Wall clock time and date at job start Mon Mar 30 2020 07:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 115.55180 * 2 1 4 4 C 1.53008 * 117.51590 * 214.29841 * 2 1 3 5 5 C 1.52999 * 117.49641 * 145.67047 * 2 1 3 6 6 H 1.09005 * 117.50076 * 215.02475 * 5 2 1 7 7 C 1.53002 * 117.50197 * 0.02562 * 5 2 1 8 8 H 1.08996 * 115.54780 * 34.32546 * 7 5 2 9 9 C 1.53010 * 117.49376 * 248.62318 * 7 5 2 10 10 C 1.52996 * 117.49770 * 180.02562 * 7 5 2 11 11 H 1.09003 * 117.50423 * 359.97275 * 10 7 5 12 12 C 1.50702 * 117.49493 * 214.97350 * 10 7 5 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 10 7 14 14 N 1.34777 * 119.99928 * 179.72213 * 12 10 7 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 10 16 16 C 1.50697 * 109.46949 * 90.00203 * 15 14 12 17 17 H 1.08004 * 120.00186 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00081 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00096 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00103 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47135 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47061 * 119.99902 * 20 18 16 23 23 H 1.48503 * 109.47075 * 240.00004 * 20 18 16 24 24 C 1.46506 * 120.00264 * 0.28128 * 14 12 10 25 25 C 1.52999 * 117.50003 * 188.62094 * 24 14 12 26 26 C 1.52999 * 117.50194 * 119.99533 * 24 14 12 27 27 H 1.08996 * 109.47409 * 274.33219 * 1 2 3 28 28 H 1.08999 * 109.47246 * 34.33480 * 1 2 3 29 29 H 1.09007 * 109.47021 * 154.32969 * 1 2 3 30 30 H 1.08996 * 117.49624 * 145.03278 * 4 2 1 31 31 H 1.08991 * 117.49927 * 0.02562 * 4 2 1 32 32 H 1.08996 * 117.49405 * 145.01924 * 9 7 5 33 33 H 1.08991 * 117.49902 * 359.97438 * 9 7 5 34 34 H 1.09001 * 109.47567 * 210.00057 * 15 14 12 35 35 H 1.09005 * 109.47076 * 330.00563 * 15 14 12 36 36 H 0.96991 * 119.99957 * 180.02562 * 19 18 16 37 37 H 1.08999 * 115.54206 * 334.32682 * 24 14 12 38 38 H 1.09000 * 117.49567 * 359.97438 * 25 24 14 39 39 H 1.08997 * 117.49783 * 145.01719 * 25 24 14 40 40 H 1.08998 * 117.50072 * 214.98319 * 26 24 14 41 41 H 1.09001 * 117.49525 * 0.02562 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2369 -1.1210 -0.7647 5 6 2.2364 -1.1208 0.7654 6 1 3.1711 -0.8746 1.2693 7 6 1.3587 -2.1561 1.4717 8 1 0.4241 -2.4022 0.9678 9 6 1.3583 -2.1558 3.0018 10 6 2.0652 -3.2764 2.2375 11 1 3.1552 -3.2763 2.2378 12 6 1.4154 -4.6362 2.2377 13 8 0.3718 -4.8096 1.6447 14 7 1.9973 -5.6610 2.8916 15 6 1.3688 -6.9843 2.8868 16 6 1.8765 -7.7772 1.7102 17 1 2.5958 -7.3394 1.0339 18 6 1.4228 -9.0617 1.4970 19 7 0.5465 -9.5947 2.3202 20 14 2.0528 -10.0448 0.0389 21 1 3.0238 -9.2245 -0.7289 22 1 2.7215 -11.2782 0.5253 23 1 0.9132 -10.4131 -0.8393 24 6 3.2583 -5.4517 3.6075 25 6 3.9719 -6.6881 4.1577 26 6 3.2691 -5.7219 5.1134 27 1 -0.3634 0.0776 1.0247 28 1 -0.3634 0.8486 -0.5796 29 1 -0.3633 -0.9263 -0.4452 30 1 3.1720 -0.8751 -1.2677 31 1 1.6120 -1.8585 -1.2682 32 1 0.4232 -2.4017 3.5047 33 1 1.9835 -1.4184 3.5050 34 1 1.6154 -7.5071 3.8109 35 1 0.2872 -6.8725 2.8101 36 1 0.2277 -10.4984 2.1705 37 1 3.8783 -4.6348 3.2383 38 1 3.5030 -7.6573 3.9875 39 1 5.0619 -6.6850 4.1505 40 1 3.8965 -5.0831 5.7349 41 1 2.3380 -6.0558 5.5714 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717229214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:14 Heat of formation + Delta-G solvation = 35.196356 kcal Electronic energy + Delta-G solvation = -19981.836701 eV Core-core repulsion = 17057.115301 eV Total energy + Delta-G solvation = -2924.721400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.68762 -38.25629 -36.76746 -35.05025 -33.17573 -31.90732 -28.55611 -27.76839 -24.54619 -23.35123 -22.47314 -21.93137 -21.46643 -21.08013 -19.21990 -18.06446 -17.03683 -16.37622 -15.93415 -15.14185 -14.79419 -14.45271 -14.15936 -13.69236 -13.54780 -13.17275 -12.88663 -12.56519 -12.40060 -12.14333 -11.64399 -11.51189 -11.43540 -11.09703 -11.00139 -10.91430 -10.79415 -10.57385 -10.50209 -10.42831 -10.12573 -10.06112 -9.74409 -9.48409 -9.33078 -8.83131 -8.42616 -7.49963 -6.03095 -4.07283 3.12558 3.30526 3.38300 3.42932 3.59449 3.85086 4.22887 4.42114 4.48882 4.57092 4.72658 4.90622 5.02735 5.14309 5.25978 5.29990 5.31437 5.33298 5.38344 5.40361 5.47678 5.53632 5.77105 5.79669 5.80848 5.83448 5.99233 6.02957 6.11804 6.18744 6.19932 6.28486 6.45971 6.48025 6.76198 7.07874 7.44587 7.56277 7.93765 8.24619 8.45284 8.92606 9.12777 9.57663 11.04835 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.005334 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.067478 B = 5248.557193 C = 6048.927173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.149 4.149 3 H 0.101 0.899 4 C -0.174 4.174 5 C -0.119 4.119 6 H 0.102 0.898 7 C -0.093 4.093 8 H 0.118 0.882 9 C -0.147 4.147 10 C -0.177 4.177 11 H 0.117 0.883 12 C 0.539 3.461 13 O -0.541 6.541 14 N -0.566 5.566 15 C 0.244 3.756 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.078 3.922 25 C -0.177 4.177 26 C -0.202 4.202 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.901 16.553 1.569 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.167 4.167 3 H 0.119 0.881 4 C -0.210 4.210 5 C -0.137 4.137 6 H 0.120 0.880 7 C -0.112 4.112 8 H 0.136 0.864 9 C -0.185 4.185 10 C -0.199 4.199 11 H 0.135 0.865 12 C 0.326 3.674 13 O -0.419 6.419 14 N -0.295 5.295 15 C 0.125 3.875 16 C -0.558 4.558 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.725 3.275 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.028 4.028 25 C -0.214 4.214 26 C -0.241 4.241 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.214 16.253 1.275 17.116 hybrid contribution 0.580 -0.777 -0.712 1.204 sum 5.795 15.475 0.563 16.534 Atomic orbital electron populations 1.21354 0.92799 1.01873 1.01979 1.22330 0.95606 0.93969 1.04835 0.88108 1.23122 1.02496 1.01414 0.94013 1.21804 0.99713 0.98508 0.93688 0.87971 1.21731 1.00259 0.95892 0.93291 0.86437 1.22909 1.02244 0.99034 0.94265 1.22357 0.99647 0.89970 1.07877 0.86539 1.19320 0.84675 0.84453 0.78995 1.90659 1.23729 1.83879 1.43592 1.47661 1.21332 1.11556 1.48988 1.19308 0.94396 0.76484 0.97330 1.21443 1.25183 0.98332 1.10865 0.92380 1.24928 0.94992 0.97600 0.96604 1.69943 1.30873 1.15531 1.37156 0.86458 0.78732 0.79752 0.82602 1.19792 1.20979 1.20919 1.21491 0.89098 1.00323 0.91856 1.23346 0.98884 0.96804 1.02380 1.23372 1.03032 1.04217 0.93439 0.91993 0.92598 0.92194 0.88973 0.88418 0.88413 0.88321 0.94754 0.93929 0.92811 0.86645 0.86395 0.88992 0.89050 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.05 37.16 0.34 -0.91 16 2 C -0.15 -1.52 6.41 -90.62 -0.58 -2.10 16 3 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.17 -1.95 9.90 -26.72 -0.26 -2.21 16 5 C -0.12 -1.37 5.85 -90.62 -0.53 -1.90 16 6 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 7 C -0.09 -1.32 4.69 -90.62 -0.43 -1.74 16 8 H 0.12 1.93 6.72 -51.93 -0.35 1.58 16 9 C -0.15 -1.92 9.95 -26.75 -0.27 -2.19 16 10 C -0.18 -2.80 5.02 -91.79 -0.46 -3.26 16 11 H 0.12 1.61 6.54 -51.93 -0.34 1.27 16 12 C 0.54 11.64 7.46 -10.98 -0.08 11.55 16 13 O -0.54 -13.98 15.84 5.55 0.09 -13.90 16 14 N -0.57 -12.38 2.79 -167.47 -0.47 -12.85 16 15 C 0.24 6.43 4.46 -5.20 -0.02 6.41 16 16 C -0.52 -14.80 9.19 -34.44 -0.32 -15.12 16 17 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 20 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.08 1.35 6.03 -67.93 -0.41 0.94 16 25 C -0.18 -2.95 9.72 -26.73 -0.26 -3.21 16 26 C -0.20 -3.04 10.13 -26.73 -0.27 -3.31 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.68 7.40 -51.92 -0.38 0.29 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.22 8.05 -51.93 -0.42 0.80 16 32 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.03 0.91 6.33 -51.93 -0.33 0.58 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.12 1.66 6.29 -51.93 -0.33 1.33 16 38 H 0.12 2.39 6.29 -51.93 -0.33 2.06 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.55 8.12 -51.93 -0.42 1.13 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -32.20 338.64 -9.84 -42.05 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.63 Total: 3.92 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -3.65 Total: -15.42 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.27 Total: -38.80 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.20 -9.84 -42.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717229214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.242 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds