Wall clock time and date at job start Mon Mar 30 2020 07:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47248 * 2 1 4 4 N 1.46906 * 109.47053 * 240.00673 * 2 1 3 5 5 C 1.46904 * 111.00071 * 84.99749 * 4 2 1 6 6 C 1.53002 * 109.47049 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.46891 * 59.99568 * 6 5 4 8 8 O 1.42900 * 109.46924 * 300.00176 * 6 5 4 9 9 C 1.50690 * 109.46960 * 179.97438 * 6 5 4 10 10 H 1.08001 * 120.00448 * 0.02562 * 9 6 5 11 11 C 1.37885 * 120.00016 * 179.97438 * 9 6 5 12 12 N 1.31509 * 119.99656 * 0.02562 * 11 9 6 13 13 Si 1.86802 * 120.00064 * 180.02562 * 11 9 6 14 14 H 1.48495 * 109.46915 * 60.00045 * 13 11 9 15 15 H 1.48499 * 109.47073 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47078 * 300.00166 * 13 11 9 17 17 C 1.52999 * 109.47628 * 120.00681 * 2 1 3 18 18 H 1.08996 * 109.46929 * 59.99225 * 17 2 1 19 19 C 1.52997 * 109.47317 * 180.02562 * 17 2 1 20 20 C 1.50706 * 109.46573 * 300.00046 * 17 2 1 21 21 C 1.38232 * 120.00143 * 299.72250 * 20 17 2 22 22 C 1.38232 * 120.00231 * 179.79026 * 21 20 17 23 23 C 1.38236 * 119.99863 * 0.44175 * 22 21 20 24 24 C 1.38247 * 119.99799 * 359.81521 * 23 22 21 25 25 C 1.38225 * 119.99616 * 359.97298 * 24 23 22 26 26 H 1.09002 * 109.46838 * 299.99037 * 1 2 3 27 27 H 1.09001 * 109.47142 * 59.99487 * 1 2 3 28 28 H 1.08996 * 109.46698 * 179.97438 * 1 2 3 29 29 H 1.00897 * 110.99665 * 208.95235 * 4 2 1 30 30 H 1.08999 * 109.46647 * 300.00163 * 5 4 2 31 31 H 1.08996 * 109.46868 * 59.99743 * 5 4 2 32 32 H 0.96697 * 113.99887 * 299.99702 * 8 6 5 33 33 H 0.97001 * 119.99930 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.47153 * 299.99641 * 19 17 2 35 35 H 1.09001 * 109.46832 * 179.97438 * 19 17 2 36 36 H 1.09004 * 109.47261 * 59.99813 * 19 17 2 37 37 H 1.08002 * 119.99951 * 359.97438 * 21 20 17 38 38 H 1.07993 * 120.00314 * 180.27371 * 22 21 20 39 39 H 1.08003 * 120.00025 * 179.83335 * 23 22 21 40 40 H 1.07995 * 119.99459 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.99867 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2228 -2.3470 6 6 2.5950 -0.5328 -3.5747 7 1 1.9183 -1.3562 -3.8031 8 8 3.8999 -1.0495 -3.3054 9 6 2.6587 0.4058 -4.7518 10 1 2.3636 1.4383 -4.6358 11 6 3.0948 -0.0531 -5.9767 12 7 3.4546 -1.3101 -6.1177 13 14 3.1745 1.1107 -7.4357 14 1 4.0961 2.2326 -7.1241 15 1 3.6731 0.3776 -8.6270 16 1 1.8184 1.6471 -7.7157 17 6 2.0401 -0.7214 1.2491 18 1 1.6767 -1.7490 1.2490 19 6 3.5701 -0.7208 1.2494 20 6 1.5378 -0.0110 2.4797 21 6 1.8764 1.3107 2.7014 22 6 1.4120 1.9636 3.8279 23 6 0.6166 1.2920 4.7373 24 6 0.2823 -0.0315 4.5183 25 6 0.7431 -0.6829 3.3896 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 2.9173 -1.1204 -1.0289 30 1 1.0870 0.6165 -2.5525 31 1 2.7587 1.0464 -2.1182 32 1 4.5555 -0.3710 -3.0938 33 1 3.7618 -1.6329 -6.9794 34 1 3.9338 -1.2343 0.3593 35 1 3.9335 -1.2343 2.1395 36 1 3.9331 0.3071 1.2497 37 1 2.5013 1.8342 1.9930 38 1 1.6729 2.9975 3.9989 39 1 0.2560 1.8013 5.6188 40 1 -0.3395 -0.5560 5.2286 41 1 0.4817 -1.7167 3.2182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809578643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:09 Heat of formation + Delta-G solvation = -61.366661 kcal Electronic energy + Delta-G solvation = -19756.665900 eV Core-core repulsion = 16827.757214 eV Total energy + Delta-G solvation = -2928.908686 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67902 -38.77816 -37.27584 -34.33884 -34.09175 -31.75109 -31.14776 -30.33358 -29.15731 -26.12100 -24.89158 -23.55440 -22.82539 -22.13226 -20.52628 -19.01923 -17.77015 -17.29610 -16.65300 -16.47654 -16.18214 -15.71900 -15.54258 -15.20760 -14.86943 -14.43431 -14.37841 -14.07095 -13.84923 -13.51026 -13.31350 -13.11582 -13.05721 -12.77769 -12.74739 -12.57620 -12.44406 -12.11535 -12.05288 -11.83516 -11.62316 -11.37568 -11.01834 -10.70369 -10.15505 -9.77160 -9.55839 -9.20517 -8.13333 -6.39614 0.50288 0.55161 1.40647 1.42518 1.50736 2.38749 2.91748 3.12142 3.30704 3.75559 3.87628 4.07648 4.18416 4.21021 4.29304 4.33469 4.37983 4.49110 4.54785 4.56606 4.65796 4.69128 4.81279 4.85641 4.90366 5.05465 5.07513 5.13662 5.18635 5.23334 5.29095 5.38285 5.62306 5.63999 5.67498 5.74872 5.80688 6.03910 6.17346 6.26759 6.61609 6.75166 7.33071 7.54430 8.91079 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041051 B = 0.003649 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.916548 B = 7670.590616 C = 7843.222164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.094 3.906 3 H 0.035 0.965 4 N -0.690 5.690 5 C 0.058 3.942 6 C 0.234 3.766 7 H 0.022 0.978 8 O -0.576 6.576 9 C -0.590 4.590 10 H 0.058 0.942 11 C 0.026 3.974 12 N -0.899 5.899 13 Si 0.961 3.039 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.269 1.269 17 C -0.047 4.047 18 H 0.082 0.918 19 C -0.146 4.146 20 C -0.073 4.073 21 C -0.129 4.129 22 C -0.126 4.126 23 C -0.132 4.132 24 C -0.123 4.123 25 C -0.128 4.128 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.344 0.656 30 H 0.059 0.941 31 H 0.021 0.979 32 H 0.353 0.647 33 H 0.262 0.738 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.116 0.884 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 5.024 21.371 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.015 4.015 3 H 0.053 0.947 4 N -0.325 5.325 5 C -0.072 4.072 6 C 0.176 3.824 7 H 0.040 0.960 8 O -0.380 6.380 9 C -0.628 4.628 10 H 0.076 0.924 11 C -0.177 4.177 12 N -0.535 5.535 13 Si 0.785 3.215 14 H -0.191 1.191 15 H -0.210 1.210 16 H -0.194 1.194 17 C -0.066 4.066 18 H 0.100 0.900 19 C -0.204 4.204 20 C -0.073 4.073 21 C -0.148 4.148 22 C -0.144 4.144 23 C -0.150 4.150 24 C -0.141 4.141 25 C -0.146 4.146 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.166 0.834 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.197 0.803 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.852 4.053 20.962 21.895 hybrid contribution 1.048 1.418 -0.886 1.973 sum -3.804 5.471 20.076 21.153 Atomic orbital electron populations 1.21718 0.94641 1.01819 1.00707 1.21553 0.95960 0.95269 0.88743 0.94684 1.60526 1.34394 1.33371 1.04183 1.22434 0.99516 0.93545 0.91660 1.19205 0.81295 0.92157 0.89743 0.96041 1.86520 1.21394 1.37759 1.92288 1.22002 1.47232 0.97232 0.96318 0.92360 1.25915 0.93732 0.96433 1.01614 1.70215 1.42346 1.16112 1.24876 0.85598 0.78817 0.78883 0.78177 1.19128 1.20953 1.19388 1.20236 0.96031 0.99370 0.90990 0.89953 1.21879 0.94036 1.02179 1.02258 1.19767 0.97617 0.94404 0.95558 1.21129 1.00805 0.94549 0.98268 1.21389 0.97999 1.00679 0.94310 1.21449 0.98528 0.95027 1.00020 1.21424 0.99906 0.95250 0.97515 1.21279 0.98039 1.00544 0.94707 0.91769 0.94126 0.92532 0.83391 0.92268 0.96071 0.80267 0.92957 0.92538 0.91239 0.92515 0.86551 0.84635 0.84092 0.84131 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.17 71.98 0.66 -3.05 16 2 C 0.09 2.74 2.05 44.91 0.09 2.84 16 3 H 0.04 1.05 7.06 -2.39 -0.02 1.04 16 4 N -0.69 -24.92 6.31 -491.55 -3.10 -28.02 16 5 C 0.06 2.43 5.13 86.30 0.44 2.87 16 6 C 0.23 12.19 3.10 29.85 0.09 12.29 16 7 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 8 O -0.58 -29.73 12.07 -148.98 -1.80 -31.53 16 9 C -0.59 -32.85 8.76 25.60 0.22 -32.62 16 10 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 11 C 0.03 1.45 5.40 84.66 0.46 1.91 16 12 N -0.90 -54.40 12.84 21.45 0.28 -54.13 16 13 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 C -0.05 -1.15 2.29 -11.54 -0.03 -1.18 16 18 H 0.08 2.05 7.88 -2.39 -0.02 2.03 16 19 C -0.15 -3.39 8.77 71.98 0.63 -2.76 16 20 C -0.07 -1.60 3.52 -19.87 -0.07 -1.67 16 21 C -0.13 -2.75 8.71 22.27 0.19 -2.55 16 22 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 23 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 24 C -0.12 -2.06 10.05 22.27 0.22 -1.83 16 25 C -0.13 -2.51 9.67 22.27 0.22 -2.29 16 26 H 0.06 1.62 7.22 -2.39 -0.02 1.60 16 27 H 0.04 1.24 7.45 -2.39 -0.02 1.22 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.34 12.37 5.56 -89.70 -0.50 11.87 16 30 H 0.06 2.52 7.44 -2.39 -0.02 2.50 16 31 H 0.02 0.86 8.05 -2.39 -0.02 0.84 16 32 H 0.35 15.99 9.04 -74.06 -0.67 15.32 16 33 H 0.26 14.99 8.31 -92.71 -0.77 14.21 16 34 H 0.06 1.44 6.21 -2.39 -0.01 1.42 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.28 7.37 -2.38 -0.02 1.26 16 37 H 0.12 2.46 7.10 -2.91 -0.02 2.44 16 38 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 41 H 0.13 2.24 7.95 -2.91 -0.02 2.21 16 Total: -1.00 -64.48 331.76 0.83 -63.64 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.15 Total: 36.39 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 3.58 Total: -32.00 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -2.83 Total: -82.15 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.80 Total: -31.53 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -64.48 0.83 -63.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809578643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.275 kcal (2) G-P(sol) polarization free energy of solvation -64.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds