1962 22 1 9.6742 -0.4149 -0.0049 23 1 7.6623 -0.9427 -1.2510 24 6 3.5682 -1.3643 3.6289 25 6 4.4037 -0.2232 4.2125 26 6 3.8356 -1.3052 5.1342 27 1 -0.3633 -0.9486 -0.3954 28 1 -0.3633 0.1317 1.0192 29 1 -0.3634 0.8167 -0.6236 30 1 1.6113 -1.8586 -1.2681 31 1 3.1713 -0.8749 -1.2688 32 1 0.3870 -4.1175 0.9459 33 1 1.9334 -3.7647 0.0050 34 1 6.1236 -2.0090 3.7639 35 1 6.0834 -3.4370 2.7022 36 1 9.3949 -1.9531 2.0736 37 1 2.5608 -1.1268 3.2869 38 1 5.4768 -0.2365 4.0215 39 1 3.9459 0.7651 4.2547 40 1 3.0042 -1.0283 5.7825 41 1 4.5346 -2.0307 5.5502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717229208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:08 Heat of formation + Delta-G solvation = 39.190928 kcal Electronic energy + Delta-G solvation = -20913.004826 eV Core-core repulsion = 17988.456644 eV Total energy + Delta-G solvation = -2924.548182 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91001 -37.92448 -36.71584 -34.93370 -33.17703 -31.86705 -28.40673 -27.67422 -24.33903 -24.04891 -22.39974 -21.88845 -21.19390 -20.71378 -19.29909 -17.75177 -16.66978 -16.40755 -15.82468 -15.28668 -15.04244 -14.47146 -14.09148 -13.84296 -13.33851 -13.25570 -12.93746 -12.40666 -12.13710 -12.00973 -11.54476 -11.41440 -11.27376 -11.02388 -10.95423 -10.86411 -10.62348 -10.57802 -10.47605 -10.31983 -10.10192 -10.00429 -9.52693 -9.46256 -9.42852 -8.78983 -8.42043 -7.48219 -6.02839 -4.07030 3.31461 3.33493 3.36416 3.39998 3.69527 3.90196 4.08237 4.41236 4.48825 4.75270 4.89198 4.96760 5.07861 5.20768 5.30175 5.32100 5.36703 5.41308 5.45308 5.48257 5.62784 5.72372 5.83061 5.90277 5.94944 6.03884 6.05147 6.08266 6.18312 6.26188 6.37488 6.43731 6.48955 6.59125 6.77445 7.09278 7.46074 7.57640 7.93891 8.24654 8.47198 8.92374 9.14678 9.57666 11.05052 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.007801 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.566305 B = 3588.207227 C = 4131.774578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.154 4.154 3 H 0.101 0.899 4 C -0.169 4.169 5 C -0.130 4.130 6 H 0.125 0.875 7 C -0.107 4.107 8 H 0.110 0.890 9 C -0.147 4.147 10 C -0.174 4.174 11 H 0.122 0.878 12 C 0.542 3.458 13 O -0.537 6.537 14 N -0.565 5.565 15 C 0.243 3.757 16 C -0.518 4.518 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.077 3.923 25 C -0.177 4.177 26 C -0.205 4.205 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.034 0.966 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.883 4.042 1.119 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.172 4.172 3 H 0.119 0.881 4 C -0.206 4.206 5 C -0.148 4.148 6 H 0.143 0.857 7 C -0.125 4.125 8 H 0.128 0.872 9 C -0.185 4.185 10 C -0.195 4.195 11 H 0.140 0.860 12 C 0.328 3.672 13 O -0.414 6.414 14 N -0.295 5.295 15 C 0.125 3.875 16 C -0.557 4.557 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.029 4.029 25 C -0.214 4.214 26 C -0.244 4.244 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.329 3.542 0.796 15.753 hybrid contribution 0.519 0.620 -0.627 1.023 sum -14.810 4.162 0.170 15.385 Atomic orbital electron populations 1.21297 0.93247 1.01563 1.01336 1.22331 0.94927 0.94468 1.05470 0.88103 1.23069 1.02294 1.00930 0.94273 1.22118 1.00775 0.97959 0.93980 0.85704 1.21768 0.99465 0.89014 1.02260 0.87208 1.23017 1.01184 0.97449 0.96825 1.22346 0.93651 1.05212 0.98295 0.85980 1.19280 0.87200 0.81377 0.79303 1.90670 1.71133 1.37591 1.42045 1.47696 1.08715 1.26719 1.46356 1.19296 0.72250 0.98711 0.97277 1.21337 0.91560 1.29624 1.13156 0.92479 1.24909 0.96675 0.95973 0.96475 1.69917 1.02124 1.43182 1.38240 0.86618 0.77566 0.80601 0.83011 1.20252 1.21238 1.20225 1.21619 0.97013 0.93576 0.90681 1.23345 1.02367 0.93181 1.02552 1.23393 1.03765 1.03358 0.93918 0.92548 0.92463 0.92685 0.88927 0.88899 0.88543 0.87935 0.94800 0.93997 0.92714 0.85946 0.86426 0.89064 0.89125 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.01 37.16 0.33 -0.84 16 2 C -0.15 -1.96 6.41 -90.62 -0.58 -2.54 16 3 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 4 C -0.17 -2.48 9.38 -26.73 -0.25 -2.73 16 5 C -0.13 -1.98 4.57 -90.63 -0.41 -2.39 16 6 H 0.13 2.31 5.48 -51.92 -0.28 2.02 16 7 C -0.11 -1.42 4.04 -90.62 -0.37 -1.78 16 8 H 0.11 1.19 7.35 -51.93 -0.38 0.81 16 9 C -0.15 -2.05 9.31 -26.73 -0.25 -2.30 16 10 C -0.17 -2.72 4.99 -91.77 -0.46 -3.18 16 11 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 12 C 0.54 11.57 6.26 -10.99 -0.07 11.50 16 13 O -0.54 -14.00 16.52 5.56 0.09 -13.91 16 14 N -0.57 -12.02 2.29 -167.47 -0.38 -12.41 16 15 C 0.24 6.33 4.46 -5.19 -0.02 6.31 16 16 C -0.52 -14.40 9.18 -34.44 -0.32 -14.72 16 17 H 0.06 1.59 7.69 -52.49 -0.40 1.18 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 20 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.08 1.30 4.61 -67.93 -0.31 0.99 16 25 C -0.18 -2.93 9.72 -26.70 -0.26 -3.19 16 26 C -0.21 -3.10 10.13 -26.70 -0.27 -3.37 16 27 H 0.06 0.55 7.86 -51.93 -0.41 0.15 16 28 H 0.06 0.52 7.81 -51.93 -0.41 0.12 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.25 7.60 -51.93 -0.39 0.86 16 31 H 0.09 1.49 8.14 -51.92 -0.42 1.06 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.65 7.67 -51.93 -0.40 1.25 16 34 H 0.03 0.89 6.32 -51.93 -0.33 0.56 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.12 1.80 5.30 -51.93 -0.28 1.53 16 38 H 0.12 2.36 6.29 -51.93 -0.33 2.04 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 41 H 0.09 1.54 8.12 -51.93 -0.42 1.12 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -31.60 330.70 -9.43 -41.03 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.51 Total: 5.84 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -3.33 Total: -16.61 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.35 Total: -38.17 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.60 -9.43 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717229208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.220 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds