Wall clock time and date at job start Mon Mar 30 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46512 * 2 1 4 4 H 1.09001 * 109.46656 * 179.60735 * 3 2 1 5 5 C 1.50693 * 109.47220 * 299.60183 * 3 2 1 6 6 H 1.08004 * 119.99907 * 120.00436 * 5 3 2 7 7 C 1.37880 * 120.00436 * 300.00812 * 5 3 2 8 8 N 1.31513 * 119.99798 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99971 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47159 * 59.99725 * 9 7 5 11 11 H 1.48501 * 109.46882 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47077 * 299.99577 * 9 7 5 13 13 N 1.46896 * 109.47311 * 59.61057 * 3 2 1 14 14 C 1.46898 * 111.00364 * 86.25662 * 13 3 2 15 15 C 1.53002 * 109.47268 * 185.39272 * 14 13 3 16 16 H 1.08994 * 109.47246 * 59.99820 * 15 14 13 17 17 O 1.42906 * 109.46686 * 299.99498 * 15 14 13 18 18 C 1.50697 * 109.47095 * 180.02562 * 15 14 13 19 19 C 1.38258 * 120.00518 * 94.72317 * 18 15 14 20 20 C 1.38211 * 120.00236 * 179.81126 * 19 18 15 21 21 C 1.38250 * 119.99800 * 0.41436 * 20 19 18 22 22 C 1.38209 * 120.00309 * 359.81615 * 21 20 19 23 23 C 1.38216 * 119.99792 * 274.99806 * 18 15 14 24 24 C 1.50699 * 119.99897 * 359.97438 * 23 18 15 25 25 H 1.09003 * 109.46649 * 55.92310 * 1 2 3 26 26 H 1.09001 * 109.46661 * 175.91938 * 1 2 3 27 27 H 1.09000 * 109.47142 * 295.92132 * 1 2 3 28 28 H 1.08993 * 109.47221 * 239.99663 * 2 1 3 29 29 H 1.08996 * 109.46836 * 119.99236 * 2 1 3 30 30 H 0.97002 * 119.99522 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99629 * 210.21038 * 13 3 2 32 32 H 1.09001 * 109.47077 * 305.38812 * 14 13 3 33 33 H 1.09003 * 109.47372 * 65.38918 * 14 13 3 34 34 H 0.96700 * 113.99903 * 300.00085 * 17 15 14 35 35 H 1.08003 * 119.99555 * 359.97438 * 19 18 15 36 36 H 1.07999 * 119.99662 * 180.21133 * 20 19 18 37 37 H 1.08004 * 119.99926 * 179.79265 * 21 20 19 38 38 H 1.07998 * 120.00507 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47191 * 90.00193 * 24 23 18 40 40 H 1.08999 * 109.47161 * 210.00453 * 24 23 18 41 41 H 1.09008 * 109.47104 * 329.99949 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 0.0070 5 6 1.5456 2.1501 -1.2353 6 1 0.9240 3.0284 -1.1423 7 6 1.8868 1.6761 -2.4843 8 7 2.6440 0.6069 -2.5976 9 14 1.2734 2.5528 -4.0156 10 1 1.7678 3.9531 -4.0158 11 1 1.7768 1.8504 -5.2232 12 1 -0.2116 2.5522 -4.0250 13 7 1.5426 2.1378 1.1946 14 6 2.4349 1.9190 2.3409 15 6 1.8177 2.5431 3.5941 16 1 0.8513 2.0798 3.7924 17 8 1.6404 3.9462 3.3895 18 6 2.7334 2.3192 4.7698 19 6 3.6469 3.2925 5.1298 20 6 4.4841 3.0888 6.2105 21 6 4.4139 1.9081 6.9263 22 6 3.5040 0.9330 6.5635 23 6 2.6640 1.1384 5.4848 24 6 1.6722 0.0751 5.0889 25 1 -0.3633 0.5758 -0.8512 26 1 -0.3633 -1.0251 -0.0731 27 1 -0.3633 0.4492 0.9243 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 2.8837 0.2733 -3.4764 31 1 1.4198 3.1230 1.0148 32 1 2.5702 0.8487 2.4969 33 1 3.4014 2.3823 2.1425 34 1 2.4612 4.4240 3.2074 35 1 3.7045 4.2132 4.5682 36 1 5.1953 3.8506 6.4938 37 1 5.0704 1.7474 7.7687 38 1 3.4495 0.0105 7.1224 39 1 2.1324 -0.6009 4.3684 40 1 1.3698 -0.4868 5.9726 41 1 0.7967 0.5440 4.6395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846991153.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:12 Heat of formation + Delta-G solvation = -39.247071 kcal Electronic energy + Delta-G solvation = -20102.312978 eV Core-core repulsion = 17174.363469 eV Total energy + Delta-G solvation = -2927.949509 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.88263 -37.21691 -35.64795 -33.18114 -32.35252 -31.24521 -30.50764 -27.74695 -26.85249 -25.50549 -23.23402 -22.61751 -21.59709 -20.63153 -19.01028 -17.23595 -16.55856 -16.08775 -15.46543 -15.05903 -14.69071 -14.41119 -13.97285 -13.80856 -13.35493 -13.25744 -13.08987 -12.90487 -12.28334 -12.12902 -11.94134 -11.90188 -11.64008 -11.32061 -11.03881 -10.91791 -10.82298 -10.68951 -10.36156 -10.16903 -9.92816 -9.59385 -9.37221 -8.81849 -8.76828 -8.53972 -8.44791 -7.21554 -6.00994 -4.06481 1.32611 1.36300 3.31753 3.36336 3.39338 3.71751 4.40259 4.58859 4.67280 4.82034 4.89549 4.98321 5.24345 5.29835 5.31856 5.56462 5.57215 5.62173 5.71754 5.74731 5.88464 5.97805 6.15678 6.24568 6.29264 6.46805 6.47646 6.55443 6.68677 6.70162 6.86680 6.98566 7.23769 7.32052 7.50354 7.75546 7.77632 7.81384 7.86905 8.28869 8.40857 8.69629 9.03521 9.58364 11.04855 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030174 B = 0.004507 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.728020 B = 6211.733571 C = 6564.345600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.039 3.961 15 C 0.147 3.853 16 H 0.115 0.885 17 O -0.552 6.552 18 C -0.109 4.109 19 C -0.110 4.110 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.121 4.121 23 C -0.074 4.074 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.013 0.987 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.008 0.992 30 H 0.261 0.739 31 H 0.336 0.664 32 H 0.073 0.927 33 H 0.019 0.981 34 H 0.367 0.633 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 1.447 16.258 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.016 0.984 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.312 5.312 14 C -0.092 4.092 15 C 0.088 3.912 16 H 0.133 0.867 17 O -0.357 6.357 18 C -0.110 4.110 19 C -0.128 4.128 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.139 4.139 23 C -0.074 4.074 24 C -0.179 4.179 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.154 0.846 32 H 0.091 0.909 33 H 0.037 0.963 34 H 0.215 0.785 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.355 0.654 16.372 16.441 hybrid contribution 1.259 1.022 -1.147 1.986 sum 2.614 1.676 15.225 15.539 Atomic orbital electron populations 1.21449 0.97474 0.97351 1.01402 1.21435 0.95046 0.98281 0.99330 1.19118 0.92778 0.91481 0.85748 0.98445 1.21163 1.31627 1.11993 0.90334 0.92302 1.24885 0.95028 0.95004 0.98912 1.69878 1.36570 1.22712 1.23681 0.86633 0.79275 0.79620 0.82312 1.20394 1.21377 1.20173 1.60589 1.48116 1.16656 1.05804 1.22478 0.94043 1.00747 0.91890 1.21041 0.98208 0.81637 0.90314 0.86721 1.86636 1.36057 1.19505 1.93536 1.20578 0.97959 0.94418 0.98017 1.20877 0.95500 0.98926 0.97474 1.21054 0.99528 0.97648 0.96146 1.21088 0.98938 0.94143 0.99970 1.21013 0.96350 0.99236 0.97337 1.19753 0.97442 0.95081 0.95162 1.20919 0.97989 0.97071 1.01882 0.92510 0.96820 0.93929 0.89554 0.97343 0.92933 0.84591 0.90900 0.96291 0.78538 0.86168 0.86270 0.86343 0.86172 0.90573 0.91685 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.52 37.16 0.35 -2.33 16 2 C -0.10 -2.47 5.59 -26.73 -0.15 -2.62 16 3 C 0.22 5.35 2.30 -68.87 -0.16 5.19 16 4 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 5 C -0.51 -13.73 7.28 -34.44 -0.25 -13.98 16 6 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -14.17 5.57 -107.95 -0.60 -14.77 16 14 C 0.04 0.69 5.14 -3.82 -0.02 0.67 16 15 C 0.15 2.20 2.98 -27.88 -0.08 2.12 16 16 H 0.12 1.79 6.16 -51.93 -0.32 1.47 16 17 O -0.55 -8.26 12.43 -35.23 -0.44 -8.70 16 18 C -0.11 -1.48 5.06 -104.62 -0.53 -2.01 16 19 C -0.11 -1.35 9.30 -39.58 -0.37 -1.72 16 20 C -0.13 -1.39 10.05 -39.59 -0.40 -1.79 16 21 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 22 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 23 C -0.07 -0.95 5.88 -104.62 -0.62 -1.56 16 24 C -0.12 -1.41 9.38 36.01 0.34 -1.07 16 25 H 0.06 1.38 7.09 -51.93 -0.37 1.01 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.04 0.90 7.72 -51.93 -0.40 0.50 16 28 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 29 H 0.01 0.18 7.48 -51.93 -0.39 -0.21 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 31 H 0.34 7.08 7.73 -39.29 -0.30 6.77 16 32 H 0.07 1.33 7.20 -51.93 -0.37 0.95 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.37 4.39 7.32 45.56 0.33 4.72 16 35 H 0.12 1.28 6.41 -52.48 -0.34 0.94 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 41 H 0.07 0.90 6.03 -51.92 -0.31 0.59 16 LS Contribution 327.34 15.07 4.93 4.93 Total: -1.00 -29.03 327.34 -8.94 -37.97 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.68 Total: 9.88 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.76 Total: -20.95 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.03 Total: -39.27 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.44 Total: -8.70 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.03 -8.94 -37.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846991153.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.275 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds