Wall clock time and date at job start Mon Mar 30 2020 07:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 115.55682 * 2 1 4 4 C 1.53004 * 117.51490 * 214.29203 * 2 1 3 5 5 C 1.53005 * 60.00121 * 252.51993 * 4 2 1 6 6 H 1.08997 * 117.51862 * 252.52021 * 5 4 2 7 7 C 1.53004 * 117.49466 * 107.48933 * 5 4 2 8 8 H 1.08999 * 115.54789 * 330.82804 * 7 5 4 9 9 C 1.53004 * 117.51519 * 185.12422 * 7 5 4 10 10 C 1.52997 * 117.49556 * 116.49791 * 7 5 4 11 11 H 1.08997 * 117.49931 * 214.99958 * 10 7 5 12 12 C 1.50701 * 117.50366 * 359.97438 * 10 7 5 13 13 O 1.21279 * 119.99842 * 89.91567 * 12 10 7 14 14 N 1.34770 * 120.00367 * 269.92244 * 12 10 7 15 15 C 1.46494 * 120.00410 * 179.97438 * 14 12 10 16 16 C 1.50697 * 109.47148 * 89.99699 * 15 14 12 17 17 H 1.07992 * 120.00296 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99905 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99977 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99971 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47101 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47291 * 119.99722 * 20 18 16 23 23 H 1.48495 * 109.47016 * 239.99910 * 20 18 16 24 24 C 1.46503 * 119.99603 * 359.97438 * 14 12 10 25 25 C 1.53001 * 117.49834 * 188.62152 * 24 14 12 26 26 C 1.52997 * 60.00404 * 252.51283 * 25 24 14 27 27 H 1.09003 * 109.46586 * 274.33551 * 1 2 3 28 28 H 1.08998 * 109.46878 * 34.33037 * 1 2 3 29 29 H 1.08993 * 109.47327 * 154.33509 * 1 2 3 30 30 H 1.09003 * 117.49585 * 145.03231 * 4 2 1 31 31 H 1.08995 * 117.50213 * 0.02562 * 4 2 1 32 32 H 1.08994 * 117.49689 * 0.02562 * 9 7 5 33 33 H 1.08997 * 117.49239 * 145.03170 * 9 7 5 34 34 H 1.09010 * 109.47351 * 209.99967 * 15 14 12 35 35 H 1.09000 * 109.47161 * 329.99602 * 15 14 12 36 36 H 0.97008 * 120.00281 * 180.02562 * 19 18 16 37 37 H 1.08995 * 115.55339 * 334.33787 * 24 14 12 38 38 H 1.08997 * 117.50112 * 0.02562 * 25 24 14 39 39 H 1.09001 * 117.49798 * 145.02272 * 25 24 14 40 40 H 1.08995 * 117.50326 * 252.51321 * 26 25 24 41 41 H 1.09003 * 117.50045 * 107.48679 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2369 -1.1211 -0.7645 5 6 2.2365 -1.1207 0.7655 6 1 3.1711 -0.8745 1.2693 7 6 1.3587 -2.1560 1.4719 8 1 0.4673 -2.4667 0.9270 9 6 1.2639 -2.0796 2.9971 10 6 2.0607 -3.2058 2.3355 11 1 1.6310 -4.2072 2.3590 12 6 3.5637 -3.1415 2.4250 13 8 4.0917 -2.4800 3.2935 14 7 4.3210 -3.8190 1.5397 15 6 5.7821 -3.7561 1.6263 16 6 6.2806 -4.8638 2.5181 17 1 5.5794 -5.5466 2.9745 18 6 7.6321 -5.0055 2.7515 19 7 8.4861 -4.1743 2.1954 20 14 8.2501 -6.3789 3.8565 21 1 7.0966 -7.1707 4.3543 22 1 9.1616 -7.2623 3.0856 23 1 8.9833 -5.7954 5.0085 24 6 3.6831 -4.6184 0.4907 25 6 4.5831 -5.5218 -0.3548 26 6 3.9885 -4.2499 -0.9626 27 1 -0.3632 0.0777 1.0248 28 1 -0.3633 0.8486 -0.5796 29 1 -0.3633 -0.9262 -0.4451 30 1 3.1721 -0.8752 -1.2676 31 1 1.6120 -1.8587 -1.2680 32 1 1.8265 -1.2915 3.4974 33 1 0.3100 -2.3401 3.4556 34 1 6.2104 -3.8708 0.6304 35 1 6.0803 -2.7933 2.0413 36 1 9.4370 -4.2741 2.3593 37 1 2.6798 -4.9782 0.7184 38 1 5.6497 -5.5217 -0.1303 39 1 4.1720 -6.4763 -0.6833 40 1 3.1862 -4.3675 -1.6909 41 1 4.6640 -3.4126 -1.1381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717229211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:11 Heat of formation + Delta-G solvation = 36.432825 kcal Electronic energy + Delta-G solvation = -20574.351336 eV Core-core repulsion = 17649.683554 eV Total energy + Delta-G solvation = -2924.667782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.77889 -38.02297 -36.72865 -35.05169 -33.16590 -31.87092 -28.52123 -27.71704 -24.42038 -23.46435 -22.41958 -21.88744 -21.46825 -20.97235 -19.37326 -17.79926 -16.67373 -16.37076 -16.06978 -15.26029 -14.80601 -14.37782 -14.13046 -13.73005 -13.31685 -13.22047 -13.13187 -12.43684 -12.33552 -12.02016 -11.59733 -11.44400 -11.39824 -11.04401 -10.97046 -10.94814 -10.81483 -10.53568 -10.52515 -10.32989 -10.11208 -10.00479 -9.66943 -9.46631 -9.27527 -8.80026 -8.42109 -7.46456 -6.02518 -4.06678 3.23729 3.30785 3.38638 3.43150 3.68630 3.84146 4.27757 4.42349 4.51378 4.59047 4.81105 4.95713 5.02673 5.21851 5.30850 5.32411 5.34790 5.36882 5.43130 5.44035 5.52722 5.56086 5.78504 5.79736 5.90665 5.92399 6.00506 6.06859 6.15699 6.22299 6.30655 6.32647 6.46687 6.50485 6.78743 7.09896 7.45886 7.58804 7.94483 8.25609 8.48581 8.93618 9.15692 9.58379 11.05289 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.005614 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.039443 B = 4986.070577 C = 5327.862531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.155 4.155 3 H 0.100 0.900 4 C -0.164 4.164 5 C -0.117 4.117 6 H 0.106 0.894 7 C -0.095 4.095 8 H 0.107 0.893 9 C -0.147 4.147 10 C -0.178 4.178 11 H 0.119 0.881 12 C 0.542 3.458 13 O -0.541 6.541 14 N -0.563 5.563 15 C 0.245 3.755 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.896 5.896 20 Si 0.896 3.104 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.085 3.915 25 C -0.180 4.180 26 C -0.196 4.196 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.034 0.966 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.843 3.131 -7.215 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.173 4.173 3 H 0.118 0.882 4 C -0.201 4.201 5 C -0.135 4.135 6 H 0.124 0.876 7 C -0.114 4.114 8 H 0.125 0.875 9 C -0.185 4.185 10 C -0.199 4.199 11 H 0.137 0.863 12 C 0.329 3.671 13 O -0.419 6.419 14 N -0.292 5.292 15 C 0.126 3.874 16 C -0.558 4.558 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.021 4.021 25 C -0.218 4.218 26 C -0.235 4.235 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.329 3.524 -6.751 17.116 hybrid contribution 0.547 -0.977 0.541 1.243 sum -14.782 2.548 -6.210 16.235 Atomic orbital electron populations 1.21306 0.93073 1.01379 1.01701 1.22344 0.95200 0.94424 1.05376 0.88181 1.23021 1.02234 1.00799 0.94032 1.21794 0.99992 0.98057 0.93652 0.87630 1.21678 0.99179 0.97631 0.92898 0.87518 1.22950 1.00738 1.00394 0.94384 1.22357 0.93576 0.96499 1.07465 0.86336 1.19232 0.86885 0.79603 0.81360 1.90667 1.74100 1.42291 1.34829 1.47622 1.08688 1.45296 1.27608 1.19282 0.72356 0.98445 0.97348 1.21449 0.91911 1.13468 1.28995 0.92406 1.24923 0.96689 0.96451 0.96050 1.69944 1.02413 1.36982 1.44170 0.86465 0.78747 0.81848 0.80520 1.19799 1.21000 1.20938 1.21385 0.96793 0.98605 0.85344 1.23355 1.01945 0.93796 1.02663 1.23310 1.03710 0.99874 0.96620 0.92162 0.92699 0.92708 0.88984 0.88860 0.87754 0.88462 0.94796 0.94051 0.92833 0.86931 0.86478 0.89134 0.89252 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.10 37.16 0.34 -0.74 16 2 C -0.16 -1.75 6.41 -90.61 -0.58 -2.33 16 3 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.16 -1.95 9.90 -26.73 -0.26 -2.21 16 5 C -0.12 -1.61 5.26 -90.61 -0.48 -2.09 16 6 H 0.11 1.84 7.36 -51.93 -0.38 1.46 16 7 C -0.10 -1.22 5.08 -90.62 -0.46 -1.68 16 8 H 0.11 1.13 7.39 -51.93 -0.38 0.75 16 9 C -0.15 -2.02 9.76 -26.73 -0.26 -2.28 16 10 C -0.18 -2.78 4.73 -91.77 -0.43 -3.21 16 11 H 0.12 1.62 7.54 -51.93 -0.39 1.23 16 12 C 0.54 11.55 5.94 -10.99 -0.07 11.49 16 13 O -0.54 -13.96 16.06 5.56 0.09 -13.87 16 14 N -0.56 -12.08 2.79 -167.47 -0.47 -12.54 16 15 C 0.24 6.41 4.46 -5.20 -0.02 6.38 16 16 C -0.52 -14.75 9.19 -34.44 -0.32 -15.07 16 17 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 20 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.08 1.44 6.03 -67.92 -0.41 1.03 16 25 C -0.18 -2.99 9.72 -26.73 -0.26 -3.25 16 26 C -0.20 -2.91 10.13 -26.73 -0.27 -3.18 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.47 7.45 -51.93 -0.39 0.08 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 32 H 0.10 1.63 7.84 -51.93 -0.41 1.23 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.03 0.90 6.33 -51.92 -0.33 0.57 16 35 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.11 1.63 6.78 -51.93 -0.35 1.27 16 38 H 0.12 2.37 6.29 -51.93 -0.33 2.04 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.09 1.52 8.12 -51.93 -0.42 1.09 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -32.00 337.85 -9.84 -41.84 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.69 Total: 3.88 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -3.58 Total: -15.52 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.27 Total: -38.46 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.00 -9.84 -41.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717229211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.276 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds