Wall clock time and date at job start Mon Mar 30 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 H 1.08997 * 109.47318 * 305.00534 * 3 2 1 5 5 N 1.46901 * 109.46867 * 65.00476 * 3 2 1 6 6 C 1.50703 * 109.46706 * 185.00131 * 3 2 1 7 7 C 1.38263 * 119.94374 * 279.72390 * 6 3 2 8 8 C 1.38146 * 120.05383 * 179.72822 * 7 6 3 9 9 C 1.38733 * 119.94164 * 0.57381 * 8 7 6 10 10 O 1.35904 * 120.05578 * 179.68506 * 9 8 7 11 11 C 1.42900 * 116.99959 * 354.65017 * 10 9 8 12 12 H 1.08998 * 109.47509 * 324.77554 * 11 10 9 13 13 C 1.53007 * 109.46922 * 84.77404 * 11 10 9 14 14 C 1.52997 * 109.47313 * 204.77150 * 11 10 9 15 15 C 1.50701 * 109.47098 * 65.00410 * 14 11 10 16 16 H 1.08000 * 119.99571 * 359.97438 * 15 14 11 17 17 C 1.37877 * 120.00021 * 179.97438 * 15 14 11 18 18 N 1.31509 * 120.00202 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99618 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47078 * 90.00170 * 19 17 15 21 21 H 1.48505 * 109.47022 * 209.99863 * 19 17 15 22 22 H 1.48490 * 109.47467 * 329.99995 * 19 17 15 23 23 C 1.38729 * 119.89239 * 359.70485 * 9 8 7 24 24 C 1.38143 * 119.94272 * 359.97438 * 23 9 8 25 25 H 1.09003 * 109.46944 * 299.99691 * 1 2 3 26 26 H 1.09001 * 109.47529 * 59.99486 * 1 2 3 27 27 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46944 * 240.00309 * 2 1 3 29 29 H 1.09001 * 109.47529 * 120.00514 * 2 1 3 30 30 H 1.00897 * 110.99928 * 296.04407 * 5 3 2 31 31 H 1.00897 * 110.99923 * 59.99646 * 5 3 2 32 32 H 1.07991 * 119.97519 * 359.97438 * 7 6 3 33 33 H 1.07998 * 120.03074 * 180.25920 * 8 7 6 34 34 H 1.08998 * 109.46906 * 59.99781 * 13 11 10 35 35 H 1.09000 * 109.46970 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.47007 * 299.99964 * 13 11 10 37 37 H 1.08997 * 109.47043 * 185.00073 * 14 11 10 38 38 H 1.09000 * 109.47306 * 305.00569 * 14 11 10 39 39 H 0.96997 * 120.00005 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.03416 * 180.02562 * 23 9 8 41 41 H 1.08000 * 119.97430 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6514 2.0992 1.2553 6 6 3.5419 1.4442 -0.1239 7 6 4.3265 1.2084 0.9899 8 6 5.7034 1.2039 0.8778 9 6 6.2989 1.4480 -0.3512 10 8 7.6534 1.4505 -0.4628 11 6 8.4041 1.3115 0.7452 12 1 7.8850 1.8219 1.5564 13 6 8.5498 -0.1728 1.0872 14 6 9.7908 1.9301 0.5580 15 6 9.6534 3.4153 0.3428 16 1 8.6747 3.8722 0.3394 17 6 10.7769 4.1909 0.1501 18 7 11.9686 3.6347 0.1547 19 14 10.6064 6.0318 -0.1173 20 1 10.6536 6.7288 1.1930 21 1 11.7199 6.5127 -0.9742 22 1 9.3103 6.3173 -0.7834 23 6 5.5096 1.6901 -1.4660 24 6 4.1330 1.6869 -1.3501 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.6477 2.1683 1.3316 31 1 2.0423 1.6178 2.0512 32 1 3.8626 1.0237 1.9474 33 1 6.3158 1.0155 1.7472 34 1 9.0688 -0.6832 0.2760 35 1 9.1220 -0.2788 2.0088 36 1 7.5618 -0.6135 1.2206 37 1 10.3938 1.7461 1.4471 38 1 10.2751 1.4807 -0.3089 39 1 12.7590 4.1803 0.0188 40 1 5.9707 1.8800 -2.4240 41 1 3.5180 1.8749 -2.2177 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:35 Heat of formation + Delta-G solvation = -54.967500 kcal Electronic energy + Delta-G solvation = -19583.350964 eV Core-core repulsion = 16654.719766 eV Total energy + Delta-G solvation = -2928.631198 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20251 -39.35361 -36.92183 -35.37969 -33.45818 -31.98202 -31.65561 -30.43266 -29.38347 -26.21364 -25.23253 -24.14181 -23.18217 -21.56726 -21.08103 -19.19638 -18.54295 -17.54244 -16.73223 -16.43628 -16.12778 -15.77386 -15.71029 -15.26424 -15.09366 -14.75782 -14.31615 -14.17920 -13.82707 -13.60784 -13.50109 -13.40189 -13.21575 -13.02697 -12.67421 -12.65468 -12.38342 -12.25315 -11.85732 -11.80073 -11.79004 -11.57915 -11.26318 -11.05061 -10.60365 -9.87820 -9.59386 -8.86036 -8.22941 -6.32085 0.46338 0.55549 1.36872 1.38345 1.50012 2.39015 2.49556 2.86630 3.11519 3.69218 3.87312 3.92104 4.00705 4.07725 4.16889 4.21930 4.22606 4.40913 4.48099 4.53640 4.58825 4.67186 4.79081 4.85017 4.89305 4.99784 5.12449 5.15074 5.16429 5.22722 5.34740 5.36347 5.39392 5.50229 5.55704 5.71396 5.74511 5.98678 6.17586 6.30820 6.66500 6.73230 6.80224 7.35518 8.88850 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.004110 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.932679 B = 6811.492441 C = 7319.069389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 C 0.145 3.855 4 H 0.090 0.910 5 N -0.849 5.849 6 C -0.122 4.122 7 C -0.067 4.067 8 C -0.221 4.221 9 C 0.111 3.889 10 O -0.324 6.324 11 C 0.095 3.905 12 H 0.063 0.937 13 C -0.166 4.166 14 C 0.028 3.972 15 C -0.532 4.532 16 H 0.048 0.952 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.272 1.272 23 C -0.177 4.177 24 C -0.074 4.074 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.352 0.648 31 H 0.343 0.657 32 H 0.140 0.860 33 H 0.130 0.870 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.026 0.974 38 H -0.002 1.002 39 H 0.265 0.735 40 H 0.123 0.877 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.760 -7.836 1.475 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.190 4.190 3 C 0.033 3.967 4 H 0.108 0.892 5 N -0.381 5.381 6 C -0.123 4.123 7 C -0.085 4.085 8 C -0.240 4.240 9 C 0.065 3.935 10 O -0.238 6.238 11 C 0.039 3.961 12 H 0.081 0.919 13 C -0.223 4.223 14 C -0.009 4.009 15 C -0.570 4.570 16 H 0.067 0.933 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.195 4.195 24 C -0.092 4.092 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.016 0.984 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.066 -7.143 1.020 23.216 hybrid contribution 0.333 -0.043 0.148 0.367 sum -21.733 -7.186 1.168 22.920 Atomic orbital electron populations 1.21789 0.94340 1.02360 1.02359 1.22299 0.97023 0.97064 1.02610 1.20199 0.89304 0.93203 0.93984 0.89182 1.58899 1.16992 1.58451 1.03763 1.19862 0.96048 1.03281 0.93128 1.20852 0.91722 0.96863 0.99059 1.21440 0.96867 1.08954 0.96694 1.19561 0.83192 0.95403 0.95317 1.86178 1.15088 1.87124 1.35437 1.22552 0.92622 0.96259 0.84642 0.91905 1.22302 1.02743 0.94708 1.02578 1.19117 0.90490 0.94872 0.96378 1.21444 0.92623 0.93951 1.49003 0.93342 1.25859 0.94909 1.03659 0.94966 1.70058 0.98387 1.37544 1.51089 0.85520 0.77828 0.79613 0.78570 1.19315 1.20344 1.19631 1.20616 0.93965 1.07356 0.97590 1.21000 0.92630 0.97320 0.98279 0.92026 0.92121 0.92149 0.91821 0.92060 0.83317 0.84265 0.84195 0.85221 0.92540 0.90010 0.91085 0.95622 0.98350 0.92613 0.85871 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.68 71.98 0.70 -0.85 16 2 C -0.15 -2.10 5.56 30.59 0.17 -1.93 16 3 C 0.14 2.47 3.04 44.17 0.13 2.60 16 4 H 0.09 1.48 8.00 -2.39 -0.02 1.46 16 5 N -0.85 -13.35 9.00 -171.80 -1.55 -14.90 16 6 C -0.12 -2.93 4.96 -19.85 -0.10 -3.03 16 7 C -0.07 -1.73 9.29 22.25 0.21 -1.52 16 8 C -0.22 -7.15 8.24 22.37 0.18 -6.96 16 9 C 0.11 4.23 6.60 22.51 0.15 4.38 16 10 O -0.32 -14.72 9.55 -92.47 -0.88 -15.61 16 11 C 0.09 4.13 2.17 30.60 0.07 4.20 16 12 H 0.06 2.67 6.32 -2.39 -0.02 2.65 16 13 C -0.17 -5.73 9.17 71.98 0.66 -5.07 16 14 C 0.03 1.53 4.68 29.85 0.14 1.67 16 15 C -0.53 -31.54 8.88 25.60 0.23 -31.31 16 16 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 17 C 0.00 0.23 5.46 84.66 0.46 0.69 16 18 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 19 Si 0.96 45.99 29.54 68.60 2.03 48.01 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 23 C -0.18 -5.91 9.99 22.36 0.22 -5.69 16 24 C -0.07 -1.94 9.66 22.26 0.22 -1.72 16 25 H 0.06 0.52 6.87 -2.39 -0.02 0.50 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.35 4.03 7.55 -89.70 -0.68 3.36 16 31 H 0.34 4.89 7.33 -89.70 -0.66 4.23 16 32 H 0.14 2.82 6.65 -2.92 -0.02 2.80 16 33 H 0.13 4.05 5.43 -2.91 -0.02 4.04 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.07 2.12 6.90 -2.39 -0.02 2.10 16 37 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.12 4.08 8.06 -2.91 -0.02 4.05 16 41 H 0.15 2.96 8.03 -2.91 -0.02 2.94 16 Total: -1.00 -68.67 332.39 3.01 -65.67 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -0.31 Total: 18.38 kcal Atomic # 6 Polarization: -47.99 SS G_CDS: 3.44 Total: -44.55 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -1.26 Total: -71.90 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.88 Total: -15.61 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -68.67 3.01 -65.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.698 kcal (2) G-P(sol) polarization free energy of solvation -68.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds