Wall clock time and date at job start Mon Mar 30 2020 06:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46806 * 2 1 4 4 H 1.09003 * 109.47371 * 305.00496 * 3 2 1 5 5 N 1.46903 * 109.46967 * 65.00417 * 3 2 1 6 6 C 1.50703 * 109.47225 * 185.00203 * 3 2 1 7 7 C 1.38269 * 119.94372 * 280.28011 * 6 3 2 8 8 C 1.38144 * 120.05356 * 180.23274 * 7 6 3 9 9 C 1.38738 * 119.94321 * 359.46563 * 8 7 6 10 10 O 1.35895 * 120.05328 * 180.25733 * 9 8 7 11 11 C 1.42908 * 117.00300 * 5.44139 * 10 9 8 12 12 H 1.08999 * 109.46763 * 35.07942 * 11 10 9 13 13 C 1.52998 * 109.46861 * 275.08196 * 11 10 9 14 14 C 1.53000 * 109.47302 * 155.08073 * 11 10 9 15 15 C 1.50701 * 109.47147 * 295.00341 * 14 11 10 16 16 H 1.08001 * 119.99726 * 359.97438 * 15 14 11 17 17 C 1.37870 * 120.00054 * 180.02562 * 15 14 11 18 18 N 1.31519 * 119.99959 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46862 * 90.00026 * 19 17 15 21 21 H 1.48502 * 109.47068 * 209.99932 * 19 17 15 22 22 H 1.48501 * 109.46830 * 329.99524 * 19 17 15 23 23 C 1.38728 * 119.88658 * 0.27687 * 9 8 7 24 24 C 1.38145 * 119.94787 * 0.02562 * 23 9 8 25 25 H 1.09002 * 109.46921 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47055 * 299.99693 * 1 2 3 27 27 H 1.08993 * 109.47723 * 59.99653 * 1 2 3 28 28 H 1.09000 * 109.46693 * 240.00677 * 2 1 3 29 29 H 1.08993 * 109.47723 * 120.00347 * 2 1 3 30 30 H 1.00903 * 110.99584 * 296.04197 * 5 3 2 31 31 H 1.00896 * 110.99818 * 59.99811 * 5 3 2 32 32 H 1.08000 * 119.97116 * 359.97438 * 7 6 3 33 33 H 1.08003 * 120.02845 * 179.74277 * 8 7 6 34 34 H 1.08997 * 109.47005 * 179.97438 * 13 11 10 35 35 H 1.09007 * 109.47464 * 300.00054 * 13 11 10 36 36 H 1.09001 * 109.47388 * 60.00137 * 13 11 10 37 37 H 1.08999 * 109.46786 * 54.99861 * 14 11 10 38 38 H 1.08998 * 109.47030 * 174.99502 * 14 11 10 39 39 H 0.96995 * 119.99959 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.02567 * 180.02562 * 23 9 8 41 41 H 1.07996 * 119.97196 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 7 1.6513 2.0993 1.2553 6 6 3.5418 1.4445 -0.1239 7 6 4.3264 1.1974 0.9876 8 6 5.7034 1.2033 0.8776 9 6 6.2989 1.4465 -0.3516 10 8 7.6532 1.4478 -0.4634 11 6 8.4003 1.0740 0.6961 12 1 7.8598 0.3015 1.2431 13 6 8.5916 2.2968 1.5955 14 6 9.7675 0.5353 0.2701 15 6 9.5836 -0.7387 -0.5135 16 1 8.5908 -1.1257 -0.6897 17 6 10.6827 -1.4108 -1.0046 18 7 11.8917 -0.9397 -0.7896 19 14 10.4548 -2.9904 -1.9753 20 1 10.3170 -2.6689 -3.4185 21 1 11.6347 -3.8695 -1.7744 22 1 9.2316 -3.6885 -1.5045 23 6 5.5094 1.6889 -1.4663 24 6 4.1329 1.6881 -1.3499 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 0.6475 2.1683 1.3315 31 1 2.0422 1.6179 2.0512 32 1 3.8622 1.0037 1.9433 33 1 6.3158 1.0144 1.7469 34 1 9.1610 2.0116 2.4801 35 1 9.1320 3.0694 1.0484 36 1 7.6175 2.6805 1.8990 37 1 10.2716 1.2749 -0.3520 38 1 10.3705 0.3337 1.1555 39 1 12.6649 -1.4123 -1.1354 40 1 5.9706 1.8781 -2.4244 41 1 3.5179 1.8763 -2.2174 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:27 Heat of formation + Delta-G solvation = -55.034832 kcal Electronic energy + Delta-G solvation = -19600.916542 eV Core-core repulsion = 16672.282424 eV Total energy + Delta-G solvation = -2928.634118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20221 -39.35374 -36.92250 -35.37994 -33.45846 -31.97916 -31.65955 -30.42985 -29.38346 -26.21145 -25.23485 -24.14268 -23.18987 -21.56391 -21.08572 -19.19623 -18.54256 -17.54315 -16.73242 -16.43982 -16.08238 -15.79593 -15.73999 -15.24355 -15.10294 -14.79082 -14.24679 -14.14783 -13.87140 -13.72773 -13.48657 -13.34724 -13.28371 -12.90478 -12.70209 -12.62433 -12.39060 -12.31203 -11.89195 -11.82206 -11.69688 -11.61677 -11.27418 -11.04554 -10.60706 -9.87743 -9.60032 -8.86095 -8.22904 -6.32209 0.46453 0.55630 1.36559 1.38303 1.48985 2.38621 2.49853 2.86384 3.11562 3.69016 3.88090 3.91813 4.00223 4.07898 4.15591 4.20935 4.23163 4.40917 4.47887 4.53204 4.58665 4.66545 4.78658 4.84976 4.88186 4.99918 5.12250 5.14893 5.16614 5.22114 5.34461 5.36065 5.38961 5.50144 5.55713 5.71347 5.74426 5.98674 6.17377 6.29762 6.66437 6.73169 6.80117 7.35349 8.88949 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023354 B = 0.004349 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.650473 B = 6437.177106 C = 7156.777824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.153 4.153 3 C 0.146 3.854 4 H 0.092 0.908 5 N -0.846 5.846 6 C -0.122 4.122 7 C -0.067 4.067 8 C -0.221 4.221 9 C 0.111 3.889 10 O -0.324 6.324 11 C 0.095 3.905 12 H 0.064 0.936 13 C -0.167 4.167 14 C 0.028 3.972 15 C -0.532 4.532 16 H 0.049 0.951 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.960 3.040 20 H -0.275 1.275 21 H -0.276 1.276 22 H -0.267 1.267 23 C -0.176 4.176 24 C -0.074 4.074 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.352 0.648 31 H 0.343 0.657 32 H 0.140 0.860 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.069 0.931 37 H -0.002 1.002 38 H 0.026 0.974 39 H 0.265 0.735 40 H 0.124 0.876 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.608 4.019 3.881 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C 0.034 3.966 4 H 0.110 0.890 5 N -0.378 5.378 6 C -0.123 4.123 7 C -0.085 4.085 8 C -0.240 4.240 9 C 0.065 3.935 10 O -0.238 6.238 11 C 0.040 3.960 12 H 0.082 0.918 13 C -0.224 4.224 14 C -0.009 4.009 15 C -0.570 4.570 16 H 0.068 0.932 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.785 3.215 20 H -0.201 1.201 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.195 4.195 24 C -0.092 4.092 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.016 0.984 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.142 0.858 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.915 4.677 3.426 22.669 hybrid contribution 0.324 -1.729 -0.204 1.771 sum -21.591 2.948 3.223 22.029 Atomic orbital electron populations 1.21780 0.94187 1.02311 1.02473 1.22324 0.97177 0.97375 1.02427 1.20185 0.89295 0.92939 0.94152 0.88961 1.58917 1.16981 1.58227 1.03646 1.19859 0.96039 1.03244 0.93173 1.20855 0.91727 0.96807 0.99138 1.21439 0.96878 1.08854 0.96791 1.19559 0.83198 0.95638 0.95071 1.86176 1.15164 1.82588 1.39891 1.22551 0.92733 0.96025 0.84723 0.91841 1.22304 1.02674 0.97645 0.99759 1.19118 0.90663 0.94905 0.96176 1.21443 0.92620 1.08554 1.34381 0.93249 1.25864 0.94850 1.01388 0.97299 1.70064 0.98574 1.41308 1.47153 0.85516 0.77992 0.79075 0.78910 1.20075 1.20135 1.19094 1.20615 0.93950 1.07683 0.97256 1.20998 0.92640 0.97376 0.98210 0.92362 0.91816 0.91993 0.92169 0.92269 0.83318 0.84311 0.84219 0.85240 0.89994 0.92577 0.91162 0.98400 0.95630 0.92623 0.85839 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.68 71.98 0.70 -0.96 16 2 C -0.15 -2.34 5.55 30.59 0.17 -2.17 16 3 C 0.15 2.48 3.04 44.17 0.13 2.62 16 4 H 0.09 1.47 8.00 -2.39 -0.02 1.45 16 5 N -0.85 -12.59 9.01 -171.78 -1.55 -14.14 16 6 C -0.12 -2.93 4.96 -19.85 -0.10 -3.03 16 7 C -0.07 -1.74 9.29 22.25 0.21 -1.53 16 8 C -0.22 -7.15 8.24 22.37 0.18 -6.97 16 9 C 0.11 4.23 6.60 22.51 0.15 4.37 16 10 O -0.32 -14.70 9.55 -92.37 -0.88 -15.58 16 11 C 0.10 4.15 2.17 30.59 0.07 4.21 16 12 H 0.06 2.68 6.31 -2.39 -0.02 2.67 16 13 C -0.17 -5.81 9.17 71.98 0.66 -5.15 16 14 C 0.03 1.53 4.68 29.85 0.14 1.67 16 15 C -0.53 -31.31 8.88 25.60 0.23 -31.08 16 16 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 17 C 0.00 0.23 5.46 84.65 0.46 0.69 16 18 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 19 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 C -0.18 -5.89 9.99 22.36 0.22 -5.66 16 24 C -0.07 -1.93 9.66 22.25 0.22 -1.72 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.55 6.87 -2.39 -0.02 0.54 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.35 3.77 7.55 -89.69 -0.68 3.09 16 31 H 0.34 4.68 7.35 -89.70 -0.66 4.03 16 32 H 0.14 2.82 6.67 -2.91 -0.02 2.80 16 33 H 0.13 4.05 5.43 -2.91 -0.02 4.04 16 34 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.07 2.14 6.91 -2.39 -0.02 2.13 16 37 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 41 H 0.15 2.95 8.03 -2.91 -0.02 2.93 16 Total: -1.00 -68.10 332.44 3.00 -65.09 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.31 Total: 18.56 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 3.44 Total: -44.71 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -1.26 Total: -70.97 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.88 Total: -15.58 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -68.10 3.00 -65.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.059 kcal (2) G-P(sol) polarization free energy of solvation -68.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds