Wall clock time and date at job start Mon Mar 30 2020 07:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50694 * 120.00103 * 2 1 4 4 N 1.46503 * 109.47183 * 124.99672 * 3 2 1 5 5 C 1.46500 * 119.99822 * 90.00117 * 4 3 2 6 6 C 1.50706 * 109.46953 * 89.99511 * 5 4 3 7 7 H 1.07999 * 120.00193 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99398 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99350 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00608 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47326 * 270.00340 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00090 * 10 8 6 13 13 H 1.48498 * 109.47210 * 149.99801 * 10 8 6 14 14 C 1.34777 * 120.00054 * 269.99794 * 4 3 2 15 15 O 1.21275 * 119.99803 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00130 * 0.02562 * 14 4 3 17 17 C 1.52998 * 109.47238 * 179.97438 * 16 14 4 18 18 H 1.09000 * 109.63991 * 305.42101 * 17 16 14 19 19 C 1.53024 * 109.64105 * 66.05440 * 17 16 14 20 20 C 1.50071 * 110.14615 * 169.11954 * 19 17 16 21 21 C 1.29435 * 124.07802 * 342.87236 * 20 19 17 22 22 C 1.50068 * 124.07458 * 0.46716 * 21 20 19 23 23 C 1.53025 * 110.14984 * 342.86760 * 22 21 20 24 24 H 1.07999 * 119.99886 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.99726 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99560 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47133 * 4.99913 * 3 2 1 28 28 H 1.09002 * 109.47344 * 245.00245 * 3 2 1 29 29 H 1.09000 * 109.47175 * 329.99940 * 5 4 3 30 30 H 1.08993 * 109.47452 * 209.99730 * 5 4 3 31 31 H 0.97005 * 119.99661 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.47151 * 299.99768 * 16 14 4 33 33 H 1.08998 * 109.47139 * 59.99459 * 16 14 4 34 34 H 1.08994 * 109.36045 * 289.33256 * 19 17 16 35 35 H 1.09002 * 109.35863 * 48.91414 * 19 17 16 36 36 H 1.08002 * 117.95555 * 162.89527 * 20 19 17 37 37 H 1.08000 * 117.96597 * 180.48804 * 21 20 19 38 38 H 1.09002 * 109.36086 * 222.66236 * 22 21 20 39 39 H 1.08999 * 109.24692 * 103.00475 * 22 21 20 40 40 H 1.08999 * 109.64575 * 289.75369 * 23 22 21 41 41 H 1.08996 * 109.82205 * 169.22287 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3590 0.8256 0.9695 6 6 5.2616 1.9480 0.5259 7 1 4.8588 2.9393 0.3797 8 6 6.6020 1.7093 0.3077 9 7 7.3897 2.6889 -0.0789 10 14 7.2990 -0.0051 0.5613 11 1 7.7563 -0.1506 1.9665 12 1 6.2473 -1.0140 0.2760 13 1 8.4471 -0.2135 -0.3571 14 6 2.5937 1.8223 2.3214 15 8 3.3639 1.8449 3.2579 16 6 1.1892 2.3426 2.4881 17 6 0.9954 2.8367 3.9231 18 1 1.2548 2.0419 4.6224 19 6 1.8847 4.0570 4.1715 20 6 1.5156 4.7095 5.4715 21 6 0.4020 4.5008 6.0973 22 6 -0.6715 3.5694 5.6154 23 6 -0.4666 3.2511 4.1327 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4026 -0.9314 29 1 4.3667 0.0350 0.2192 30 1 4.7142 0.4278 1.9201 31 1 8.3328 2.5211 -0.2321 32 1 1.0221 3.1664 1.7941 33 1 0.4784 1.5428 2.2804 34 1 2.9277 3.7425 4.2083 35 1 1.7534 4.7712 3.3586 36 1 2.2232 5.3963 5.9121 37 1 0.2348 5.0301 7.0237 38 1 -1.6456 4.0389 5.7528 39 1 -0.6311 2.6455 6.1922 40 1 -0.6862 4.1352 3.5343 41 1 -1.1249 2.4348 3.8355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820223337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:34 Heat of formation + Delta-G solvation = -14.640899 kcal Electronic energy + Delta-G solvation = -20198.786368 eV Core-core repulsion = 17271.903863 eV Total energy + Delta-G solvation = -2926.882505 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63903 -38.00264 -35.72890 -33.37888 -32.44822 -32.08222 -30.61649 -28.66389 -26.83717 -25.43309 -23.18571 -22.41366 -20.79699 -19.99728 -18.25067 -17.82228 -16.89261 -16.49848 -15.88832 -15.35062 -14.99698 -14.38834 -14.17366 -13.98205 -13.66370 -13.30055 -12.94219 -12.65437 -12.47515 -12.31315 -12.20701 -11.98686 -11.82255 -11.50135 -11.32130 -11.14469 -10.82930 -10.52709 -10.51115 -10.33638 -10.13581 -9.99633 -9.56982 -9.35856 -8.92933 -8.73969 -8.58176 -7.71590 -6.08197 -4.06667 2.31325 2.44010 3.29469 3.35436 3.37348 3.40215 3.92384 4.40118 4.78504 4.81891 4.91746 5.08170 5.19270 5.25106 5.27579 5.33300 5.43117 5.47215 5.57981 5.65369 5.72646 5.82585 5.89829 5.92601 5.96195 5.97240 6.08627 6.11981 6.30405 6.53431 6.61528 6.67031 6.70895 6.80380 6.81844 6.97092 7.13277 7.36529 7.62211 8.28274 8.48107 8.94339 9.03553 9.52522 11.05225 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018820 B = 0.005769 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.399135 B = 4852.709214 C = 5905.150568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C 0.135 3.865 4 N -0.592 5.592 5 C 0.215 3.785 6 C -0.527 4.527 7 H 0.074 0.926 8 C 0.072 3.928 9 N -0.898 5.898 10 Si 0.876 3.124 11 H -0.274 1.274 12 H -0.266 1.266 13 H -0.285 1.285 14 C 0.509 3.491 15 O -0.537 6.537 16 C -0.137 4.137 17 C -0.068 4.068 18 H 0.078 0.922 19 C -0.096 4.096 20 C -0.136 4.136 21 C -0.176 4.176 22 C -0.086 4.086 23 C -0.116 4.116 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.667 -1.168 4.704 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.178 4.178 3 C 0.011 3.989 4 N -0.323 5.323 5 C 0.095 3.905 6 C -0.565 4.565 7 H 0.092 0.908 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.703 3.297 11 H -0.199 1.199 12 H -0.191 1.191 13 H -0.211 1.211 14 C 0.297 3.703 15 O -0.414 6.414 16 C -0.177 4.177 17 C -0.087 4.087 18 H 0.097 0.903 19 C -0.132 4.132 20 C -0.154 4.154 21 C -0.194 4.194 22 C -0.123 4.123 23 C -0.153 4.153 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.026 -1.107 5.149 17.822 hybrid contribution 0.563 -0.783 -0.015 0.964 sum -16.463 -1.889 5.134 17.348 Atomic orbital electron populations 1.23776 0.95684 1.01614 1.02397 1.23548 0.96154 0.99824 0.98228 1.20602 0.92337 0.94182 0.91746 1.47916 1.13514 1.61417 1.09444 1.19650 0.78418 0.95274 0.97197 1.21330 0.92936 0.96622 1.45661 0.90764 1.24853 0.96743 0.96878 0.94517 1.69901 1.05347 1.31684 1.46720 0.86857 0.79103 0.85119 0.78644 1.19938 1.19115 1.21102 1.20410 0.89128 0.78111 0.82667 1.90631 1.55667 1.55609 1.39527 1.21819 0.95535 1.01806 0.98513 1.20925 0.94269 0.98124 0.95395 0.90342 1.20667 1.02149 0.95768 0.94662 1.22174 0.96677 0.99320 0.97273 1.21943 0.96167 1.01010 1.00306 1.20380 0.97265 0.98535 0.96094 1.21678 0.96396 1.01128 0.96103 0.88562 0.88720 0.87302 0.90721 0.88895 0.95408 0.94606 0.92596 0.89539 0.89456 0.88511 0.91372 0.88305 0.88556 0.91565 0.91262 0.91859 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.09 13.86 29.01 0.40 -1.68 16 2 C -0.16 -2.09 9.74 -36.03 -0.35 -2.44 16 3 C 0.14 2.10 5.65 -5.19 -0.03 2.07 16 4 N -0.59 -11.98 2.44 -176.43 -0.43 -12.41 16 5 C 0.22 5.23 4.23 -5.19 -0.02 5.21 16 6 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 7 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 10 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 11 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.51 10.15 7.43 -10.99 -0.08 10.07 16 15 O -0.54 -12.83 13.67 5.56 0.08 -12.76 16 16 C -0.14 -1.97 3.73 -27.88 -0.10 -2.07 16 17 C -0.07 -0.96 1.87 -90.40 -0.17 -1.13 16 18 H 0.08 1.24 7.93 -51.93 -0.41 0.82 16 19 C -0.10 -1.47 5.05 -28.17 -0.14 -1.62 16 20 C -0.14 -1.85 9.80 -35.90 -0.35 -2.20 16 21 C -0.18 -2.09 9.80 -35.90 -0.35 -2.45 16 22 C -0.09 -0.90 6.12 -28.18 -0.17 -1.07 16 23 C -0.12 -1.26 5.31 -26.51 -0.14 -1.40 16 24 H 0.10 0.89 7.84 -52.49 -0.41 0.48 16 25 H 0.09 0.88 8.06 -52.49 -0.42 0.46 16 26 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 27 H 0.07 0.98 6.09 -51.93 -0.32 0.67 16 28 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 29 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 30 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.09 1.13 7.35 -51.93 -0.38 0.75 16 33 H 0.09 1.08 7.53 -51.93 -0.39 0.69 16 34 H 0.10 1.83 6.30 -51.93 -0.33 1.50 16 35 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 36 H 0.10 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -32.54 330.61 -8.00 -40.53 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.78 Total: 1.71 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.95 Total: -12.10 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.34 Total: -39.33 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.54 -8.00 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820223337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.893 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds