Wall clock time and date at job start Mon Mar 30 2020 07:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47235 * 2 1 4 4 N 1.46897 * 109.47507 * 120.00546 * 2 1 3 5 5 C 1.46896 * 111.00327 * 164.72652 * 4 2 1 6 6 C 1.50705 * 109.46842 * 303.89053 * 5 4 2 7 7 C 1.41383 * 126.57833 * 90.00176 * 6 5 4 8 8 C 1.34515 * 106.83969 * 179.97438 * 7 6 5 9 9 O 1.34309 * 108.42104 * 359.97438 * 8 7 6 10 10 C 1.34300 * 109.47371 * 359.77655 * 9 8 7 11 11 C 1.46902 * 110.99649 * 288.67718 * 4 2 1 12 12 C 1.52998 * 109.47184 * 161.92021 * 11 4 2 13 13 C 1.50702 * 115.54919 * 66.60940 * 12 11 4 14 14 H 1.07998 * 119.99779 * 216.33350 * 13 12 11 15 15 C 1.37871 * 120.00173 * 36.05980 * 13 12 11 16 16 N 1.31509 * 120.00024 * 12.83541 * 15 13 12 17 17 Si 1.86805 * 120.00148 * 192.84101 * 15 13 12 18 18 H 1.48500 * 109.47238 * 64.99285 * 17 15 13 19 19 H 1.48500 * 109.46897 * 184.99491 * 17 15 13 20 20 H 1.48501 * 109.46563 * 304.99387 * 17 15 13 21 21 C 1.52999 * 117.50152 * 212.27996 * 12 11 4 22 22 C 1.53004 * 117.49763 * 280.93876 * 12 11 4 23 23 H 1.08997 * 109.47028 * 307.20389 * 1 2 3 24 24 H 1.08990 * 109.47328 * 67.21183 * 1 2 3 25 25 H 1.09005 * 109.46885 * 187.21131 * 1 2 3 26 26 H 1.09004 * 109.47063 * 240.00481 * 2 1 3 27 27 H 1.08992 * 109.47500 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47045 * 300.00398 * 3 2 1 29 29 H 1.08998 * 109.46733 * 59.99839 * 3 2 1 30 30 H 1.09001 * 109.47314 * 63.88706 * 5 4 2 31 31 H 1.09000 * 109.47441 * 183.89222 * 5 4 2 32 32 H 1.08000 * 126.58329 * 359.92316 * 7 6 5 33 33 H 1.08004 * 125.79050 * 180.02562 * 8 7 6 34 34 H 1.08001 * 125.78664 * 180.23725 * 10 9 8 35 35 H 1.08999 * 109.47100 * 41.91533 * 11 4 2 36 36 H 1.09000 * 109.46971 * 281.91893 * 11 4 2 37 37 H 0.97000 * 120.00441 * 174.95757 * 16 15 13 38 38 H 1.08996 * 117.50137 * 215.00589 * 21 12 11 39 39 H 1.09002 * 117.49376 * 0.02562 * 21 12 11 40 40 H 1.08993 * 117.49908 * 359.97438 * 22 12 11 41 41 H 1.09003 * 117.49588 * 144.97428 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0198 -0.6926 1.1993 5 6 3.4425 -1.0331 1.0666 6 6 3.6478 -1.8570 -0.1785 7 6 3.9337 -1.3689 -1.4742 8 6 4.0382 -2.4408 -2.2802 9 8 3.8324 -3.5460 -1.5453 10 6 3.6004 -3.1983 -0.2690 11 6 1.7812 0.1112 2.4056 12 6 1.8737 -0.7851 3.6421 13 6 3.2395 -1.3514 3.9337 14 1 3.3360 -2.3509 4.3313 15 6 4.3661 -0.5957 3.6875 16 7 4.2538 0.6915 3.4424 17 14 6.0520 -1.4001 3.7020 18 1 6.1423 -2.3804 2.5902 19 1 7.0981 -0.3601 3.5312 20 1 6.2556 -2.0993 4.9962 21 6 0.9845 -0.4345 4.8369 22 6 0.6615 -1.6574 3.9747 23 1 -0.3633 0.6214 0.8185 24 1 -0.3633 0.3980 -0.9473 25 1 -0.3633 -1.0196 0.1290 26 1 1.8934 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 4.0303 -0.1177 0.9975 31 1 3.7621 -1.6052 1.9376 32 1 4.0458 -0.3340 -1.7619 33 1 4.2521 -2.4168 -3.3386 34 1 3.4061 -3.8798 0.5459 35 1 0.7883 0.5579 2.3540 36 1 2.5312 0.8993 2.4712 37 1 5.0493 1.2373 3.3417 38 1 1.3874 -0.6135 5.8337 39 1 0.3333 0.4344 4.7417 40 1 -0.2020 -1.5924 3.3128 41 1 0.8519 -2.6410 4.4040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723736789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:36 Heat of formation + Delta-G solvation = 40.913436 kcal Electronic energy + Delta-G solvation = -21445.101081 eV Core-core repulsion = 18520.627592 eV Total energy + Delta-G solvation = -2924.473488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.35279 -39.85131 -37.36707 -34.62673 -34.06652 -32.09205 -30.34779 -28.04677 -27.69718 -27.54653 -24.85915 -22.83700 -22.37426 -21.63359 -20.99131 -19.91413 -18.14232 -17.90597 -16.90462 -16.66327 -16.38297 -15.83093 -15.64300 -15.31843 -14.69104 -14.57239 -14.45691 -13.77119 -13.70683 -13.50773 -13.33102 -12.98889 -12.88039 -12.74688 -12.59094 -12.30677 -12.17089 -12.06570 -11.85453 -11.68932 -11.47570 -11.08200 -10.81838 -10.51726 -10.33566 -9.87679 -9.33326 -8.74774 -7.94637 -6.04321 0.98582 1.38244 1.43363 1.46421 1.77015 2.38694 2.39536 3.01932 3.48415 3.87401 4.08704 4.11981 4.16910 4.31783 4.38252 4.46984 4.61231 4.67181 4.77622 4.82468 4.84743 4.89887 4.98607 5.04804 5.06045 5.06528 5.18747 5.25336 5.27738 5.39314 5.40628 5.45987 5.57428 5.58024 5.64246 5.66634 5.75834 6.11057 6.34311 6.53424 6.65956 6.75394 6.94055 7.47017 8.93175 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.010270 C = 0.007628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.610836 B = 2725.763913 C = 3669.943058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.064 3.936 3 C -0.168 4.168 4 N -0.513 5.513 5 C 0.119 3.881 6 C -0.184 4.184 7 C -0.229 4.229 8 C -0.037 4.037 9 O -0.187 6.187 10 C -0.043 4.043 11 C 0.094 3.906 12 C 0.037 3.963 13 C -0.494 4.494 14 H 0.047 0.953 15 C 0.054 3.946 16 N -0.889 5.889 17 Si 0.915 3.085 18 H -0.266 1.266 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.208 4.208 22 C -0.182 4.182 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.011 0.989 31 H 0.103 0.897 32 H 0.146 0.854 33 H 0.241 0.759 34 H 0.208 0.792 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.259 0.741 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.476 -2.170 -10.810 11.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.044 4.044 3 C -0.226 4.226 4 N -0.236 5.236 5 C -0.008 4.008 6 C -0.185 4.185 7 C -0.248 4.248 8 C -0.103 4.103 9 O -0.083 6.083 10 C -0.111 4.111 11 C -0.033 4.033 12 C 0.036 3.964 13 C -0.532 4.532 14 H 0.066 0.934 15 C -0.148 4.148 16 N -0.527 5.527 17 Si 0.741 3.259 18 H -0.191 1.191 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.247 4.247 22 C -0.219 4.219 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.121 0.879 32 H 0.164 0.836 33 H 0.257 0.743 34 H 0.224 0.776 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.619 -2.737 -10.969 11.604 hybrid contribution 1.433 0.901 0.606 1.797 sum -1.187 -1.836 -10.363 10.591 Atomic orbital electron populations 1.21729 0.94138 1.01560 1.01344 1.21877 0.95993 0.92215 0.94324 1.22300 1.00106 0.98592 1.01642 1.62161 1.16137 1.43646 1.01640 1.20809 0.88918 0.96358 0.94706 1.20850 1.06236 0.94775 0.96668 1.21924 1.09099 1.00734 0.93060 1.24638 1.04507 0.82401 0.98796 1.84039 1.69477 1.35570 1.19212 1.24031 1.05982 0.96254 0.84861 1.21658 0.98319 0.95518 0.87820 1.19044 0.89301 0.96429 0.91630 1.20593 0.90225 1.00100 1.42239 0.93437 1.25266 1.00519 0.94918 0.94050 1.69890 1.29107 1.05023 1.48712 0.86310 0.81538 0.79071 0.79001 1.19056 1.21245 1.20005 1.22942 1.06477 0.98265 0.97002 1.22701 1.01375 0.93959 1.03852 0.93805 0.90946 0.92838 0.89970 0.94747 0.91071 0.93785 0.97110 0.87911 0.83577 0.74276 0.77561 0.94754 0.90748 0.93072 0.91539 0.91028 0.90185 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.12 71.98 0.66 -3.31 16 2 C 0.06 2.25 2.69 44.92 0.12 2.37 16 3 C -0.17 -5.72 8.42 71.98 0.61 -5.11 16 4 N -0.51 -21.31 4.43 -875.52 -3.88 -25.18 16 5 C 0.12 5.19 3.82 85.56 0.33 5.52 16 6 C -0.18 -6.85 4.71 -19.94 -0.09 -6.94 16 7 C -0.23 -7.08 9.09 22.19 0.20 -6.87 16 8 C -0.04 -0.93 12.09 66.97 0.81 -0.12 16 9 O -0.19 -5.62 10.65 -2.51 -0.03 -5.65 16 10 C -0.04 -1.48 12.01 66.97 0.80 -0.68 16 11 C 0.09 4.30 3.23 86.30 0.28 4.58 16 12 C 0.04 1.77 1.96 -52.93 -0.10 1.67 16 13 C -0.49 -25.78 7.10 25.60 0.18 -25.59 16 14 H 0.05 2.53 7.85 -2.91 -0.02 2.50 16 15 C 0.05 2.75 3.10 84.65 0.26 3.02 16 16 N -0.89 -47.12 10.01 21.44 0.21 -46.91 16 17 Si 0.91 41.50 28.79 68.60 1.98 43.48 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 C -0.21 -9.43 9.92 30.62 0.30 -9.13 16 22 C -0.18 -7.86 9.96 30.62 0.30 -7.55 16 23 H 0.04 1.38 6.75 -2.39 -0.02 1.36 16 24 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.08 2.81 5.16 -2.38 -0.01 2.80 16 27 H 0.03 1.28 6.99 -2.39 -0.02 1.26 16 28 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.04 1.62 6.60 -2.39 -0.02 1.61 16 30 H 0.01 0.52 6.42 -2.39 -0.02 0.50 16 31 H 0.10 5.02 3.42 -2.39 -0.01 5.01 16 32 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.24 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.21 6.53 8.06 -2.91 -0.02 6.50 16 35 H 0.03 1.51 6.11 -2.39 -0.01 1.49 16 36 H 0.07 3.81 4.53 -2.39 -0.01 3.80 16 37 H 0.26 13.42 8.32 -92.71 -0.77 12.65 16 38 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -56.58 315.73 3.96 -52.62 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 1.01 Total: 29.79 kcal Atomic # 6 Polarization: -52.81 SS G_CDS: 4.66 Total: -48.15 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -3.66 Total: -72.09 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.03 Total: -5.65 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.98 Total: 43.48 kcal Total: -56.58 3.96 -52.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723736789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.532 kcal (2) G-P(sol) polarization free energy of solvation -56.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds