Wall clock time and date at job start Mon Mar 30 2020 07:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50694 * 120.00103 * 2 1 4 4 N 1.46503 * 109.47183 * 124.99672 * 3 2 1 5 5 C 1.46500 * 119.99822 * 90.00117 * 4 3 2 6 6 C 1.50706 * 109.46953 * 89.99511 * 5 4 3 7 7 H 1.07999 * 120.00193 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99398 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99350 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00608 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47326 * 270.00340 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00090 * 10 8 6 13 13 H 1.48498 * 109.47210 * 149.99801 * 10 8 6 14 14 C 1.34777 * 120.00054 * 269.99794 * 4 3 2 15 15 O 1.21275 * 119.99803 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00130 * 0.02562 * 14 4 3 17 17 C 1.52998 * 109.47238 * 179.97438 * 16 14 4 18 18 H 1.09000 * 109.63991 * 305.42101 * 17 16 14 19 19 C 1.53024 * 109.64105 * 66.05440 * 17 16 14 20 20 C 1.50071 * 110.14615 * 169.11954 * 19 17 16 21 21 C 1.29435 * 124.07802 * 342.87236 * 20 19 17 22 22 C 1.50068 * 124.07458 * 0.46716 * 21 20 19 23 23 C 1.53025 * 110.14984 * 342.86760 * 22 21 20 24 24 H 1.07999 * 119.99886 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.99726 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99560 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47133 * 4.99913 * 3 2 1 28 28 H 1.09002 * 109.47344 * 245.00245 * 3 2 1 29 29 H 1.09000 * 109.47175 * 329.99940 * 5 4 3 30 30 H 1.08993 * 109.47452 * 209.99730 * 5 4 3 31 31 H 0.97005 * 119.99661 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.47151 * 299.99768 * 16 14 4 33 33 H 1.08998 * 109.47139 * 59.99459 * 16 14 4 34 34 H 1.08994 * 109.36045 * 289.33256 * 19 17 16 35 35 H 1.09002 * 109.35863 * 48.91414 * 19 17 16 36 36 H 1.08002 * 117.95555 * 162.89527 * 20 19 17 37 37 H 1.08000 * 117.96597 * 180.48804 * 21 20 19 38 38 H 1.09002 * 109.36086 * 222.66236 * 22 21 20 39 39 H 1.08999 * 109.24692 * 103.00475 * 22 21 20 40 40 H 1.08999 * 109.64575 * 289.75369 * 23 22 21 41 41 H 1.08996 * 109.82205 * 169.22287 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3590 0.8256 0.9695 6 6 5.2616 1.9480 0.5259 7 1 4.8588 2.9393 0.3797 8 6 6.6020 1.7093 0.3077 9 7 7.3897 2.6889 -0.0789 10 14 7.2990 -0.0051 0.5613 11 1 7.7563 -0.1506 1.9665 12 1 6.2473 -1.0140 0.2760 13 1 8.4471 -0.2135 -0.3571 14 6 2.5937 1.8223 2.3214 15 8 3.3639 1.8449 3.2579 16 6 1.1892 2.3426 2.4881 17 6 0.9954 2.8367 3.9231 18 1 1.2548 2.0419 4.6224 19 6 1.8847 4.0570 4.1715 20 6 1.5156 4.7095 5.4715 21 6 0.4020 4.5008 6.0973 22 6 -0.6715 3.5694 5.6154 23 6 -0.4666 3.2511 4.1327 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4026 -0.9314 29 1 4.3667 0.0350 0.2192 30 1 4.7142 0.4278 1.9201 31 1 8.3328 2.5211 -0.2321 32 1 1.0221 3.1664 1.7941 33 1 0.4784 1.5428 2.2804 34 1 2.9277 3.7425 4.2083 35 1 1.7534 4.7712 3.3586 36 1 2.2232 5.3963 5.9121 37 1 0.2348 5.0301 7.0237 38 1 -1.6456 4.0389 5.7528 39 1 -0.6311 2.6455 6.1922 40 1 -0.6862 4.1352 3.5343 41 1 -1.1249 2.4348 3.8355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820223337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:34 Heat of formation + Delta-G solvation = -33.943983 kcal Electronic energy + Delta-G solvation = -20199.623412 eV Core-core repulsion = 17271.903863 eV Total energy + Delta-G solvation = -2927.719550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06536 -39.16297 -37.18411 -35.15576 -33.80283 -33.57909 -31.57486 -30.45461 -28.16061 -26.79809 -24.57806 -23.84101 -22.03062 -21.05560 -19.70282 -19.09289 -18.83434 -17.90017 -17.20040 -16.73540 -16.50019 -15.85171 -15.51870 -15.26767 -14.81519 -14.57943 -14.38535 -14.09431 -13.86077 -13.69297 -13.57094 -13.27342 -13.13573 -12.87044 -12.71614 -12.39320 -12.32391 -12.21846 -11.96424 -11.75215 -11.58256 -11.40978 -10.98894 -10.84644 -10.54833 -10.22898 -9.82272 -9.39465 -8.35423 -6.39894 1.29588 1.34171 1.36810 1.42907 1.44098 1.86964 2.29150 2.46983 2.99065 3.70190 3.77286 3.86359 4.05757 4.12346 4.18258 4.29508 4.44010 4.50290 4.57619 4.58532 4.73205 4.74823 4.77992 4.83280 4.87504 4.94155 5.02053 5.08600 5.13524 5.16794 5.26956 5.42554 5.45954 5.54300 5.63956 5.77583 5.81672 5.86245 6.11370 6.23777 6.61229 6.75570 7.21367 7.48705 8.81623 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018820 B = 0.005769 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.399135 B = 4852.709214 C = 5905.150568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.189 4.189 3 C 0.133 3.867 4 N -0.600 5.600 5 C 0.225 3.775 6 C -0.533 4.533 7 H 0.029 0.971 8 C 0.011 3.989 9 N -0.945 5.945 10 Si 0.947 3.053 11 H -0.277 1.277 12 H -0.240 1.240 13 H -0.273 1.273 14 C 0.496 3.504 15 O -0.589 6.589 16 C -0.122 4.122 17 C -0.066 4.066 18 H 0.057 0.943 19 C -0.093 4.093 20 C -0.169 4.169 21 C -0.156 4.156 22 C -0.090 4.090 23 C -0.108 4.108 24 H 0.118 0.882 25 H 0.115 0.885 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.015 0.985 31 H 0.268 0.732 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.436 -2.707 4.789 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.209 4.209 3 C 0.011 3.989 4 N -0.330 5.330 5 C 0.103 3.897 6 C -0.572 4.572 7 H 0.047 0.953 8 C -0.186 4.186 9 N -0.586 5.586 10 Si 0.769 3.231 11 H -0.203 1.203 12 H -0.163 1.163 13 H -0.199 1.199 14 C 0.286 3.714 15 O -0.470 6.470 16 C -0.162 4.162 17 C -0.085 4.085 18 H 0.075 0.925 19 C -0.131 4.131 20 C -0.188 4.188 21 C -0.174 4.174 22 C -0.127 4.127 23 C -0.145 4.145 24 H 0.137 0.863 25 H 0.133 0.867 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.133 0.867 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.850 -2.649 5.201 21.651 hybrid contribution 1.655 -0.200 -0.026 1.667 sum -19.194 -2.848 5.175 20.083 Atomic orbital electron populations 1.24087 0.94465 1.03621 0.97409 1.23227 0.97037 0.97874 1.02727 1.20820 0.91918 0.96970 0.89206 1.48045 1.12661 1.61129 1.11210 1.19265 0.80336 0.94035 0.96088 1.21561 0.94071 0.96062 1.45489 0.95283 1.25832 0.97092 1.01670 0.94051 1.70051 1.05907 1.34397 1.48209 0.85733 0.79080 0.79921 0.78329 1.20311 1.16311 1.19852 1.21502 0.91089 0.77059 0.81723 1.90609 1.57643 1.57465 1.41285 1.21836 0.91930 1.03070 0.99317 1.20906 0.96485 0.96554 0.94559 0.92486 1.20533 0.99835 0.96705 0.95980 1.22094 0.98152 1.01078 0.97440 1.22291 0.95419 0.99730 0.99997 1.20516 0.97821 0.98602 0.95771 1.21661 0.93722 1.02384 0.96721 0.86350 0.86711 0.88388 0.87987 0.90635 0.93746 0.96646 0.92294 0.87673 0.86206 0.93466 0.91643 0.88689 0.86705 0.88752 0.90594 0.90980 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 13.86 67.77 0.94 -1.67 16 2 C -0.19 -4.53 9.74 25.64 0.25 -4.28 16 3 C 0.13 4.00 5.65 85.63 0.48 4.48 16 4 N -0.60 -24.67 2.44 -830.51 -2.03 -26.70 16 5 C 0.23 11.26 4.23 85.63 0.36 11.62 16 6 C -0.53 -31.99 9.94 25.60 0.25 -31.74 16 7 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 8 C 0.01 0.69 5.47 84.66 0.46 1.15 16 9 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 10 Si 0.95 45.48 27.47 68.60 1.88 47.37 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 C 0.50 20.19 7.43 87.66 0.65 20.84 16 15 O -0.59 -29.83 13.67 -3.02 -0.04 -29.88 16 16 C -0.12 -3.30 3.73 29.85 0.11 -3.19 16 17 C -0.07 -1.79 1.87 -10.65 -0.02 -1.81 16 18 H 0.06 1.79 7.93 -2.39 -0.02 1.77 16 19 C -0.09 -3.00 5.05 29.66 0.15 -2.85 16 20 C -0.17 -4.64 9.80 27.05 0.27 -4.38 16 21 C -0.16 -3.40 9.80 27.05 0.27 -3.13 16 22 C -0.09 -1.55 6.12 29.66 0.18 -1.37 16 23 C -0.11 -1.94 5.31 30.74 0.16 -1.78 16 24 H 0.12 1.47 7.84 -2.91 -0.02 1.44 16 25 H 0.11 1.51 8.06 -2.91 -0.02 1.49 16 26 H 0.10 2.55 8.06 -2.91 -0.02 2.52 16 27 H 0.10 2.43 6.09 -2.39 -0.01 2.42 16 28 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 29 H 0.04 2.06 7.13 -2.39 -0.02 2.04 16 30 H 0.02 0.83 6.85 -2.39 -0.02 0.82 16 31 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 32 H 0.11 2.49 7.35 -2.38 -0.02 2.47 16 33 H 0.12 2.47 7.53 -2.39 -0.02 2.45 16 34 H 0.05 1.96 6.30 -2.39 -0.02 1.95 16 35 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 36 H 0.09 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.12 2.07 8.06 -2.91 -0.02 2.04 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -77.23 330.61 5.56 -71.67 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.92 Total: 16.06 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 4.52 Total: -18.10 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -1.73 Total: -87.12 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.04 Total: -29.88 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.37 kcal Total: -77.23 5.56 -71.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820223337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.725 kcal (2) G-P(sol) polarization free energy of solvation -77.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds