Wall clock time and date at job start Mon Mar 30 2020 06:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17389 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09006 * 109.49539 * 185.54731 * 3 2 1 5 5 C 1.53040 * 109.52805 * 65.47084 * 3 2 1 6 6 C 1.53031 * 109.54182 * 178.66235 * 5 3 2 7 7 C 1.52766 * 109.38357 * 61.23776 * 6 5 3 8 8 N 1.46921 * 109.00871 * 305.59168 * 7 6 5 9 9 C 1.34777 * 120.62738 * 233.58120 * 8 7 6 10 10 O 1.21288 * 119.99593 * 179.71944 * 9 8 7 11 11 C 1.50697 * 120.00369 * 359.71786 * 9 8 7 12 12 C 1.53001 * 109.47291 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46886 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 C 1.46926 * 118.74177 * 53.30445 * 8 7 6 24 24 H 4.18782 * 15.03137 * 0.02562 * 4 2 1 25 25 H 1.08998 * 109.45799 * 298.68636 * 5 3 2 26 26 H 1.09007 * 109.45623 * 58.65691 * 5 3 2 27 27 H 1.09000 * 109.50029 * 181.31896 * 6 5 3 28 28 H 1.09001 * 109.49836 * 301.38332 * 6 5 3 29 29 H 1.09000 * 109.51070 * 185.70415 * 7 6 5 30 30 H 1.09002 * 109.42624 * 65.42463 * 7 6 5 31 31 H 1.09001 * 109.46613 * 59.99889 * 11 9 8 32 32 H 1.09002 * 109.47120 * 300.00240 * 11 9 8 33 33 H 1.09001 * 109.46652 * 60.00253 * 12 11 9 34 34 H 1.08992 * 109.47514 * 300.00342 * 12 11 9 35 35 H 1.09002 * 109.47398 * 300.00496 * 13 12 11 36 36 H 1.09001 * 109.47194 * 60.00677 * 13 12 11 37 37 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 38 38 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 39 39 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.58410 * 66.43252 * 23 8 7 41 41 H 1.09000 * 109.58810 * 186.71678 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0092 1.0236 0.0993 5 6 3.1577 -0.5979 -1.3122 6 6 4.6877 -0.5668 -1.3266 7 6 5.2228 -1.4086 -0.1696 8 7 4.6211 -0.9357 1.0846 9 6 5.3970 -0.5909 2.1313 10 8 4.8883 -0.1972 3.1595 11 6 6.8966 -0.6947 2.0241 12 6 7.5343 -0.2458 3.3404 13 6 9.0567 -0.3517 3.2317 14 6 9.6944 0.0966 4.5482 15 6 11.1940 -0.0072 4.4411 16 1 11.6470 -0.3574 3.5253 17 6 11.9878 0.3460 5.5116 18 7 11.4362 0.7730 6.6266 19 14 13.8466 0.2167 5.3790 20 1 14.2127 -0.2871 4.0309 21 1 14.4521 1.5565 5.5876 22 1 14.3525 -0.7215 6.4128 23 6 3.1577 -0.8399 1.1740 24 1 -1.0501 -0.0012 0.0004 25 1 2.8146 -1.6288 -1.3992 26 1 2.7750 -0.0157 -2.1505 27 1 5.0509 -0.9717 -2.2712 28 1 5.0317 0.4615 -1.2153 29 1 6.3067 -1.3066 -0.1161 30 1 4.9595 -2.4541 -0.3298 31 1 7.2480 -0.0556 1.2140 32 1 7.1755 -1.7282 1.8186 33 1 7.1829 -0.8845 4.1507 34 1 7.2553 0.7877 3.5454 35 1 9.3354 -1.3854 3.0269 36 1 9.4085 0.2868 2.4214 37 1 9.4158 1.1302 4.7535 38 1 9.3427 -0.5421 5.3584 39 1 11.9947 1.0219 7.3797 40 1 2.7226 -1.8382 1.1257 41 1 2.8793 -0.3652 2.1148 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848276628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:37 Heat of formation + Delta-G solvation = -14.819482 kcal Electronic energy + Delta-G solvation = -19082.337333 eV Core-core repulsion = 16155.447084 eV Total energy + Delta-G solvation = -2926.890249 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37574 -37.92392 -34.91606 -34.50966 -32.61551 -32.47428 -30.87664 -29.53142 -26.29993 -25.11313 -23.99683 -22.32976 -21.26972 -19.99467 -19.00913 -18.33227 -17.00305 -16.19374 -15.94695 -15.82481 -15.07336 -14.79845 -14.60439 -14.41279 -14.11348 -13.60299 -13.20711 -13.02849 -12.58034 -12.19570 -12.03758 -11.78795 -11.56409 -11.48002 -11.42187 -11.21256 -10.98431 -10.60253 -10.52110 -10.46902 -10.38643 -10.35489 -9.75116 -9.59347 -9.20398 -8.95355 -8.81508 -8.29296 -5.93881 -3.96276 2.40782 2.52501 2.71047 2.89705 3.34067 3.41192 3.45085 3.97078 4.37542 4.49370 4.50202 4.54503 4.69041 4.80778 4.92518 5.11437 5.17732 5.31160 5.35779 5.41197 5.41989 5.46887 5.56948 5.59836 5.67809 5.71873 5.88515 5.90612 6.15682 6.27562 6.35894 6.57282 6.86149 7.03610 7.21213 7.28581 7.31366 7.76201 7.92130 8.07862 8.20942 8.49586 9.11767 9.67333 11.17512 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.046733 B = 0.002877 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.000948 B = 9730.681313 C =10161.126301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.006 3.994 4 H 0.096 0.904 5 C -0.110 4.110 6 C -0.137 4.137 7 C 0.104 3.896 8 N -0.621 5.621 9 C 0.515 3.485 10 O -0.534 6.534 11 C -0.137 4.137 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.054 3.946 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.121 3.879 24 H 0.218 0.782 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.068 0.932 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.652 -4.459 -18.766 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.180 4.180 3 C -0.013 4.013 4 H 0.114 0.886 5 C -0.147 4.147 6 C -0.175 4.175 7 C -0.019 4.019 8 N -0.356 5.356 9 C 0.305 3.695 10 O -0.409 6.409 11 C -0.177 4.177 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.018 4.018 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.147 4.147 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.002 4.002 24 H 0.235 0.765 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.847 -4.195 -18.012 26.406 hybrid contribution 0.741 -0.028 -0.112 0.750 sum -18.107 -4.222 -18.124 25.965 Atomic orbital electron populations 1.24910 0.95881 1.00851 1.00286 1.22797 0.93946 1.00507 1.00734 1.18664 0.84689 1.01434 0.96524 0.88602 1.21535 0.95518 1.01617 0.96042 1.21881 0.95345 1.01540 0.98727 1.21711 0.99160 0.97983 0.83033 1.48185 1.06095 1.67095 1.14215 1.21150 0.90146 0.75815 0.82378 1.90702 1.75624 1.45467 1.29116 1.21823 0.89971 1.03626 1.02252 1.21469 0.96557 1.01938 0.94236 1.21644 0.91875 1.00147 1.01059 1.19103 0.94792 0.96639 0.91272 1.21320 0.91923 1.43453 0.99016 0.92707 1.25052 0.98646 0.95467 0.95490 1.69991 1.35062 1.44897 1.03530 0.86555 0.85930 0.77630 0.77987 1.19785 1.21068 1.21062 1.21462 0.80082 0.99834 0.98815 0.76530 0.91249 0.91178 0.90001 0.90978 0.88849 0.91209 0.89106 0.89104 0.91799 0.91808 0.93482 0.93492 0.96590 0.96580 0.93112 0.91339 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 19.25 29.55 0.57 -1.08 16 2 C -0.18 -1.68 12.56 -37.12 -0.47 -2.15 16 3 C 0.01 0.05 2.71 -93.29 -0.25 -0.20 16 4 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.11 -0.74 5.12 -26.69 -0.14 -0.87 16 6 C -0.14 -0.83 6.06 -26.83 -0.16 -1.00 16 7 C 0.10 0.77 6.31 -3.93 -0.02 0.74 16 8 N -0.62 -6.75 2.98 -173.03 -0.52 -7.27 16 9 C 0.52 7.43 7.70 -10.99 -0.08 7.34 16 10 O -0.53 -9.95 15.39 5.55 0.09 -9.86 16 11 C -0.14 -1.84 4.05 -27.88 -0.11 -1.95 16 12 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 13 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 14 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 15 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.68 13.29 55.43 0.74 -26.95 16 19 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 23 C 0.12 1.26 5.68 -3.71 -0.02 1.24 16 24 H 0.22 1.02 7.80 -54.09 -0.42 0.60 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.63 5.93 -51.93 -0.31 0.32 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 1.04 7.68 -51.93 -0.40 0.64 16 32 H 0.09 1.05 7.95 -51.93 -0.41 0.64 16 33 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 1.22 7.00 -51.93 -0.36 0.86 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -34.16 339.35 -8.04 -42.20 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -6.94 Total: -4.41 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.50 Total: -15.78 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.22 Total: -34.22 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.16 -8.04 -42.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848276628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.384 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds