Wall clock time and date at job start Mon Mar 30 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32990 * 119.99823 * 2 1 4 4 C 1.47107 * 119.99603 * 172.34242 * 3 2 1 5 5 O 1.21609 * 120.00139 * 354.00182 * 4 3 2 6 6 N 1.34774 * 119.99703 * 174.00067 * 4 3 2 7 7 C 1.46502 * 119.99962 * 179.97438 * 6 4 3 8 8 H 1.08997 * 110.01664 * 325.70168 * 7 6 4 9 9 C 1.53876 * 110.03164 * 87.09156 * 7 6 4 10 10 C 1.54268 * 106.59948 * 119.28750 * 9 7 6 11 11 C 1.54891 * 104.19375 * 23.60884 * 10 9 7 12 12 H 1.08998 * 110.75742 * 80.56056 * 11 10 9 13 13 C 1.50700 * 110.75444 * 203.74453 * 11 10 9 14 14 H 1.08002 * 120.00271 * 118.54772 * 13 11 10 15 15 C 1.37879 * 119.99995 * 298.54649 * 13 11 10 16 16 N 1.31515 * 119.99823 * 179.97438 * 15 13 11 17 17 Si 1.86796 * 120.00126 * 0.02562 * 15 13 11 18 18 H 1.48495 * 109.47252 * 89.99803 * 17 15 13 19 19 H 1.48498 * 109.47258 * 209.99918 * 17 15 13 20 20 H 1.48503 * 109.46825 * 329.99968 * 17 15 13 21 21 C 1.54266 * 110.03446 * 204.31161 * 7 6 4 22 22 C 1.50698 * 119.99505 * 179.97438 * 2 1 3 23 23 C 1.52998 * 117.49817 * 288.02456 * 22 2 1 24 24 C 1.52999 * 117.50472 * 356.65132 * 22 2 1 25 25 H 1.09000 * 109.47093 * 270.00115 * 1 2 3 26 26 H 1.08996 * 109.47290 * 30.00138 * 1 2 3 27 27 H 1.08999 * 109.47461 * 150.00298 * 1 2 3 28 28 H 1.08002 * 120.00532 * 352.33492 * 3 2 1 29 29 H 0.97006 * 120.00413 * 359.97438 * 6 4 3 30 30 H 1.09003 * 110.03422 * 238.56847 * 9 7 6 31 31 H 1.09001 * 110.03095 * 0.02562 * 9 7 6 32 32 H 1.09000 * 110.48655 * 142.29084 * 10 9 7 33 33 H 1.09000 * 110.48657 * 264.93346 * 10 9 7 34 34 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 35 35 H 1.09004 * 110.48340 * 335.78033 * 21 7 6 36 36 H 1.08990 * 110.48711 * 98.42532 * 21 7 6 37 37 H 1.09002 * 115.56005 * 142.34122 * 22 2 1 38 38 H 1.08997 * 117.50219 * 0.02562 * 23 22 2 39 39 H 1.09008 * 117.49823 * 214.97973 * 23 22 2 40 40 H 1.08994 * 117.49860 * 145.01802 * 24 22 2 41 41 H 1.09003 * 117.51686 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6331 1.1574 0.1698 5 8 4.2204 0.1220 0.4188 6 7 4.3210 2.3100 0.0493 7 6 5.7762 2.3158 0.2189 8 1 6.0671 1.5822 0.9707 9 6 6.4642 1.9991 -1.1205 10 6 7.3360 3.2233 -1.4685 11 6 7.6031 3.9004 -0.1013 12 1 8.4083 3.3932 0.4302 13 6 7.9231 5.3618 -0.2825 14 1 7.2859 6.1131 0.1602 15 6 9.0293 5.7398 -1.0135 16 7 9.3083 7.0152 -1.1721 17 14 10.1310 4.4405 -1.7798 18 1 9.6450 4.1228 -3.1465 19 1 11.5225 4.9537 -1.8561 20 1 10.1015 3.2121 -0.9459 21 6 6.2537 3.7211 0.6394 22 6 2.2604 -1.3051 0.0006 23 6 2.2499 -2.1263 1.2915 24 6 1.4403 -2.5943 0.0804 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6392 2.0829 -0.1247 29 1 3.8527 3.1359 -0.1497 30 1 7.0898 1.1122 -1.0185 31 1 5.7155 1.8415 -1.8968 32 1 8.2729 2.9066 -1.9269 33 1 6.7961 3.9003 -2.1305 34 1 10.0867 7.2812 -1.6860 35 1 5.5389 4.4788 0.3182 36 1 6.4008 3.7671 1.7183 37 1 3.1697 -1.3235 -0.6002 38 1 1.6977 -1.7228 2.1402 39 1 3.1523 -2.6851 1.5399 40 1 1.8101 -3.4607 -0.4678 41 1 0.3558 -2.4988 0.1330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772669565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:35 Heat of formation + Delta-G solvation = -7.652411 kcal Electronic energy + Delta-G solvation = -19678.594594 eV Core-core repulsion = 16752.015133 eV Total energy + Delta-G solvation = -2926.579462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.87521 -38.14199 -36.95184 -33.65860 -33.47735 -32.05041 -28.82945 -28.30898 -27.21643 -23.93520 -23.17866 -22.43059 -21.06298 -19.81259 -19.35162 -18.42037 -17.00421 -16.86401 -15.96843 -15.19329 -15.13996 -14.82633 -14.07540 -14.01512 -13.69609 -13.31650 -13.03834 -12.77823 -12.55099 -12.46250 -12.35767 -11.74283 -11.57597 -11.34686 -11.13953 -10.95280 -10.83684 -10.49732 -10.41827 -10.09611 -9.94036 -9.76268 -9.45216 -9.34320 -9.03877 -9.01607 -8.58413 -8.51662 -6.07483 -4.06502 1.29251 3.30142 3.39468 3.41169 3.41967 3.53596 3.87578 4.42269 4.42900 4.67980 4.88790 4.96520 4.99607 5.20615 5.22549 5.28867 5.34108 5.45511 5.47597 5.48722 5.61457 5.63888 5.77144 6.00939 6.12565 6.13628 6.19096 6.24146 6.32556 6.44820 6.46052 6.51485 6.59986 6.72485 6.85733 7.05320 7.11620 7.52723 7.76286 7.85575 8.50605 8.53385 8.95670 9.55775 11.05764 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.043497 B = 0.003787 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.574947 B = 7391.593262 C = 7693.484841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.012 4.012 3 C -0.221 4.221 4 C 0.539 3.461 5 O -0.542 6.542 6 N -0.716 5.716 7 C 0.138 3.862 8 H 0.082 0.918 9 C -0.130 4.130 10 C -0.130 4.130 11 C 0.015 3.985 12 H 0.034 0.966 13 C -0.510 4.510 14 H 0.073 0.927 15 C 0.070 3.930 16 N -0.903 5.903 17 Si 0.883 3.117 18 H -0.278 1.278 19 H -0.296 1.296 20 H -0.265 1.265 21 C -0.110 4.110 22 C -0.109 4.109 23 C -0.152 4.152 24 C -0.193 4.193 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.398 0.602 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.199 -14.743 1.774 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.014 4.014 3 C -0.242 4.242 4 C 0.328 3.672 5 O -0.422 6.422 6 N -0.366 5.366 7 C 0.034 3.966 8 H 0.100 0.900 9 C -0.168 4.168 10 C -0.168 4.168 11 C -0.005 4.005 12 H 0.052 0.948 13 C -0.548 4.548 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.541 5.541 17 Si 0.712 3.288 18 H -0.205 1.205 19 H -0.223 1.223 20 H -0.190 1.190 21 C -0.148 4.148 22 C -0.127 4.127 23 C -0.189 4.189 24 C -0.230 4.230 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.144 0.856 29 H 0.233 0.767 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.146 0.854 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.634 -15.333 1.878 22.701 hybrid contribution 0.480 -0.028 -0.687 0.838 sum -16.154 -15.362 1.191 22.324 Atomic orbital electron populations 1.21007 0.91253 1.03320 1.02762 1.21763 0.95085 0.93403 0.91187 1.22469 0.93897 0.98521 1.09305 1.18539 0.87593 0.83784 0.77235 1.90740 1.71139 1.31509 1.48791 1.46231 1.08574 1.10142 1.71669 1.21800 0.77967 0.99369 0.97438 0.89956 1.22548 0.98846 0.98952 0.96500 1.22821 0.97764 0.95485 1.00767 1.20072 0.92471 0.96811 0.91099 0.94761 1.20980 1.10821 0.89935 1.33062 0.90845 1.24992 0.97202 0.95027 0.95870 1.69902 1.27890 1.15164 1.41157 0.86893 0.79506 0.82297 0.80117 1.20468 1.22290 1.18953 1.22581 0.99354 0.93055 0.99811 1.21293 1.00343 0.88138 1.02905 1.22767 1.01994 1.02662 0.91519 1.23161 0.98416 0.98366 1.03077 0.90456 0.90989 0.90862 0.85578 0.76719 0.92367 0.92519 0.93615 0.91496 0.92697 0.91399 0.92263 0.85433 0.89244 0.88628 0.88819 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 9.45 36.01 0.34 -0.57 16 2 C -0.01 -0.13 5.80 -101.17 -0.59 -0.72 16 3 C -0.22 -2.53 9.63 -37.80 -0.36 -2.90 16 4 C 0.54 8.01 7.67 -12.66 -0.10 7.91 16 5 O -0.54 -9.54 13.11 5.27 0.07 -9.47 16 6 N -0.72 -10.46 4.98 -53.90 -0.27 -10.72 16 7 C 0.14 2.38 3.23 -66.81 -0.22 2.17 16 8 H 0.08 1.49 7.59 -51.93 -0.39 1.10 16 9 C -0.13 -2.36 6.59 -25.61 -0.17 -2.53 16 10 C -0.13 -2.77 5.08 -25.07 -0.13 -2.90 16 11 C 0.01 0.34 2.30 -89.74 -0.21 0.13 16 12 H 0.03 0.81 7.37 -51.93 -0.38 0.43 16 13 C -0.51 -14.01 9.12 -34.44 -0.31 -14.32 16 14 H 0.07 2.17 8.03 -52.49 -0.42 1.75 16 15 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 16 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 17 Si 0.88 21.86 24.46 -169.99 -4.16 17.70 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.26 -6.31 6.48 56.52 0.37 -5.94 16 21 C -0.11 -2.08 5.95 -25.03 -0.15 -2.23 16 22 C -0.11 -1.27 4.12 -91.77 -0.38 -1.64 16 23 C -0.15 -1.62 10.22 -26.73 -0.27 -1.89 16 24 C -0.19 -1.74 9.77 -26.73 -0.26 -2.00 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.44 8.06 -51.93 -0.42 0.02 16 27 H 0.07 0.46 6.45 -51.93 -0.34 0.13 16 28 H 0.13 1.12 8.04 -52.49 -0.42 0.70 16 29 H 0.40 4.94 8.33 -40.82 -0.34 4.60 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.98 7.92 -51.93 -0.41 0.57 16 32 H 0.05 1.00 4.90 -51.93 -0.25 0.74 16 33 H 0.07 1.45 8.04 -51.93 -0.42 1.04 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.07 1.26 7.63 -51.93 -0.40 0.86 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.13 1.80 6.62 -51.93 -0.34 1.46 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.70 6.36 -51.93 -0.33 0.37 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -31.17 324.09 -8.17 -39.34 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.57 Total: 4.51 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -2.90 Total: -19.58 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.50 Total: -37.40 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.16 Total: 17.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.17 -8.17 -39.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772669565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.688 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds