Wall clock time and date at job start Mon Mar 30 2020 07:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 115.55682 * 2 1 4 4 C 1.53004 * 117.51490 * 214.29203 * 2 1 3 5 5 C 1.53005 * 60.00121 * 252.51993 * 4 2 1 6 6 H 1.08997 * 117.51862 * 252.52021 * 5 4 2 7 7 C 1.53004 * 117.49466 * 107.48933 * 5 4 2 8 8 H 1.08999 * 115.54789 * 330.82804 * 7 5 4 9 9 C 1.53004 * 117.51519 * 185.12422 * 7 5 4 10 10 C 1.52997 * 117.49556 * 116.49791 * 7 5 4 11 11 H 1.08997 * 117.49931 * 214.99958 * 10 7 5 12 12 C 1.50701 * 117.50366 * 359.97438 * 10 7 5 13 13 O 1.21279 * 119.99842 * 89.91567 * 12 10 7 14 14 N 1.34770 * 120.00367 * 269.92244 * 12 10 7 15 15 C 1.46494 * 120.00410 * 179.97438 * 14 12 10 16 16 C 1.50697 * 109.47148 * 89.99699 * 15 14 12 17 17 H 1.07992 * 120.00296 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99905 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99977 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99971 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47101 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47291 * 119.99722 * 20 18 16 23 23 H 1.48495 * 109.47016 * 239.99910 * 20 18 16 24 24 C 1.46503 * 119.99603 * 359.97438 * 14 12 10 25 25 C 1.53001 * 117.49834 * 188.62152 * 24 14 12 26 26 C 1.52997 * 60.00404 * 252.51283 * 25 24 14 27 27 H 1.09003 * 109.46586 * 274.33551 * 1 2 3 28 28 H 1.08998 * 109.46878 * 34.33037 * 1 2 3 29 29 H 1.08993 * 109.47327 * 154.33509 * 1 2 3 30 30 H 1.09003 * 117.49585 * 145.03231 * 4 2 1 31 31 H 1.08995 * 117.50213 * 0.02562 * 4 2 1 32 32 H 1.08994 * 117.49689 * 0.02562 * 9 7 5 33 33 H 1.08997 * 117.49239 * 145.03170 * 9 7 5 34 34 H 1.09010 * 109.47351 * 209.99967 * 15 14 12 35 35 H 1.09000 * 109.47161 * 329.99602 * 15 14 12 36 36 H 0.97008 * 120.00281 * 180.02562 * 19 18 16 37 37 H 1.08995 * 115.55339 * 334.33787 * 24 14 12 38 38 H 1.08997 * 117.50112 * 0.02562 * 25 24 14 39 39 H 1.09001 * 117.49798 * 145.02272 * 25 24 14 40 40 H 1.08995 * 117.50326 * 252.51321 * 26 25 24 41 41 H 1.09003 * 117.50045 * 107.48679 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2369 -1.1211 -0.7645 5 6 2.2365 -1.1207 0.7655 6 1 3.1711 -0.8745 1.2693 7 6 1.3587 -2.1560 1.4719 8 1 0.4673 -2.4667 0.9270 9 6 1.2639 -2.0796 2.9971 10 6 2.0607 -3.2058 2.3355 11 1 1.6310 -4.2072 2.3590 12 6 3.5637 -3.1415 2.4250 13 8 4.0917 -2.4800 3.2935 14 7 4.3210 -3.8190 1.5397 15 6 5.7821 -3.7561 1.6263 16 6 6.2806 -4.8638 2.5181 17 1 5.5794 -5.5466 2.9745 18 6 7.6321 -5.0055 2.7515 19 7 8.4861 -4.1743 2.1954 20 14 8.2501 -6.3789 3.8565 21 1 7.0966 -7.1707 4.3543 22 1 9.1616 -7.2623 3.0856 23 1 8.9833 -5.7954 5.0085 24 6 3.6831 -4.6184 0.4907 25 6 4.5831 -5.5218 -0.3548 26 6 3.9885 -4.2499 -0.9626 27 1 -0.3632 0.0777 1.0248 28 1 -0.3633 0.8486 -0.5796 29 1 -0.3633 -0.9262 -0.4451 30 1 3.1721 -0.8752 -1.2676 31 1 1.6120 -1.8587 -1.2680 32 1 1.8265 -1.2915 3.4974 33 1 0.3100 -2.3401 3.4556 34 1 6.2104 -3.8708 0.6304 35 1 6.0803 -2.7933 2.0413 36 1 9.4370 -4.2741 2.3593 37 1 2.6798 -4.9782 0.7184 38 1 5.6497 -5.5217 -0.1303 39 1 4.1720 -6.4763 -0.6833 40 1 3.1862 -4.3675 -1.6909 41 1 4.6640 -3.4126 -1.1381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717229211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:11 Heat of formation + Delta-G solvation = 18.112725 kcal Electronic energy + Delta-G solvation = -20575.145755 eV Core-core repulsion = 17649.683554 eV Total energy + Delta-G solvation = -2925.462201 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.22962 -39.24439 -38.20048 -36.25957 -35.20779 -33.71488 -29.76136 -29.28761 -26.14049 -24.70491 -23.99024 -23.16443 -22.74838 -22.14882 -20.48156 -19.35824 -18.59403 -17.98610 -17.23509 -17.06616 -16.27700 -15.89496 -15.73022 -15.01706 -14.80254 -14.46747 -14.20783 -13.87251 -13.57064 -13.41037 -13.24370 -13.10074 -12.71534 -12.66534 -12.33256 -12.23993 -12.17615 -12.08948 -12.07161 -11.92633 -11.46421 -11.45623 -11.32924 -10.68524 -10.64999 -10.56377 -10.21699 -9.21566 -8.23797 -6.38877 1.33029 1.35644 1.47642 1.73251 2.23035 2.39456 2.59252 3.04614 3.12607 3.26348 3.49401 3.71745 3.88621 3.92838 4.01325 4.11748 4.23234 4.27938 4.32304 4.35191 4.43035 4.51918 4.85399 4.88426 4.93345 4.98194 4.99690 5.04609 5.05885 5.08552 5.16547 5.25889 5.27653 5.28517 5.39549 5.43401 5.52662 5.55816 5.84305 6.04294 6.68524 6.82976 7.26815 7.50545 8.82842 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.005614 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.039443 B = 4986.070577 C = 5327.862531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.140 4.140 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.147 4.147 6 H 0.050 0.950 7 C -0.063 4.063 8 H 0.151 0.849 9 C -0.147 4.147 10 C -0.192 4.192 11 H 0.151 0.849 12 C 0.532 3.468 13 O -0.606 6.606 14 N -0.569 5.569 15 C 0.265 3.735 16 C -0.532 4.532 17 H 0.051 0.949 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.967 3.033 21 H -0.267 1.267 22 H -0.268 1.268 23 H -0.282 1.282 24 C 0.068 3.932 25 C -0.189 4.189 26 C -0.169 4.169 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.024 0.976 35 H -0.014 1.014 36 H 0.266 0.734 37 H 0.153 0.847 38 H 0.070 0.930 39 H 0.126 0.874 40 H 0.137 0.863 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.464 1.342 -8.624 21.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.158 4.158 3 H 0.111 0.889 4 C -0.192 4.192 5 C -0.165 4.165 6 H 0.069 0.931 7 C -0.081 4.081 8 H 0.169 0.831 9 C -0.184 4.184 10 C -0.213 4.213 11 H 0.168 0.832 12 C 0.322 3.678 13 O -0.488 6.488 14 N -0.297 5.297 15 C 0.144 3.856 16 C -0.571 4.571 17 H 0.069 0.931 18 C -0.191 4.191 19 N -0.570 5.570 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.193 1.193 23 H -0.208 1.208 24 C -0.036 4.036 25 C -0.226 4.226 26 C -0.208 4.208 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.154 0.846 34 H 0.042 0.958 35 H 0.004 0.996 36 H 0.075 0.925 37 H 0.170 0.830 38 H 0.089 0.911 39 H 0.144 0.856 40 H 0.155 0.845 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.979 1.719 -8.202 20.747 hybrid contribution 1.744 -0.314 0.943 2.007 sum -17.235 1.404 -7.259 18.754 Atomic orbital electron populations 1.21341 0.90513 1.02937 1.02355 1.22451 0.96964 0.93459 1.02917 0.88915 1.23099 1.02256 1.01592 0.92238 1.21661 0.99052 1.00865 0.94953 0.93111 1.21823 0.98955 0.94920 0.92377 0.83120 1.23056 1.01317 0.98451 0.95556 1.22307 0.88965 0.99016 1.10978 0.83181 1.20320 0.89591 0.77960 0.79939 1.90618 1.75939 1.44805 1.37437 1.47590 1.06807 1.46132 1.29175 1.18638 0.76045 0.95060 0.95854 1.21642 0.92286 1.13745 1.29420 0.93120 1.25853 0.96853 0.99018 0.97425 1.70066 1.02857 1.38705 1.45398 0.85373 0.78353 0.78745 0.78392 1.19085 1.19253 1.20831 1.21889 0.97999 0.98719 0.85017 1.23319 0.99496 0.96277 1.03555 1.23332 1.03780 0.97719 0.95944 0.91896 0.91372 0.91005 0.90336 0.86167 0.91078 0.84575 0.95842 0.99571 0.92463 0.83005 0.91110 0.85573 0.84534 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.10 71.98 0.66 -0.98 16 2 C -0.14 -2.91 6.41 -10.79 -0.07 -2.98 16 3 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.16 -3.38 9.90 30.60 0.30 -3.08 16 5 C -0.15 -4.00 5.26 -10.79 -0.06 -4.06 16 6 H 0.05 1.95 7.36 -2.39 -0.02 1.93 16 7 C -0.06 -1.42 5.08 -10.79 -0.05 -1.48 16 8 H 0.15 2.22 7.39 -2.39 -0.02 2.20 16 9 C -0.15 -3.77 9.76 30.60 0.30 -3.47 16 10 C -0.19 -5.69 4.73 -11.54 -0.05 -5.74 16 11 H 0.15 3.50 7.54 -2.39 -0.02 3.48 16 12 C 0.53 23.65 5.94 87.66 0.52 24.17 16 13 O -0.61 -33.91 16.06 -3.03 -0.05 -33.95 16 14 N -0.57 -25.42 2.79 -802.14 -2.24 -27.67 16 15 C 0.27 14.98 4.46 85.63 0.38 15.36 16 16 C -0.53 -31.73 9.19 25.60 0.24 -31.50 16 17 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 18 C 0.01 0.42 5.46 84.66 0.46 0.88 16 19 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 20 Si 0.97 46.23 29.54 68.60 2.03 48.26 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 24 C 0.07 2.20 6.03 44.99 0.27 2.47 16 25 C -0.19 -6.08 9.72 30.59 0.30 -5.79 16 26 C -0.17 -4.68 10.13 30.60 0.31 -4.37 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.82 7.45 -2.39 -0.02 0.80 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.12 1.99 8.05 -2.39 -0.02 1.97 16 32 H 0.07 2.32 7.84 -2.39 -0.02 2.30 16 33 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.02 1.35 6.33 -2.38 -0.02 1.34 16 35 H -0.01 -0.92 7.42 -2.39 -0.02 -0.93 16 36 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 37 H 0.15 3.74 6.78 -2.39 -0.02 3.72 16 38 H 0.07 2.98 6.29 -2.39 -0.02 2.97 16 39 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 Total: -1.00 -78.35 337.85 4.52 -73.83 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 1.00 Total: 17.69 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 3.50 Total: -20.56 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -1.96 Total: -85.27 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.05 Total: -33.95 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -78.35 4.52 -73.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717229211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.941 kcal (2) G-P(sol) polarization free energy of solvation -78.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds