Wall clock time and date at job start Mon Mar 30 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47057 * 2 1 4 4 C 1.53001 * 109.47277 * 240.00171 * 2 1 3 5 5 N 1.46900 * 109.47012 * 59.99790 * 4 2 1 6 6 C 1.52997 * 109.47118 * 119.99970 * 2 1 3 7 7 O 1.42901 * 109.47052 * 300.00087 * 6 2 1 8 8 C 1.42902 * 114.00031 * 180.02562 * 7 6 2 9 9 C 1.50698 * 109.47264 * 179.97438 * 8 7 6 10 10 C 1.38632 * 119.75213 * 269.72235 * 9 8 7 11 11 C 1.37614 * 120.25123 * 179.71891 * 10 9 8 12 12 C 1.40719 * 119.74124 * 0.57305 * 11 10 9 13 13 C 1.41395 * 120.24246 * 179.67718 * 12 11 10 14 14 H 1.07998 * 119.99970 * 155.30784 * 13 12 11 15 15 C 1.39951 * 120.00207 * 335.31835 * 13 12 11 16 16 N 1.30818 * 119.99753 * 342.22830 * 15 13 12 17 17 Si 1.86797 * 120.00021 * 162.22875 * 15 13 12 18 18 H 1.48500 * 109.47048 * 94.66426 * 17 15 13 19 19 H 1.48498 * 109.47252 * 214.66382 * 17 15 13 20 20 H 1.48496 * 109.47461 * 334.66371 * 17 15 13 21 21 C 1.40704 * 119.51466 * 359.70404 * 12 11 10 22 22 C 1.37620 * 119.74516 * 359.97438 * 21 12 11 23 23 H 1.09004 * 109.47441 * 300.00158 * 1 2 3 24 24 H 1.09000 * 109.47577 * 59.99778 * 1 2 3 25 25 H 1.08998 * 109.47484 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47033 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46890 * 300.00042 * 3 2 1 28 28 H 1.09004 * 109.47124 * 59.99648 * 3 2 1 29 29 H 1.08993 * 109.47292 * 180.02562 * 4 2 1 30 30 H 1.08998 * 109.46633 * 300.00239 * 4 2 1 31 31 H 1.00895 * 110.99978 * 180.02562 * 5 4 2 32 32 H 1.00900 * 111.00213 * 303.95349 * 5 4 2 33 33 H 1.09002 * 109.47121 * 180.02562 * 6 2 1 34 34 H 1.08991 * 109.47294 * 59.99919 * 6 2 1 35 35 H 1.08998 * 109.47199 * 59.99761 * 8 7 6 36 36 H 1.09001 * 109.47096 * 299.99734 * 8 7 6 37 37 H 1.08005 * 119.87401 * 359.97438 * 10 9 8 38 38 H 1.07997 * 120.13194 * 180.28480 * 11 10 9 39 39 H 0.97004 * 119.99893 * 180.02562 * 16 15 13 40 40 H 1.08007 * 120.13445 * 179.97438 * 21 12 11 41 41 H 1.08000 * 119.87742 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5503 -0.0287 -2.4487 6 6 2.0400 -0.7212 1.2492 7 8 1.5636 -0.0476 2.4160 8 6 1.9857 -0.6435 3.6443 9 6 1.4293 0.1443 4.8022 10 6 2.1606 1.1952 5.3340 11 6 1.6598 1.9251 6.3876 12 6 0.4057 1.5936 6.9330 13 6 -0.1159 2.3321 8.0200 14 1 -1.1825 2.3689 8.1856 15 6 0.7499 3.0158 8.8812 16 7 2.0211 2.7082 8.9102 17 14 0.0903 4.3673 9.9892 18 1 -0.2304 3.8007 11.3239 19 1 1.1159 5.4311 10.1366 20 1 -1.1387 4.9445 9.3882 21 6 -0.3252 0.5213 6.3890 22 6 0.1923 -0.1906 5.3310 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1299 -0.7216 -1.2490 30 1 1.6766 -1.7488 -1.2492 31 1 1.8735 -0.4864 -3.2877 32 1 0.5438 0.0414 -2.4402 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7488 1.2493 35 1 3.0746 -0.6416 3.6938 36 1 1.6216 -1.6697 3.6942 37 1 3.1253 1.4445 4.9171 38 1 2.2291 2.7463 6.7974 39 1 2.6211 3.1818 9.5074 40 1 -1.2886 0.2579 6.8001 41 1 -0.3671 -1.0138 4.9115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723855492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:25 Heat of formation + Delta-G solvation = -48.692565 kcal Electronic energy + Delta-G solvation = -19421.966808 eV Core-core repulsion = 16493.607711 eV Total energy + Delta-G solvation = -2928.359096 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.72186 -37.59499 -36.12309 -33.74280 -32.18026 -30.39461 -29.25381 -27.16301 -27.04642 -26.24501 -24.28227 -23.29113 -20.97699 -19.98504 -18.79671 -17.29612 -16.46855 -16.04337 -15.59132 -15.34185 -14.92979 -14.47881 -14.01456 -13.85836 -13.47483 -13.31847 -13.07360 -12.62158 -12.22744 -12.07723 -11.91761 -11.63902 -11.51323 -11.40697 -11.11786 -11.02335 -10.78647 -10.67994 -10.51919 -10.38980 -10.29284 -9.57580 -9.39638 -9.16733 -9.05604 -8.86551 -7.44787 -7.33453 -6.77646 -4.36181 2.69887 3.06786 3.09658 3.10313 3.16287 3.92559 4.04713 4.53184 4.70515 4.82985 4.91443 5.11034 5.33754 5.46570 5.52810 5.62108 5.74242 5.77370 5.85019 5.89982 5.92339 6.08238 6.15859 6.19587 6.30909 6.38657 6.42166 6.47841 6.61319 6.91080 6.95963 7.06896 7.21254 7.29364 7.37493 7.62156 7.71594 7.89332 8.05650 8.13594 8.29859 8.64065 8.88907 8.97625 10.16973 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.038917 B = 0.003464 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.302780 B = 8081.988852 C = 8177.717760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.127 4.127 4 C 0.073 3.927 5 N -0.847 5.847 6 C 0.069 3.931 7 O -0.375 6.375 8 C 0.129 3.871 9 C -0.221 4.221 10 C -0.080 4.080 11 C -0.169 4.169 12 C 0.116 3.884 13 C -0.461 4.461 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.791 5.791 17 Si 0.908 3.092 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.230 4.230 22 C -0.070 4.070 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.025 0.975 31 H 0.338 0.662 32 H 0.341 0.659 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.281 0.719 40 H 0.092 0.908 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -4.988 -14.370 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.184 4.184 4 C -0.058 4.058 5 N -0.377 5.377 6 C -0.009 4.009 7 O -0.294 6.294 8 C 0.053 3.947 9 C -0.222 4.222 10 C -0.098 4.098 11 C -0.188 4.188 12 C 0.113 3.887 13 C -0.490 4.490 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.416 5.416 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.184 1.184 21 C -0.250 4.250 22 C -0.088 4.088 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.287 -4.148 -13.969 14.629 hybrid contribution -0.444 -0.690 0.410 0.917 sum 0.844 -4.839 -13.559 14.421 Atomic orbital electron populations 1.21803 0.94227 1.01207 1.02490 1.20546 0.96406 0.97002 0.92154 1.21651 1.00106 0.94505 1.02187 1.21739 0.99930 0.94240 0.89911 1.58696 1.16691 1.58336 1.04023 1.22367 0.97221 0.94833 0.86467 1.88067 1.74500 1.54046 1.12826 1.21080 0.96514 0.94539 0.82530 1.18746 0.98511 1.04260 1.00733 1.20520 0.97576 0.95203 0.96532 1.21285 0.98515 1.01710 0.97303 1.17647 0.91318 0.89061 0.90652 1.19620 0.94657 1.25954 1.08816 0.90387 1.25932 0.94479 0.96599 0.97193 1.69830 1.04712 1.35049 1.32031 0.86314 0.79962 0.80585 0.79968 1.19575 1.20005 1.18377 1.20946 1.01662 1.00032 1.02325 1.20355 0.94239 0.98107 0.96094 0.90953 0.92839 0.93508 0.93531 0.92024 0.91887 0.91065 0.95699 0.84949 0.84509 0.94048 0.94338 0.94464 0.94622 0.89517 0.86445 0.90845 0.88974 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.00 37.16 0.30 -1.40 16 2 C -0.06 -0.74 0.68 -154.51 -0.10 -0.84 16 3 C -0.13 -1.69 8.17 37.16 0.30 -1.39 16 4 C 0.07 0.71 5.75 -3.82 -0.02 0.69 16 5 N -0.85 -7.31 8.83 -10.37 -0.09 -7.40 16 6 C 0.07 0.96 4.81 37.16 0.18 1.13 16 7 O -0.37 -6.77 8.98 -35.23 -0.32 -7.09 16 8 C 0.13 2.41 6.05 36.00 0.22 2.63 16 9 C -0.22 -5.03 5.53 -104.33 -0.58 -5.61 16 10 C -0.08 -1.93 9.67 -39.66 -0.38 -2.31 16 11 C -0.17 -4.48 8.70 -38.87 -0.34 -4.81 16 12 C 0.12 3.14 5.57 -106.83 -0.60 2.55 16 13 C -0.46 -12.36 9.05 -37.74 -0.34 -12.71 16 14 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 15 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 16 N -0.79 -20.54 10.97 55.55 0.61 -19.93 16 17 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 21 C -0.23 -5.78 9.80 -38.88 -0.38 -6.16 16 22 C -0.07 -1.61 9.67 -39.66 -0.38 -2.00 16 23 H 0.07 1.06 7.68 -51.93 -0.40 0.66 16 24 H 0.05 0.56 6.57 -51.93 -0.34 0.22 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.78 7.60 -51.93 -0.39 0.38 16 28 H 0.06 0.98 7.68 -51.93 -0.40 0.58 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.34 2.24 9.08 -39.29 -0.36 1.88 16 32 H 0.34 2.73 7.03 -39.29 -0.28 2.46 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.04 0.61 8.08 -51.93 -0.42 0.20 16 37 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 38 H 0.12 3.20 6.18 -52.49 -0.32 2.87 16 39 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 40 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -28.07 333.48 -8.71 -36.78 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.68 Total: 7.34 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: -2.22 Total: -28.40 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.52 Total: -27.33 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.32 Total: -7.09 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.07 -8.71 -36.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723855492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.917 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds