Wall clock time and date at job start Mon Mar 30 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46512 * 2 1 4 4 H 1.09001 * 109.46656 * 179.60735 * 3 2 1 5 5 C 1.50693 * 109.47220 * 299.60183 * 3 2 1 6 6 H 1.08004 * 119.99907 * 120.00436 * 5 3 2 7 7 C 1.37880 * 120.00436 * 300.00812 * 5 3 2 8 8 N 1.31513 * 119.99798 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99971 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47159 * 59.99725 * 9 7 5 11 11 H 1.48501 * 109.46882 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47077 * 299.99577 * 9 7 5 13 13 N 1.46896 * 109.47311 * 59.61057 * 3 2 1 14 14 C 1.46898 * 111.00364 * 86.25662 * 13 3 2 15 15 C 1.53002 * 109.47268 * 185.39272 * 14 13 3 16 16 H 1.08994 * 109.47246 * 59.99820 * 15 14 13 17 17 O 1.42906 * 109.46686 * 299.99498 * 15 14 13 18 18 C 1.50697 * 109.47095 * 180.02562 * 15 14 13 19 19 C 1.38258 * 120.00518 * 94.72317 * 18 15 14 20 20 C 1.38211 * 120.00236 * 179.81126 * 19 18 15 21 21 C 1.38250 * 119.99800 * 0.41436 * 20 19 18 22 22 C 1.38209 * 120.00309 * 359.81615 * 21 20 19 23 23 C 1.38216 * 119.99792 * 274.99806 * 18 15 14 24 24 C 1.50699 * 119.99897 * 359.97438 * 23 18 15 25 25 H 1.09003 * 109.46649 * 55.92310 * 1 2 3 26 26 H 1.09001 * 109.46661 * 175.91938 * 1 2 3 27 27 H 1.09000 * 109.47142 * 295.92132 * 1 2 3 28 28 H 1.08993 * 109.47221 * 239.99663 * 2 1 3 29 29 H 1.08996 * 109.46836 * 119.99236 * 2 1 3 30 30 H 0.97002 * 119.99522 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99629 * 210.21038 * 13 3 2 32 32 H 1.09001 * 109.47077 * 305.38812 * 14 13 3 33 33 H 1.09003 * 109.47372 * 65.38918 * 14 13 3 34 34 H 0.96700 * 113.99903 * 300.00085 * 17 15 14 35 35 H 1.08003 * 119.99555 * 359.97438 * 19 18 15 36 36 H 1.07999 * 119.99662 * 180.21133 * 20 19 18 37 37 H 1.08004 * 119.99926 * 179.79265 * 21 20 19 38 38 H 1.07998 * 120.00507 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47191 * 90.00193 * 24 23 18 40 40 H 1.08999 * 109.47161 * 210.00453 * 24 23 18 41 41 H 1.09008 * 109.47104 * 329.99949 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 0.0070 5 6 1.5456 2.1501 -1.2353 6 1 0.9240 3.0284 -1.1423 7 6 1.8868 1.6761 -2.4843 8 7 2.6440 0.6069 -2.5976 9 14 1.2734 2.5528 -4.0156 10 1 1.7678 3.9531 -4.0158 11 1 1.7768 1.8504 -5.2232 12 1 -0.2116 2.5522 -4.0250 13 7 1.5426 2.1378 1.1946 14 6 2.4349 1.9190 2.3409 15 6 1.8177 2.5431 3.5941 16 1 0.8513 2.0798 3.7924 17 8 1.6404 3.9462 3.3895 18 6 2.7334 2.3192 4.7698 19 6 3.6469 3.2925 5.1298 20 6 4.4841 3.0888 6.2105 21 6 4.4139 1.9081 6.9263 22 6 3.5040 0.9330 6.5635 23 6 2.6640 1.1384 5.4848 24 6 1.6722 0.0751 5.0889 25 1 -0.3633 0.5758 -0.8512 26 1 -0.3633 -1.0251 -0.0731 27 1 -0.3633 0.4492 0.9243 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 2.8837 0.2733 -3.4764 31 1 1.4198 3.1230 1.0148 32 1 2.5702 0.8487 2.4969 33 1 3.4014 2.3823 2.1425 34 1 2.4612 4.4240 3.2074 35 1 3.7045 4.2132 4.5682 36 1 5.1953 3.8506 6.4938 37 1 5.0704 1.7474 7.7687 38 1 3.4495 0.0105 7.1224 39 1 2.1324 -0.6009 4.3684 40 1 1.3698 -0.4868 5.9726 41 1 0.7967 0.5440 4.6395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846991153.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:12 Heat of formation + Delta-G solvation = -57.429972 kcal Electronic energy + Delta-G solvation = -20103.101448 eV Core-core repulsion = 17174.363469 eV Total energy + Delta-G solvation = -2928.737979 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.87134 -38.55975 -37.28300 -34.48647 -33.85392 -32.60003 -31.97817 -29.25913 -27.91403 -27.12218 -25.10672 -23.95871 -22.57578 -21.65904 -20.92576 -18.55709 -18.18169 -17.24721 -16.91570 -16.51867 -15.97795 -15.76021 -15.31700 -15.14549 -14.75449 -14.71473 -14.47106 -13.96808 -13.86641 -13.59865 -13.18924 -13.02613 -12.91092 -12.80289 -12.67737 -12.58877 -12.41677 -11.99771 -11.91735 -11.82655 -11.62082 -11.34466 -10.97424 -10.77319 -10.52433 -9.70591 -9.48909 -8.99553 -8.09292 -6.21720 0.41045 0.48180 1.43120 1.44445 1.51713 2.42977 2.80874 3.19085 3.41069 3.52762 3.94032 3.98581 4.07149 4.13139 4.24587 4.30196 4.47911 4.57437 4.64474 4.76342 4.78522 4.79934 4.82997 4.93475 4.96345 4.98786 5.17299 5.30585 5.31733 5.39930 5.56178 5.57774 5.60929 5.71543 5.73878 5.82977 5.89604 6.12392 6.28815 6.49460 6.71903 6.81221 7.04314 7.47167 8.95491 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030174 B = 0.004507 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.728020 B = 6211.733571 C = 6564.345600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C 0.223 3.777 4 H -0.039 1.039 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.674 5.674 14 C 0.046 3.954 15 C 0.163 3.837 16 H 0.108 0.892 17 O -0.562 6.562 18 C -0.130 4.130 19 C -0.122 4.122 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.089 4.089 24 C -0.121 4.121 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.019 0.981 30 H 0.261 0.739 31 H 0.335 0.665 32 H 0.065 0.935 33 H 0.013 0.987 34 H 0.380 0.620 35 H 0.131 0.869 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 1.864 17.672 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.114 3.886 4 H -0.022 1.022 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.305 5.305 14 C -0.085 4.085 15 C 0.104 3.896 16 H 0.126 0.874 17 O -0.369 6.369 18 C -0.131 4.131 19 C -0.140 4.140 20 C -0.149 4.149 21 C -0.140 4.140 22 C -0.146 4.146 23 C -0.089 4.089 24 C -0.177 4.177 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.229 0.771 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.323 1.084 17.803 17.885 hybrid contribution 1.337 0.897 -1.498 2.199 sum 2.660 1.981 16.306 16.640 Atomic orbital electron populations 1.21305 0.95883 0.98363 1.00872 1.21313 0.96341 0.97622 0.98437 1.18913 0.90482 0.92275 0.86915 1.02189 1.21425 1.31492 1.12043 0.91385 0.92541 1.25619 0.95169 0.95630 1.01715 1.70014 1.37511 1.23888 1.24189 0.85669 0.78814 0.78668 0.78827 1.19768 1.21137 1.19697 1.60516 1.48593 1.16221 1.05191 1.22474 0.93437 1.00576 0.91970 1.20727 0.98025 0.81334 0.89512 0.87444 1.86597 1.37266 1.19500 1.93570 1.20489 0.98805 0.95681 0.98152 1.21125 0.95517 0.99149 0.98231 1.21399 0.99468 0.98512 0.95527 1.21494 0.98651 0.93571 1.00332 1.21328 0.95977 1.00360 0.96946 1.19975 0.98157 0.95022 0.95789 1.20912 0.97386 0.96871 1.02550 0.94670 0.94777 0.92893 0.92411 0.96198 0.93017 0.84730 0.91620 0.96916 0.77108 0.85132 0.83903 0.83573 0.84041 0.91329 0.89631 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.74 9.52 71.98 0.69 -4.06 16 2 C -0.10 -4.82 5.59 30.60 0.17 -4.65 16 3 C 0.22 11.26 2.30 44.17 0.10 11.36 16 4 H -0.04 -2.25 7.84 -2.39 -0.02 -2.27 16 5 C -0.53 -28.49 7.28 25.60 0.19 -28.31 16 6 H 0.06 3.03 7.60 -2.91 -0.02 3.01 16 7 C 0.02 0.98 5.30 84.66 0.45 1.43 16 8 N -0.92 -52.69 11.32 21.45 0.24 -52.44 16 9 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 N -0.67 -28.41 5.57 -495.46 -2.76 -31.16 16 14 C 0.05 1.63 5.14 86.30 0.44 2.07 16 15 C 0.16 4.86 2.98 29.85 0.09 4.95 16 16 H 0.11 3.35 6.16 -2.39 -0.01 3.33 16 17 O -0.56 -16.53 12.43 -148.98 -1.85 -18.39 16 18 C -0.13 -3.45 5.06 -19.87 -0.10 -3.55 16 19 C -0.12 -2.85 9.30 22.27 0.21 -2.64 16 20 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 21 C -0.12 -2.28 10.05 22.27 0.22 -2.05 16 22 C -0.13 -2.62 9.70 22.27 0.22 -2.40 16 23 C -0.09 -2.17 5.88 -19.87 -0.12 -2.29 16 24 C -0.12 -2.69 9.38 71.24 0.67 -2.02 16 25 H 0.03 1.69 7.09 -2.39 -0.02 1.67 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 2.21 7.72 -2.39 -0.02 2.19 16 28 H 0.06 3.18 6.06 -2.39 -0.01 3.16 16 29 H 0.02 0.89 7.48 -2.39 -0.02 0.87 16 30 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.33 14.21 7.73 -89.69 -0.69 13.52 16 32 H 0.07 2.43 7.20 -2.39 -0.02 2.41 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.38 8.84 7.32 -74.06 -0.54 8.30 16 35 H 0.13 2.61 6.41 -2.91 -0.02 2.60 16 36 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 41 H 0.07 1.56 6.03 -2.38 -0.01 1.55 16 Total: -1.00 -62.04 327.34 0.90 -61.14 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.21 Total: 29.85 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 3.45 Total: -34.52 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -2.52 Total: -83.61 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -1.85 Total: -18.39 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -62.04 0.90 -61.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846991153.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.713 kcal (2) G-P(sol) polarization free energy of solvation -62.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds