Wall clock time and date at job start Mon Mar 30 2020 06:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 H 1.09003 * 109.46799 * 306.04720 * 3 2 1 5 5 C 1.50697 * 109.46976 * 186.05337 * 3 2 1 6 6 H 1.08007 * 119.99601 * 243.86901 * 5 3 2 7 7 C 1.37874 * 120.00580 * 63.86812 * 5 3 2 8 8 N 1.31512 * 120.00001 * 197.60472 * 7 5 3 9 9 Si 1.86797 * 119.99619 * 17.61238 * 7 5 3 10 10 H 1.48501 * 109.47494 * 86.23963 * 9 7 5 11 11 H 1.48505 * 109.47081 * 206.23882 * 9 7 5 12 12 H 1.48499 * 109.47218 * 326.23224 * 9 7 5 13 13 N 1.46893 * 109.47447 * 66.04817 * 3 2 1 14 14 C 1.46901 * 111.00018 * 252.01746 * 13 3 2 15 15 C 1.53005 * 109.47222 * 184.83559 * 14 13 3 16 16 H 1.08999 * 109.47142 * 305.00279 * 15 14 13 17 17 O 1.42899 * 109.46876 * 65.00375 * 15 14 13 18 18 C 1.50702 * 109.47041 * 185.00005 * 15 14 13 19 19 C 1.38256 * 120.00203 * 265.00149 * 18 15 14 20 20 C 1.38217 * 119.99953 * 180.02562 * 19 18 15 21 21 C 1.38260 * 120.00048 * 359.97438 * 20 19 18 22 22 C 1.38208 * 119.99858 * 359.95317 * 21 20 19 23 23 C 1.38214 * 119.99888 * 84.73261 * 18 15 14 24 24 C 1.50703 * 119.99906 * 359.97438 * 23 18 15 25 25 H 1.09000 * 109.46778 * 295.47813 * 1 2 3 26 26 H 1.08998 * 109.47281 * 175.47623 * 1 2 3 27 27 H 1.09001 * 109.47212 * 55.46982 * 1 2 3 28 28 H 1.09002 * 109.47102 * 119.99704 * 2 1 3 29 29 H 1.08998 * 109.46795 * 239.99468 * 2 1 3 30 30 H 0.97000 * 119.99610 * 179.97438 * 8 7 5 31 31 H 1.00898 * 111.00139 * 15.97268 * 13 3 2 32 32 H 1.09000 * 109.47851 * 304.84011 * 14 13 3 33 33 H 1.09005 * 109.46960 * 64.84256 * 14 13 3 34 34 H 0.96705 * 113.99963 * 59.99799 * 17 15 14 35 35 H 1.07998 * 119.99940 * 359.97438 * 19 18 15 36 36 H 1.07998 * 119.99706 * 179.97438 * 20 19 18 37 37 H 1.07995 * 119.99836 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.00418 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.47047 * 90.00291 * 24 23 18 40 40 H 1.09000 * 109.47286 * 209.99991 * 24 23 18 41 41 H 1.08999 * 109.47406 * 330.00265 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5910 1.9866 -0.8309 5 6 3.5395 1.4451 -0.1498 6 1 4.1610 1.8282 0.6461 7 6 4.1181 0.9584 -1.3028 8 7 5.3929 0.6354 -1.3131 9 14 3.0912 0.7582 -2.8503 10 1 3.0725 2.0391 -3.6013 11 1 3.6812 -0.3061 -3.7016 12 1 1.7036 0.3820 -2.4784 13 7 1.6732 2.0916 1.2656 14 6 0.6049 3.0789 1.0607 15 6 0.3342 3.8174 2.3731 16 1 0.1129 3.0941 3.1580 17 8 1.4873 4.5784 2.7379 18 6 -0.8425 4.7420 2.1957 19 6 -0.6354 6.0706 1.8741 20 6 -1.7146 6.9188 1.7119 21 6 -3.0013 6.4385 1.8708 22 6 -3.2084 5.1100 2.1908 23 6 -2.1290 4.2606 2.3490 24 6 -2.3550 2.8109 2.6930 25 1 -0.3633 0.4421 0.9277 26 1 -0.3634 -1.0244 -0.0811 27 1 -0.3634 0.5825 -0.8466 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 5.7998 0.2926 -2.1242 31 1 1.4061 1.4083 1.9583 32 1 0.9125 3.7943 0.2980 33 1 -0.3028 2.5699 0.7363 34 1 1.7429 5.2433 2.0838 35 1 0.3697 6.4459 1.7504 36 1 -1.5527 7.9567 1.4612 37 1 -3.8445 7.1013 1.7445 38 1 -4.2135 4.7346 2.3144 39 1 -2.3772 2.6937 3.7765 40 1 -3.3051 2.4815 2.2724 41 1 -1.5461 2.2088 2.2790 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846991160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:17 Heat of formation + Delta-G solvation = -53.934789 kcal Electronic energy + Delta-G solvation = -20211.598758 eV Core-core repulsion = 17283.012342 eV Total energy + Delta-G solvation = -2928.586416 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87166 -38.69736 -37.37169 -34.53105 -33.96201 -32.87031 -31.95994 -29.73247 -28.10297 -27.31288 -24.59963 -23.60839 -22.53135 -21.98795 -21.38931 -18.87794 -18.24777 -17.30207 -16.83278 -16.58835 -15.96474 -15.88671 -15.66626 -15.06904 -14.81492 -14.62006 -14.51529 -14.27653 -13.95198 -13.52766 -13.40797 -13.15212 -13.05266 -12.85004 -12.66911 -12.60847 -12.40998 -12.31238 -11.94687 -11.81386 -11.68145 -11.43218 -11.32060 -10.88945 -10.49887 -9.70454 -9.46867 -8.89285 -8.26164 -6.20716 0.41107 0.48972 1.32858 1.36419 1.44796 2.36544 2.80217 3.05692 3.35235 3.60187 3.92301 3.98028 4.05599 4.13752 4.19205 4.29656 4.30956 4.36890 4.46354 4.49666 4.58736 4.69251 4.79335 4.81629 4.83469 4.96518 4.99325 5.08374 5.15004 5.17128 5.23076 5.32607 5.51249 5.58961 5.62214 5.72045 5.76656 6.08006 6.12802 6.68552 6.78917 6.85167 6.89435 7.41472 8.91651 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025150 B = 0.005066 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.037620 B = 5525.444615 C = 5794.276811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.147 4.147 3 C 0.201 3.799 4 H 0.015 0.985 5 C -0.506 4.506 6 H 0.029 0.971 7 C 0.015 3.985 8 N -0.945 5.945 9 Si 0.924 3.076 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.228 1.228 13 N -0.677 5.677 14 C 0.042 3.958 15 C 0.160 3.840 16 H 0.104 0.896 17 O -0.561 6.561 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.132 4.132 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.088 4.088 24 C -0.123 4.123 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.334 0.666 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.379 0.621 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.459 8.139 5.546 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.187 4.187 3 C 0.092 3.908 4 H 0.033 0.967 5 C -0.545 4.545 6 H 0.047 0.953 7 C -0.182 4.182 8 N -0.585 5.585 9 Si 0.748 3.252 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.150 1.150 13 N -0.308 5.308 14 C -0.088 4.088 15 C 0.101 3.899 16 H 0.122 0.878 17 O -0.368 6.368 18 C -0.130 4.130 19 C -0.141 4.141 20 C -0.150 4.150 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.088 4.088 24 C -0.179 4.179 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.152 0.848 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.228 0.772 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.839 8.152 5.932 23.150 hybrid contribution -0.132 -0.315 -1.518 1.556 sum -20.971 7.837 4.414 22.819 Atomic orbital electron populations 1.21836 0.94871 1.02054 1.01456 1.22422 0.95865 0.99191 1.01195 1.19322 0.93287 0.90119 0.88079 0.96679 1.21315 0.91982 1.39378 1.01796 0.95266 1.25738 0.95859 0.94535 1.02065 1.70147 1.14517 1.44891 1.28963 0.86237 0.81544 0.77794 0.79577 1.20489 1.21459 1.15050 1.60289 1.40826 1.19336 1.10300 1.22670 0.93294 0.95631 0.97191 1.20687 0.82285 0.90836 0.96107 0.87798 1.86581 1.47047 1.53808 1.49316 1.20491 0.95047 0.95514 1.01955 1.21131 1.00115 0.93249 0.99622 1.21385 0.92623 1.00506 1.00461 1.21487 0.97600 0.95985 0.98981 1.21328 0.99036 0.93825 1.00369 1.19974 0.92278 0.97302 0.99229 1.20953 1.03293 0.91087 1.02609 0.91898 0.91603 0.93543 0.92681 0.93618 0.92787 0.84775 0.92576 0.93693 0.77210 0.85536 0.84202 0.83702 0.83930 0.90110 0.89820 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.07 71.98 0.65 -3.73 16 2 C -0.15 -5.95 4.53 30.59 0.14 -5.81 16 3 C 0.20 9.19 1.73 44.17 0.08 9.27 16 4 H 0.02 0.71 6.23 -2.39 -0.01 0.69 16 5 C -0.51 -29.45 9.26 25.60 0.24 -29.21 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.94 -59.98 13.96 21.45 0.30 -59.68 16 9 Si 0.92 43.74 25.84 68.60 1.77 45.52 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 12 H -0.23 -9.62 5.60 99.48 0.56 -9.06 16 13 N -0.68 -26.86 6.00 -495.45 -2.97 -29.83 16 14 C 0.04 1.35 4.54 86.30 0.39 1.74 16 15 C 0.16 4.54 2.73 29.85 0.08 4.62 16 16 H 0.10 2.86 7.01 -2.39 -0.02 2.85 16 17 O -0.56 -17.93 12.94 -148.98 -1.93 -19.86 16 18 C -0.13 -3.20 5.07 -19.87 -0.10 -3.30 16 19 C -0.12 -2.83 9.30 22.27 0.21 -2.62 16 20 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 21 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 22 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 23 C -0.09 -1.88 5.88 -19.86 -0.12 -2.00 16 24 C -0.12 -2.18 9.22 71.24 0.66 -1.52 16 25 H 0.06 1.66 6.73 -2.39 -0.02 1.64 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 2.24 8.04 -2.39 -0.02 2.22 16 29 H 0.05 1.98 4.99 -2.39 -0.01 1.97 16 30 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 31 H 0.33 12.17 7.75 -89.70 -0.70 11.48 16 32 H 0.06 1.96 8.02 -2.39 -0.02 1.94 16 33 H 0.05 1.32 5.65 -2.38 -0.01 1.30 16 34 H 0.38 10.30 7.32 -74.05 -0.54 9.75 16 35 H 0.13 2.66 6.41 -2.91 -0.02 2.64 16 36 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 41 H 0.06 1.22 5.47 -2.39 -0.01 1.21 16 Total: -1.00 -70.27 321.64 0.16 -70.12 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -0.35 Total: 31.27 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 3.34 Total: -37.53 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -2.67 Total: -89.51 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -1.93 Total: -19.86 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.77 Total: 45.52 kcal Total: -70.27 0.16 -70.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846991160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.182 kcal (2) G-P(sol) polarization free energy of solvation -70.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds