Wall clock time and date at job start Mon Mar 30 2020 06:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 H 1.09003 * 109.46799 * 306.04720 * 3 2 1 5 5 C 1.50697 * 109.46976 * 186.05337 * 3 2 1 6 6 H 1.08007 * 119.99601 * 243.86901 * 5 3 2 7 7 C 1.37874 * 120.00580 * 63.86812 * 5 3 2 8 8 N 1.31512 * 120.00001 * 197.60472 * 7 5 3 9 9 Si 1.86797 * 119.99619 * 17.61238 * 7 5 3 10 10 H 1.48501 * 109.47494 * 86.23963 * 9 7 5 11 11 H 1.48505 * 109.47081 * 206.23882 * 9 7 5 12 12 H 1.48499 * 109.47218 * 326.23224 * 9 7 5 13 13 N 1.46893 * 109.47447 * 66.04817 * 3 2 1 14 14 C 1.46901 * 111.00018 * 252.01746 * 13 3 2 15 15 C 1.53005 * 109.47222 * 184.83559 * 14 13 3 16 16 H 1.08999 * 109.47142 * 305.00279 * 15 14 13 17 17 O 1.42899 * 109.46876 * 65.00375 * 15 14 13 18 18 C 1.50702 * 109.47041 * 185.00005 * 15 14 13 19 19 C 1.38256 * 120.00203 * 265.00149 * 18 15 14 20 20 C 1.38217 * 119.99953 * 180.02562 * 19 18 15 21 21 C 1.38260 * 120.00048 * 359.97438 * 20 19 18 22 22 C 1.38208 * 119.99858 * 359.95317 * 21 20 19 23 23 C 1.38214 * 119.99888 * 84.73261 * 18 15 14 24 24 C 1.50703 * 119.99906 * 359.97438 * 23 18 15 25 25 H 1.09000 * 109.46778 * 295.47813 * 1 2 3 26 26 H 1.08998 * 109.47281 * 175.47623 * 1 2 3 27 27 H 1.09001 * 109.47212 * 55.46982 * 1 2 3 28 28 H 1.09002 * 109.47102 * 119.99704 * 2 1 3 29 29 H 1.08998 * 109.46795 * 239.99468 * 2 1 3 30 30 H 0.97000 * 119.99610 * 179.97438 * 8 7 5 31 31 H 1.00898 * 111.00139 * 15.97268 * 13 3 2 32 32 H 1.09000 * 109.47851 * 304.84011 * 14 13 3 33 33 H 1.09005 * 109.46960 * 64.84256 * 14 13 3 34 34 H 0.96705 * 113.99963 * 59.99799 * 17 15 14 35 35 H 1.07998 * 119.99940 * 359.97438 * 19 18 15 36 36 H 1.07998 * 119.99706 * 179.97438 * 20 19 18 37 37 H 1.07995 * 119.99836 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.00418 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.47047 * 90.00291 * 24 23 18 40 40 H 1.09000 * 109.47286 * 209.99991 * 24 23 18 41 41 H 1.08999 * 109.47406 * 330.00265 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5910 1.9866 -0.8309 5 6 3.5395 1.4451 -0.1498 6 1 4.1610 1.8282 0.6461 7 6 4.1181 0.9584 -1.3028 8 7 5.3929 0.6354 -1.3131 9 14 3.0912 0.7582 -2.8503 10 1 3.0725 2.0391 -3.6013 11 1 3.6812 -0.3061 -3.7016 12 1 1.7036 0.3820 -2.4784 13 7 1.6732 2.0916 1.2656 14 6 0.6049 3.0789 1.0607 15 6 0.3342 3.8174 2.3731 16 1 0.1129 3.0941 3.1580 17 8 1.4873 4.5784 2.7379 18 6 -0.8425 4.7420 2.1957 19 6 -0.6354 6.0706 1.8741 20 6 -1.7146 6.9188 1.7119 21 6 -3.0013 6.4385 1.8708 22 6 -3.2084 5.1100 2.1908 23 6 -2.1290 4.2606 2.3490 24 6 -2.3550 2.8109 2.6930 25 1 -0.3633 0.4421 0.9277 26 1 -0.3634 -1.0244 -0.0811 27 1 -0.3634 0.5825 -0.8466 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 5.7998 0.2926 -2.1242 31 1 1.4061 1.4083 1.9583 32 1 0.9125 3.7943 0.2980 33 1 -0.3028 2.5699 0.7363 34 1 1.7429 5.2433 2.0838 35 1 0.3697 6.4459 1.7504 36 1 -1.5527 7.9567 1.4612 37 1 -3.8445 7.1013 1.7445 38 1 -4.2135 4.7346 2.3144 39 1 -2.3772 2.6937 3.7765 40 1 -3.3051 2.4815 2.2724 41 1 -1.5461 2.2088 2.2790 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846991160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:17 Heat of formation + Delta-G solvation = -31.346221 kcal Electronic energy + Delta-G solvation = -20210.619244 eV Core-core repulsion = 17283.012342 eV Total energy + Delta-G solvation = -2927.606902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93899 -37.33755 -35.96035 -33.24352 -32.29855 -31.50358 -30.90165 -28.15281 -27.12066 -25.96150 -23.11442 -22.21358 -21.59515 -20.80833 -19.81617 -17.31775 -16.70522 -16.20332 -15.56191 -15.14804 -14.83245 -14.52616 -14.18878 -13.92927 -13.65894 -13.40762 -13.18788 -12.86407 -12.66909 -12.38205 -12.19516 -11.86691 -11.74254 -11.70641 -11.38745 -11.10822 -10.92098 -10.80043 -10.73639 -10.46062 -9.99415 -9.84489 -9.41692 -9.30478 -8.85961 -8.60567 -8.32932 -7.28373 -6.03750 -3.93553 1.26275 1.31535 3.28543 3.37359 3.39812 3.65414 4.45460 4.54406 4.66685 4.76184 4.83504 4.93995 5.16162 5.21249 5.27241 5.38283 5.44142 5.51676 5.53502 5.61355 5.67301 5.78320 5.83516 5.94007 5.97303 5.99878 6.14079 6.19653 6.41378 6.42816 6.46748 6.56068 6.62112 6.74437 6.86804 6.93040 7.18681 7.80213 7.89966 7.96446 8.35040 8.76154 9.17084 9.64050 11.09850 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025150 B = 0.005066 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.037620 B = 5525.444615 C = 5794.276811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.149 4.149 3 C 0.194 3.806 4 H 0.017 0.983 5 C -0.498 4.498 6 H 0.081 0.919 7 C 0.072 3.928 8 N -0.893 5.893 9 Si 0.856 3.144 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.257 1.257 13 N -0.662 5.662 14 C 0.034 3.966 15 C 0.151 3.849 16 H 0.103 0.897 17 O -0.541 6.541 18 C -0.109 4.109 19 C -0.107 4.107 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.078 4.078 24 C -0.123 4.123 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.262 0.738 31 H 0.326 0.674 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.371 0.629 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 7.867 5.954 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.188 4.188 3 C 0.086 3.914 4 H 0.035 0.965 5 C -0.537 4.537 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.683 3.317 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.182 1.182 13 N -0.292 5.292 14 C -0.096 4.096 15 C 0.091 3.909 16 H 0.121 0.879 17 O -0.346 6.346 18 C -0.110 4.110 19 C -0.125 4.125 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.078 4.078 24 C -0.180 4.180 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.219 0.781 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.093 7.869 6.322 19.850 hybrid contribution -1.327 -0.318 -1.762 2.228 sum -18.419 7.551 4.560 20.423 Atomic orbital electron populations 1.21933 0.98617 1.00262 1.00308 1.22579 0.92577 1.01498 1.02186 1.19560 0.96798 0.88303 0.86759 0.96505 1.21014 0.89240 1.40245 1.03165 0.90059 1.24896 0.94705 0.94772 0.98575 1.69994 1.12177 1.42966 1.27940 0.87349 0.81916 0.77904 0.84527 1.20697 1.21543 1.18157 1.60507 1.38490 1.18778 1.11378 1.22699 0.94032 0.96715 0.96158 1.20815 0.81980 0.90711 0.97426 0.87921 1.86623 1.46108 1.53312 1.48522 1.20609 0.95218 0.95363 0.99836 1.20931 0.99241 0.93126 0.99242 1.21089 0.92667 0.99640 1.00821 1.21097 0.96993 0.95621 1.00395 1.20997 0.98280 0.93703 1.00995 1.19719 0.92461 0.96213 0.99372 1.20923 1.02853 0.92221 1.01974 0.93808 0.93860 0.93727 0.92208 0.91924 0.92840 0.85706 0.91102 0.95303 0.78135 0.85836 0.86156 0.86320 0.86240 0.90937 0.91470 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.07 37.16 0.34 -2.26 16 2 C -0.15 -3.12 4.53 -26.73 -0.12 -3.24 16 3 C 0.19 4.47 1.73 -68.87 -0.12 4.35 16 4 H 0.02 0.41 6.23 -51.93 -0.32 0.08 16 5 C -0.50 -14.02 9.26 -34.44 -0.32 -14.33 16 6 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 7 C 0.07 2.07 5.29 -17.82 -0.09 1.97 16 8 N -0.89 -27.32 13.96 55.43 0.77 -26.55 16 9 Si 0.86 21.08 25.84 -169.99 -4.39 16.69 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.26 -5.92 5.60 56.52 0.32 -5.60 16 13 N -0.66 -13.16 6.00 -107.95 -0.65 -13.81 16 14 C 0.03 0.57 4.54 -3.82 -0.02 0.55 16 15 C 0.15 2.17 2.73 -27.88 -0.08 2.10 16 16 H 0.10 1.46 7.01 -51.93 -0.36 1.09 16 17 O -0.54 -8.55 12.94 -35.23 -0.46 -9.01 16 18 C -0.11 -1.42 5.07 -104.62 -0.53 -1.95 16 19 C -0.11 -1.29 9.30 -39.58 -0.37 -1.66 16 20 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 21 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 22 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 23 C -0.08 -0.92 5.88 -104.62 -0.62 -1.54 16 24 C -0.12 -1.26 9.22 36.01 0.33 -0.92 16 25 H 0.04 0.65 6.73 -51.93 -0.35 0.30 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 29 H 0.06 1.42 4.99 -51.93 -0.26 1.16 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.33 6.02 7.75 -39.29 -0.30 5.72 16 32 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 33 H 0.03 0.46 5.65 -51.93 -0.29 0.16 16 34 H 0.37 4.90 7.32 45.56 0.33 5.24 16 35 H 0.12 1.31 6.41 -52.49 -0.34 0.98 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.07 0.80 5.47 -51.93 -0.28 0.51 16 LS Contribution 321.64 15.07 4.85 4.85 Total: -1.00 -31.55 321.64 -8.26 -39.81 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.61 Total: 10.03 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -2.77 Total: -22.01 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.13 Total: -40.35 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.46 Total: -9.01 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.39 Total: 16.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.55 -8.26 -39.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846991160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.462 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds