Wall clock time and date at job start Mon Mar 30 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 H 1.08997 * 109.47318 * 305.00534 * 3 2 1 5 5 N 1.46901 * 109.46867 * 65.00476 * 3 2 1 6 6 C 1.50703 * 109.46706 * 185.00131 * 3 2 1 7 7 C 1.38263 * 119.94374 * 279.72390 * 6 3 2 8 8 C 1.38146 * 120.05383 * 179.72822 * 7 6 3 9 9 C 1.38733 * 119.94164 * 0.57381 * 8 7 6 10 10 O 1.35904 * 120.05578 * 179.68506 * 9 8 7 11 11 C 1.42900 * 116.99959 * 354.65017 * 10 9 8 12 12 H 1.08998 * 109.47509 * 324.77554 * 11 10 9 13 13 C 1.53007 * 109.46922 * 84.77404 * 11 10 9 14 14 C 1.52997 * 109.47313 * 204.77150 * 11 10 9 15 15 C 1.50701 * 109.47098 * 65.00410 * 14 11 10 16 16 H 1.08000 * 119.99571 * 359.97438 * 15 14 11 17 17 C 1.37877 * 120.00021 * 179.97438 * 15 14 11 18 18 N 1.31509 * 120.00202 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99618 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47078 * 90.00170 * 19 17 15 21 21 H 1.48505 * 109.47022 * 209.99863 * 19 17 15 22 22 H 1.48490 * 109.47467 * 329.99995 * 19 17 15 23 23 C 1.38729 * 119.89239 * 359.70485 * 9 8 7 24 24 C 1.38143 * 119.94272 * 359.97438 * 23 9 8 25 25 H 1.09003 * 109.46944 * 299.99691 * 1 2 3 26 26 H 1.09001 * 109.47529 * 59.99486 * 1 2 3 27 27 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46944 * 240.00309 * 2 1 3 29 29 H 1.09001 * 109.47529 * 120.00514 * 2 1 3 30 30 H 1.00897 * 110.99928 * 296.04407 * 5 3 2 31 31 H 1.00897 * 110.99923 * 59.99646 * 5 3 2 32 32 H 1.07991 * 119.97519 * 359.97438 * 7 6 3 33 33 H 1.07998 * 120.03074 * 180.25920 * 8 7 6 34 34 H 1.08998 * 109.46906 * 59.99781 * 13 11 10 35 35 H 1.09000 * 109.46970 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.47007 * 299.99964 * 13 11 10 37 37 H 1.08997 * 109.47043 * 185.00073 * 14 11 10 38 38 H 1.09000 * 109.47306 * 305.00569 * 14 11 10 39 39 H 0.96997 * 120.00005 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.03416 * 180.02562 * 23 9 8 41 41 H 1.08000 * 119.97430 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6514 2.0992 1.2553 6 6 3.5419 1.4442 -0.1239 7 6 4.3265 1.2084 0.9899 8 6 5.7034 1.2039 0.8778 9 6 6.2989 1.4480 -0.3512 10 8 7.6534 1.4505 -0.4628 11 6 8.4041 1.3115 0.7452 12 1 7.8850 1.8219 1.5564 13 6 8.5498 -0.1728 1.0872 14 6 9.7908 1.9301 0.5580 15 6 9.6534 3.4153 0.3428 16 1 8.6747 3.8722 0.3394 17 6 10.7769 4.1909 0.1501 18 7 11.9686 3.6347 0.1547 19 14 10.6064 6.0318 -0.1173 20 1 10.6536 6.7288 1.1930 21 1 11.7199 6.5127 -0.9742 22 1 9.3103 6.3173 -0.7834 23 6 5.5096 1.6901 -1.4660 24 6 4.1330 1.6869 -1.3501 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.6477 2.1683 1.3316 31 1 2.0423 1.6178 2.0512 32 1 3.8626 1.0237 1.9474 33 1 6.3158 1.0155 1.7472 34 1 9.0688 -0.6832 0.2760 35 1 9.1220 -0.2788 2.0088 36 1 7.5618 -0.6135 1.2206 37 1 10.3938 1.7461 1.4471 38 1 10.2751 1.4807 -0.3089 39 1 12.7590 4.1803 0.0188 40 1 5.9707 1.8800 -2.4240 41 1 3.5180 1.8749 -2.2177 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:35 Heat of formation + Delta-G solvation = -35.913332 kcal Electronic energy + Delta-G solvation = -19582.524713 eV Core-core repulsion = 16654.719766 eV Total energy + Delta-G solvation = -2927.804947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90144 -38.14526 -35.88060 -33.40075 -31.71100 -31.08668 -30.60347 -29.30981 -27.46003 -25.30219 -23.37703 -22.83127 -22.11778 -20.34341 -19.80283 -17.81375 -16.49200 -16.33405 -15.50359 -14.97608 -14.77156 -14.61221 -14.41915 -14.32302 -14.10501 -13.34073 -13.12419 -12.73575 -12.60614 -12.42398 -12.09073 -11.89993 -11.71410 -11.66814 -11.38228 -11.21241 -10.93317 -10.88925 -10.71313 -10.56332 -10.34558 -9.94066 -9.35910 -9.09318 -8.85776 -8.67972 -8.37210 -7.57899 -6.00165 -4.01369 1.65522 1.77023 3.34530 3.40572 3.46456 3.93917 4.07140 4.48237 4.49182 4.65446 4.78679 4.83389 5.08533 5.18402 5.30424 5.36863 5.38337 5.45963 5.58880 5.67092 5.68588 5.73768 5.76471 5.84488 5.93442 5.98407 6.06874 6.22837 6.31409 6.54353 6.58355 6.69458 6.81120 6.85174 7.03188 7.11172 7.29311 7.51637 7.61116 7.96691 8.19785 8.38684 9.02480 9.62090 11.11308 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.004110 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.932679 B = 6811.492441 C = 7319.069389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.156 4.156 3 C 0.140 3.860 4 H 0.084 0.916 5 N -0.840 5.840 6 C -0.132 4.132 7 C -0.066 4.066 8 C -0.214 4.214 9 C 0.151 3.849 10 O -0.291 6.291 11 C 0.086 3.914 12 H 0.062 0.938 13 C -0.177 4.177 14 C 0.025 3.975 15 C -0.513 4.513 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.161 4.161 24 C -0.075 4.075 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.338 0.662 31 H 0.339 0.661 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.038 0.962 38 H 0.029 0.971 39 H 0.261 0.739 40 H 0.128 0.872 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.933 -8.135 0.950 21.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.195 4.195 3 C 0.029 3.971 4 H 0.102 0.898 5 N -0.370 5.370 6 C -0.132 4.132 7 C -0.085 4.085 8 C -0.233 4.233 9 C 0.103 3.897 10 O -0.204 6.204 11 C 0.031 3.969 12 H 0.080 0.920 13 C -0.235 4.235 14 C -0.011 4.011 15 C -0.552 4.552 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.180 4.180 24 C -0.094 4.094 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.147 0.853 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.146 0.854 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.212 -7.433 0.486 20.605 hybrid contribution -0.425 0.067 0.330 0.542 sum -19.637 -7.366 0.816 20.989 Atomic orbital electron populations 1.21814 0.95886 1.01782 1.01677 1.22377 0.95736 0.98514 1.02923 1.20225 0.91683 0.91914 0.93281 0.89799 1.58937 1.15748 1.58387 1.03947 1.19409 0.94098 1.05901 0.93835 1.20531 0.92697 0.97796 0.97462 1.21336 0.95629 1.08783 0.97560 1.19240 0.84444 0.92457 0.93519 1.86278 1.13041 1.85738 1.35332 1.22859 0.95278 0.94215 0.84559 0.91981 1.22414 1.01259 0.97522 1.02265 1.19266 0.87624 0.95816 0.98433 1.21132 0.92844 0.92320 1.48860 0.92574 1.24977 0.95289 0.98718 0.95378 1.69948 0.97649 1.35689 1.50419 0.86578 0.77811 0.85465 0.78134 1.20672 1.21194 1.19763 1.20417 0.92708 1.06719 0.98107 1.20661 0.93640 0.98387 0.96706 0.92988 0.92492 0.92626 0.91211 0.91971 0.84836 0.84763 0.86876 0.85338 0.91947 0.91429 0.93324 0.94407 0.95310 0.92957 0.85417 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.68 37.16 0.36 -0.68 16 2 C -0.16 -1.33 5.56 -26.73 -0.15 -1.48 16 3 C 0.14 1.42 3.04 -68.86 -0.21 1.21 16 4 H 0.08 0.84 8.00 -51.93 -0.42 0.42 16 5 N -0.84 -7.99 9.00 -5.65 -0.05 -8.04 16 6 C -0.13 -1.73 4.96 -104.60 -0.52 -2.25 16 7 C -0.07 -0.93 9.29 -39.61 -0.37 -1.30 16 8 C -0.21 -3.53 8.24 -39.43 -0.32 -3.86 16 9 C 0.15 2.82 6.60 -39.22 -0.26 2.57 16 10 O -0.29 -6.36 9.55 -19.44 -0.19 -6.55 16 11 C 0.09 1.82 2.17 -26.73 -0.06 1.77 16 12 H 0.06 1.29 6.32 -51.93 -0.33 0.96 16 13 C -0.18 -3.05 9.17 37.16 0.34 -2.71 16 14 C 0.03 0.66 4.68 -27.88 -0.13 0.53 16 15 C -0.51 -14.74 8.88 -34.44 -0.31 -15.05 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 19 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 23 C -0.16 -2.68 9.99 -39.43 -0.39 -3.07 16 24 C -0.08 -1.05 9.66 -39.60 -0.38 -1.43 16 25 H 0.05 0.31 6.87 -51.93 -0.36 -0.05 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.34 2.53 7.55 -39.29 -0.30 2.23 16 31 H 0.34 2.98 7.33 -39.29 -0.29 2.69 16 32 H 0.11 1.31 6.65 -52.49 -0.35 0.96 16 33 H 0.13 2.04 5.43 -52.49 -0.28 1.76 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.74 6.90 -51.93 -0.36 0.38 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 41 H 0.12 1.35 8.03 -52.49 -0.42 0.93 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -31.18 332.39 -8.45 -39.63 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.44 Total: 3.28 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -2.50 Total: -24.19 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.69 Total: -34.33 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.19 Total: -6.55 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.18 -8.45 -39.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.720 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds