Wall clock time and date at job start Mon Mar 30 2020 07:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 115.55521 * 2 1 4 4 C 1.53001 * 117.49843 * 214.31694 * 2 1 3 5 5 C 1.52995 * 117.50322 * 145.69482 * 2 1 3 6 6 H 1.09008 * 117.49801 * 214.98026 * 5 2 1 7 7 C 1.53000 * 117.49858 * 359.97438 * 5 2 1 8 8 H 1.08999 * 115.54893 * 324.01041 * 7 5 2 9 9 C 1.53001 * 117.49601 * 109.72544 * 7 5 2 10 10 C 1.52999 * 60.00033 * 107.48795 * 9 7 5 11 11 H 1.09006 * 117.51730 * 107.47487 * 10 9 7 12 12 C 1.50696 * 117.50022 * 252.50833 * 10 9 7 13 13 O 1.21281 * 119.99582 * 318.63807 * 12 10 9 14 14 N 1.34775 * 120.00508 * 138.63667 * 12 10 9 15 15 C 1.46501 * 120.00327 * 179.97438 * 14 12 10 16 16 C 1.50702 * 109.46603 * 90.00162 * 15 14 12 17 17 H 1.08001 * 120.00303 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99530 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00557 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99872 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47015 * 60.00251 * 20 18 16 22 22 H 1.48502 * 109.47091 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47105 * 300.00222 * 20 18 16 24 24 C 1.46504 * 119.99814 * 0.02562 * 14 12 10 25 25 C 1.52996 * 117.49921 * 188.74313 * 24 14 12 26 26 C 1.52998 * 117.49671 * 120.08411 * 24 14 12 27 27 H 1.08998 * 109.46847 * 157.37343 * 1 2 3 28 28 H 1.09000 * 109.46764 * 277.36343 * 1 2 3 29 29 H 1.08992 * 109.47672 * 37.36479 * 1 2 3 30 30 H 1.08996 * 117.50294 * 359.97438 * 4 2 1 31 31 H 1.09008 * 117.49882 * 144.99074 * 4 2 1 32 32 H 1.09006 * 117.49502 * 214.97856 * 9 7 5 33 33 H 1.08997 * 117.50084 * 359.97438 * 9 7 5 34 34 H 1.08996 * 109.46817 * 210.00014 * 15 14 12 35 35 H 1.08993 * 109.47134 * 330.00346 * 15 14 12 36 36 H 0.96995 * 120.00148 * 179.97438 * 19 18 16 37 37 H 1.09005 * 115.54674 * 334.41820 * 24 14 12 38 38 H 1.09003 * 117.49689 * 0.02562 * 25 24 14 39 39 H 1.09004 * 117.49608 * 145.01750 * 25 24 14 40 40 H 1.09009 * 117.49311 * 214.97950 * 26 24 14 41 41 H 1.08996 * 117.50604 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7648 6 1 3.1717 -0.8751 1.2681 7 6 1.3590 -2.1559 1.4717 8 1 0.4378 -1.7711 1.9091 9 6 1.3286 -3.5711 0.8909 10 6 2.0651 -3.2988 2.2040 11 1 1.6083 -3.6658 3.1232 12 6 3.5716 -3.3188 2.1739 13 8 4.1541 -4.1695 1.5350 14 7 4.2718 -2.3916 2.8568 15 6 5.7364 -2.4114 2.8280 16 6 6.2275 -1.5703 1.6780 17 1 5.5195 -1.0706 1.0334 18 6 7.5807 -1.4379 1.4495 19 7 8.4429 -2.0460 2.2346 20 14 8.1896 -0.3947 0.0245 21 1 7.7164 1.0025 0.1962 22 1 9.6742 -0.4149 -0.0049 23 1 7.6623 -0.9427 -1.2510 24 6 3.5682 -1.3643 3.6289 25 6 4.4037 -0.2232 4.2125 26 6 3.8356 -1.3052 5.1342 27 1 -0.3633 -0.9486 -0.3954 28 1 -0.3633 0.1317 1.0192 29 1 -0.3634 0.8167 -0.6236 30 1 1.6113 -1.8586 -1.2681 31 1 3.1713 -0.8749 -1.2688 32 1 0.3870 -4.1175 0.9459 33 1 1.9334 -3.7647 0.0050 34 1 6.1236 -2.0090 3.7639 35 1 6.0834 -3.4370 2.7022 36 1 9.3949 -1.9531 2.0736 37 1 2.5608 -1.1268 3.2869 38 1 5.4768 -0.2365 4.0215 39 1 3.9459 0.7651 4.2547 40 1 3.0042 -1.0283 5.7825 41 1 4.5346 -2.0307 5.5502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717229208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:08 Heat of formation + Delta-G solvation = 21.288838 kcal Electronic energy + Delta-G solvation = -20913.781119 eV Core-core repulsion = 17988.456644 eV Total energy + Delta-G solvation = -2925.324475 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36151 -39.22537 -38.25158 -36.16348 -35.20488 -33.71256 -29.71737 -29.25130 -26.03811 -25.34879 -24.01538 -23.18322 -22.68156 -21.76503 -20.54728 -19.26507 -18.63102 -17.95621 -17.12318 -17.07130 -16.36296 -16.16331 -15.58923 -15.31622 -14.80662 -14.53627 -14.28438 -13.79540 -13.44576 -13.40872 -13.17621 -13.06174 -12.74871 -12.68581 -12.37071 -12.25088 -12.20910 -12.13264 -11.99519 -11.69009 -11.49801 -11.44744 -11.32884 -10.66844 -10.63082 -10.52947 -10.41392 -9.23698 -8.23429 -6.37172 1.31034 1.35223 1.42202 1.75084 2.19112 2.38013 2.72023 2.90061 3.05274 3.11026 3.56615 3.75518 3.85926 3.95207 3.97937 4.09740 4.14384 4.20612 4.30639 4.40865 4.51299 4.65888 4.84674 4.85760 4.90026 4.94638 5.02294 5.04237 5.05147 5.10599 5.14863 5.25725 5.27405 5.29692 5.36948 5.41151 5.53657 5.57738 5.83575 6.04765 6.68951 6.81210 7.27224 7.48897 8.83149 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.007801 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.566305 B = 3588.207227 C = 4131.774578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.124 4.124 3 H 0.099 0.901 4 C -0.190 4.190 5 C -0.151 4.151 6 H 0.088 0.912 7 C -0.079 4.079 8 H 0.155 0.845 9 C -0.143 4.143 10 C -0.186 4.186 11 H 0.156 0.844 12 C 0.530 3.470 13 O -0.602 6.602 14 N -0.569 5.569 15 C 0.262 3.738 16 C -0.526 4.526 17 H 0.050 0.950 18 C 0.009 3.991 19 N -0.929 5.929 20 Si 0.960 3.040 21 H -0.260 1.260 22 H -0.278 1.278 23 H -0.280 1.280 24 C 0.065 3.935 25 C -0.185 4.185 26 C -0.181 4.181 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.137 0.863 33 H 0.070 0.930 34 H 0.025 0.975 35 H -0.011 1.011 36 H 0.266 0.734 37 H 0.155 0.845 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.668 5.981 1.512 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.142 4.142 3 H 0.117 0.883 4 C -0.227 4.227 5 C -0.169 4.169 6 H 0.106 0.894 7 C -0.097 4.097 8 H 0.172 0.828 9 C -0.180 4.180 10 C -0.206 4.206 11 H 0.174 0.826 12 C 0.320 3.680 13 O -0.484 6.484 14 N -0.297 5.297 15 C 0.141 3.859 16 C -0.564 4.564 17 H 0.069 0.931 18 C -0.190 4.190 19 N -0.569 5.569 20 Si 0.785 3.215 21 H -0.184 1.184 22 H -0.203 1.203 23 H -0.206 1.206 24 C -0.039 4.039 25 C -0.223 4.223 26 C -0.220 4.220 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.155 0.845 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.007 0.993 36 H 0.075 0.925 37 H 0.173 0.827 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.155 0.845 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.146 5.519 1.220 19.963 hybrid contribution 1.760 0.007 -0.745 1.911 sum -17.386 5.526 0.475 18.249 Atomic orbital electron populations 1.21347 0.90305 1.02535 1.02968 1.22430 0.96886 0.93180 1.01711 0.88302 1.23084 1.02084 1.03198 0.94287 1.22056 1.00547 1.00429 0.93877 0.89428 1.21918 0.99550 0.87839 1.00360 0.82763 1.23124 1.01811 0.98584 0.94480 1.22298 0.89023 1.08499 1.00813 0.82641 1.20387 0.89940 0.79955 0.77697 1.90624 1.73092 1.40034 1.44663 1.47643 1.06927 1.28082 1.47023 1.18688 0.75847 0.95039 0.96322 1.21522 0.91831 1.29600 1.13466 0.93132 1.25789 0.96883 0.97208 0.99127 1.70040 1.02451 1.44485 1.39951 0.85582 0.77302 0.79539 0.79118 1.18415 1.20282 1.20596 1.22012 0.97766 0.92584 0.91567 1.23300 1.00037 0.95206 1.03717 1.23459 1.04123 1.01367 0.93041 0.91944 0.90480 0.91370 0.87822 0.91683 0.84493 0.91084 0.95730 0.99252 0.92496 0.82742 0.90888 0.85679 0.84475 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.01 71.98 0.65 -1.10 16 2 C -0.12 -2.83 6.41 -10.80 -0.07 -2.90 16 3 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 4 C -0.19 -5.52 9.38 30.59 0.29 -5.24 16 5 C -0.15 -4.36 4.57 -10.80 -0.05 -4.41 16 6 H 0.09 3.26 5.48 -2.38 -0.01 3.24 16 7 C -0.08 -1.81 4.04 -10.79 -0.04 -1.85 16 8 H 0.15 2.28 7.35 -2.39 -0.02 2.26 16 9 C -0.14 -3.61 9.31 30.59 0.28 -3.32 16 10 C -0.19 -5.43 4.99 -11.54 -0.06 -5.49 16 11 H 0.16 3.54 8.14 -2.38 -0.02 3.52 16 12 C 0.53 23.41 6.26 87.66 0.55 23.96 16 13 O -0.60 -33.54 16.52 -3.03 -0.05 -33.59 16 14 N -0.57 -25.14 2.29 -802.15 -1.84 -26.98 16 15 C 0.26 14.64 4.46 85.63 0.38 15.02 16 16 C -0.53 -30.91 9.18 25.60 0.24 -30.67 16 17 H 0.05 2.97 7.69 -2.91 -0.02 2.95 16 18 C 0.01 0.51 5.46 84.65 0.46 0.97 16 19 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 20 Si 0.96 46.18 29.54 68.60 2.03 48.20 16 21 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 24 C 0.06 2.11 4.61 44.99 0.21 2.32 16 25 C -0.19 -6.00 9.72 30.62 0.30 -5.71 16 26 C -0.18 -5.11 10.13 30.62 0.31 -4.80 16 27 H 0.06 0.91 7.86 -2.39 -0.02 0.89 16 28 H 0.08 0.93 7.81 -2.39 -0.02 0.91 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 2.73 7.60 -2.39 -0.02 2.71 16 31 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.14 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.07 2.28 7.67 -2.39 -0.02 2.26 16 34 H 0.02 1.40 6.32 -2.39 -0.02 1.39 16 35 H -0.01 -0.69 7.42 -2.39 -0.02 -0.71 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.16 4.03 5.30 -2.38 -0.01 4.02 16 38 H 0.07 3.07 6.29 -2.39 -0.02 3.05 16 39 H 0.13 3.16 8.14 -2.38 -0.02 3.14 16 40 H 0.14 2.65 8.14 -2.38 -0.02 2.63 16 41 H 0.07 2.35 8.12 -2.39 -0.02 2.33 16 Total: -1.00 -76.71 330.70 4.88 -71.84 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 1.01 Total: 20.99 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 3.44 Total: -23.21 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -1.55 Total: -84.23 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.05 Total: -33.59 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -76.71 4.88 -71.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717229208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.128 kcal (2) G-P(sol) polarization free energy of solvation -76.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds